genome.fa.s10.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  158  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52602452--52602764	47	6.7	48	79	10	258	29	20	28	22	1.98
52613301--52613371	30	2.4	30	95	0	124	19	36	25	18	1.94
52614715--52614767	26	2.0	26	100	0	106	39	18	7	33	1.79
52616193--52616308	54	2.1	55	79	7	130	23	19	31	25	1.98
52617692--52617766	38	2.0	38	84	5	98	64	8	26	1	1.30
52625804--52625851	22	2.1	22	85	11	62	45	2	22	29	1.64
52626765--52626796	4	8.0	4	100	0	64	75	0	0	25	0.81
52627587--52627646	30	2.0	30	96	0	111	33	21	20	25	1.97
52634070--52634247	27	6.6	27	83	3	205	26	15	28	29	1.96
52634071--52634226	82	1.9	81	88	3	233	26	15	28	29	1.96
52634067--52634247	82	2.2	81	83	2	229	27	15	27	29	1.96
52649241--52649465	40	5.6	39	83	7	249	24	22	28	24	1.99
52649241--52649465	80	2.8	80	82	7	287	24	22	28	24	1.99
52653127--52653157	15	2.1	15	100	0	62	29	12	25	32	1.93
52661088--52661266	59	3.0	59	88	3	279	20	16	32	30	1.95
52662921--52663059	75	1.9	75	92	3	235	25	18	30	25	1.98
52665249--52665434	41	4.6	41	89	3	261	24	24	26	24	2.00
52665251--52665404	81	1.9	82	90	4	249	24	24	25	25	2.00
52673211--52673396	41	4.6	41	89	3	261	24	24	26	24	2.00
52673213--52673366	81	1.9	82	90	4	249	24	24	25	25	2.00
52678321--52678444	46	2.6	48	91	3	189	29	17	28	25	1.98
52678318--52678479	46	3.4	46	80	10	157	29	19	27	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52678415--52678544	49	2.7	49	76	0	125	30	21	26	22	1.99
52679033--52679123	45	2.0	45	100	0	182	42	10	8	37	1.71
52679092--52679124	13	2.6	13	90	4	50	48	12	0	39	1.40
52681593--52681627	11	3.1	11	91	4	52	82	5	0	11	0.82
52691698--52691766	27	2.6	27	90	0	102	26	14	28	30	1.95
52694969--52694993	13	1.9	13	100	0	50	76	0	16	8	1.02
52696280--52696457	27	6.6	27	81	3	187	26	14	28	30	1.95
52696281--52696436	82	1.9	81	86	3	224	26	14	28	30	1.95
52696277--52696457	82	2.2	81	82	2	220	27	14	27	30	1.95
52704263--52704413	27	5.6	27	81	4	169	27	15	28	29	1.96
52704264--52704413	82	1.8	81	88	4	230	26	15	28	29	1.96
52704263--52704413	55	2.8	53	81	4	167	27	15	28	29	1.96
52706943--52707021	39	2.0	39	100	0	158	27	20	15	36	1.92
52710311--52710422	47	2.4	47	98	1	215	26	28	25	19	1.99
52710358--52710560	91	2.2	91	81	4	237	26	20	27	25	1.99
52710435--52710557	44	2.7	46	85	9	164	26	18	26	28	1.98
52717828--52718177	47	7.4	46	72	15	198	25	20	30	23	1.98
52717828--52718177	94	3.7	94	77	6	327	25	20	30	23	1.98
52717961--52718087	44	2.8	47	80	9	147	25	19	28	25	1.99
52721820--52721914	42	2.2	42	83	1	127	33	23	17	25	1.96
52721839--52721958	42	2.8	44	80	8	131	35	25	17	21	1.95
52728463--52728561	42	2.3	42	79	5	110	31	23	20	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52728496--52728605	44	2.6	43	80	9	127	33	24	19	22	1.97
52728678--52728703	11	2.4	11	100	0	52	23	19	23	34	1.96
52734789--52734819	6	5.2	6	96	0	53	67	3	16	12	1.35
52735218--52735261	19	2.3	19	96	0	79	31	15	15	36	1.90
52743555--52743636	32	2.6	32	88	0	110	30	25	19	24	1.98
52744519--52744618	44	2.3	44	92	0	182	27	19	23	31	1.98
52748886--52748985	44	2.3	44	91	0	173	26	19	23	32	1.97
52758733--52758763	15	2.1	15	93	0	53	64	6	0	29	1.18
52760334--52760699	46	8.0	46	90	1	511	21	23	14	40	1.90
52762079--52762299	40	5.6	40	81	3	250	25	26	23	24	2.00
52770175--52770394	40	5.6	40	80	4	241	25	26	23	25	2.00
52785426--52785459	18	1.9	17	88	5	50	73	0	2	23	0.97
52786824--52787030	38	5.6	37	76	12	169	24	27	23	24	2.00
52786848--52787030	37	5.0	36	77	14	151	24	28	23	23	2.00
52786832--52787030	110	1.8	110	89	5	312	25	27	23	24	2.00
52794359--52794541	40	4.6	40	83	4	228	24	25	24	25	2.00
52802387--52802607	40	5.6	40	82	2	250	24	26	23	25	2.00
52810490--52810709	40	5.6	40	80	3	232	25	25	23	25	2.00
52814694--52814985	147	2.0	147	98	0	566	30	20	11	36	1.88
52832134--52832182	17	2.9	16	79	8	53	28	26	14	30	1.95
52834773--52834799	3	9.0	3	100	0	54	33	0	0	66	0.92
52834742--52834787	24	2.0	23	83	12	58	36	2	6	54	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52834789--52834830	16	2.7	16	78	14	52	42	0	0	57	0.99
52842158--52842201	16	2.6	17	82	7	54	38	0	25	36	1.56
52856813--52856853	18	2.1	21	86	13	61	65	0	17	17	1.27
52856813--52856854	21	2.0	22	85	4	59	66	0	16	16	1.25
52858526--52858566	17	2.3	18	87	4	57	48	2	4	43	1.37
52859393--52859464	26	2.8	26	81	6	94	34	18	8	38	1.80
52877478--52877700	79	2.8	78	82	9	265	24	27	22	25	2.00
52877478--52877700	39	5.7	40	86	8	266	24	27	22	25	2.00
52885458--52885719	39	6.7	40	88	7	337	24	27	22	25	2.00
52892809--52892835	13	2.1	13	100	0	54	22	14	22	40	1.90
52893323--52893352	15	2.0	15	100	0	60	26	20	6	46	1.75
52896042--52896093	23	2.3	23	90	6	79	17	15	25	42	1.88
52897835--52897988	42	3.7	41	77	10	168	31	23	14	30	1.95
52903936--52903991	25	2.2	26	87	6	80	28	19	25	26	1.99
52907607--52907636	15	1.9	16	93	6	53	40	26	0	33	1.57
52907807--52907960	42	3.7	41	75	10	150	31	24	14	29	1.94
52917305--52917360	28	2.0	28	100	0	112	50	7	10	32	1.64
52930910--52930935	13	2.0	13	100	0	52	15	38	30	15	1.88
52936054--52936231	27	6.6	27	83	3	205	26	15	28	29	1.96
52936055--52936210	82	1.9	81	88	3	233	26	15	28	29	1.96
52936051--52936231	82	2.2	81	83	2	229	27	15	27	29	1.96
52940395--52940478	35	2.4	35	80	4	98	23	8	21	46	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52948805--52948843	21	1.9	20	89	5	60	46	20	0	33	1.51
52950137--52950361	111	2.0	110	96	0	414	32	28	19	20	1.97
52951212--52951295	42	2.0	42	95	0	150	25	26	19	29	1.98
52951597--52951626	12	2.4	13	94	5	53	43	16	0	40	1.48
52960814--52960853	21	1.9	21	84	0	53	45	10	32	12	1.75
52967978--52968153	46	3.8	45	81	11	171	23	29	21	26	1.99
52971356--52971380	13	1.9	13	100	0	50	40	4	16	40	1.67
52972088--52972116	13	2.1	14	93	6	51	44	0	10	44	1.38
52973389--52973495	28	3.9	27	77	9	101	34	20	24	20	1.96
52974576--52974608	17	1.9	17	93	0	57	66	0	27	6	1.15
52976594--52976659	25	3.0	21	75	16	78	28	1	15	54	1.50
52977899--52977959	29	2.1	30	87	3	88	62	1	3	32	1.21
52978035--52978078	19	2.2	20	92	4	72	47	13	13	25	1.79
52978062--52978092	14	2.2	14	94	0	53	38	19	9	32	1.84
52984229--52984443	46	4.7	44	74	13	157	24	28	18	28	1.98
52984276--52984445	94	1.8	92	89	5	270	25	27	18	28	1.98
52984277--52984448	46	3.7	46	75	16	174	24	28	18	29	1.98
52991598--52991659	25	2.5	24	84	10	72	3	24	0	72	0.99
52991598--52991638	5	8.2	5	84	10	57	0	21	0	78	0.76
52995756--52996112	40	8.9	40	91	0	570	27	20	28	24	1.99
53004094--53004421	40	8.2	40	92	0	548	27	20	27	24	1.99
53007394--53007507	43	2.7	42	75	6	122	31	25	11	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53009468--53009700	116	2.0	116	100	0	466	28	12	24	34	1.91
53011567--53011622	27	2.2	25	81	12	76	21	21	21	35	1.96
53015332--53015414	27	3.1	27	92	0	139	20	21	21	36	1.96
53020266--53020339	29	2.6	29	89	4	105	25	16	32	25	1.96
53028638--53028711	29	2.5	30	84	6	98	25	16	31	27	1.96
53040874--53041237	50	7.5	50	77	8	269	23	30	18	27	1.98
53040874--53041201	98	3.4	95	80	5	277	23	30	17	27	1.97
53040875--53041239	145	2.5	144	79	8	366	23	30	18	27	1.98
53044642--53044718	29	2.7	29	87	4	111	24	18	28	28	1.98
53044629--53044739	29	3.9	29	78	11	104	27	14	28	29	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344