genome.fa.s10.2.7.7.80.10.50.1000.209.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  209  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69219037--69219094	15	3.8	15	86	2	80	53	12	0	34	1.38
69220263--69220309	22	2.1	22	84	7	60	4	38	0	57	1.18
69220364--69220415	5	10.2	5	97	2	95	57	0	0	42	0.98
69220664--69220698	13	2.7	13	100	0	70	45	0	0	54	0.99
69222830--69222854	6	4.2	6	100	0	50	52	0	0	48	1.00
69232143--69232210	23	2.9	23	79	12	68	42	0	4	52	1.21
69234447--69234497	21	2.4	22	86	3	68	31	1	7	58	1.37
69234447--69234524	32	2.5	30	76	13	77	30	1	8	58	1.37
69255250--69255416	83	2.0	83	96	0	307	38	9	13	38	1.77
69262894--69262937	17	2.5	17	81	3	52	52	0	6	40	1.28
69263420--69263451	6	5.3	6	100	0	64	46	15	18	18	1.84
69263917--69263961	17	2.6	18	82	7	65	42	4	0	53	1.21
69270892--69270993	42	2.4	44	80	6	104	27	17	25	29	1.98
69273383--69273557	94	1.9	95	88	1	271	21	25	22	30	1.99
69273381--69273566	48	3.9	48	80	3	214	22	25	22	30	1.99
69281635--69281895	30	8.8	29	73	9	127	21	25	13	39	1.90
69281641--69281868	119	1.9	119	88	0	339	21	26	13	39	1.90
69281641--69281895	119	2.1	118	85	1	330	21	25	13	39	1.90
69284669--69284773	27	3.9	26	83	5	102	40	16	9	34	1.81
69284708--69284773	27	2.4	27	92	0	105	39	16	10	33	1.83
69284684--69284790	54	2.0	54	81	7	128	39	19	10	30	1.85
69284768--69284828	27	2.3	27	82	0	68	34	29	6	29	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69284779--69284989	27	7.8	27	87	2	253	28	24	7	39	1.82
69284860--69285191	27	12.2	27	80	9	104	36	20	8	34	1.83
69284725--69285000	81	3.4	81	75	5	216	31	23	7	37	1.84
69284766--69285001	54	4.4	54	78	2	177	31	23	7	37	1.82
69284941--69285217	54	5.1	53	71	13	150	38	20	8	32	1.83
69284982--69285219	27	8.7	27	76	9	189	40	19	8	31	1.81
69285238--69285315	27	2.9	27	75	11	79	35	20	20	23	1.96
69286475--69286522	25	1.9	25	91	0	78	35	25	14	25	1.94
69286561--69286617	9	5.9	9	73	15	51	35	8	21	35	1.84
69286559--69286629	20	3.5	20	94	0	124	35	11	21	32	1.89
69286570--69286624	11	5.4	11	70	16	55	36	12	20	30	1.90
69286676--69286770	25	3.8	25	95	1	165	28	21	23	27	1.99
69286675--69286796	25	5.0	24	88	7	158	29	21	22	26	1.99
69286676--69286797	49	2.5	49	86	9	151	29	21	22	26	1.99
69286990--69287053	31	2.1	31	90	0	101	35	15	23	25	1.94
69294301--69294356	24	2.4	25	75	22	59	26	16	17	39	1.91
69300050--69300089	21	2.0	20	85	5	53	20	27	37	15	1.92
69301273--69301395	49	2.5	49	84	9	153	20	28	23	27	1.99
69301370--69301482	44	2.6	44	88	0	172	34	31	15	17	1.92
69306012--69306044	13	2.4	14	95	5	59	57	12	0	30	1.35
69309448--69309601	80	1.9	80	95	0	281	26	21	14	37	1.92
69312824--69312886	28	2.2	29	91	2	101	33	6	17	42	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69325006--69325047	19	2.2	19	86	0	57	40	4	0	54	1.21
69328188--69328252	25	2.5	26	80	5	69	67	3	10	18	1.33
69328188--69328262	25	3.0	24	75	9	60	66	5	9	18	1.39
69329542--69329577	13	2.7	13	91	4	54	69	2	0	27	1.02
69330130--69330187	10	6.2	10	73	13	52	34	0	0	65	0.93
69334019--69334068	27	1.9	26	88	8	75	16	20	0	64	1.30
69341031--69341257	40	5.7	40	94	1	393	22	25	20	30	1.98
69349616--69349843	40	5.7	40	96	0	411	21	27	19	31	1.97
69350648--69350687	20	2.0	21	85	5	55	40	5	5	50	1.46
69369731--69369922	40	4.8	41	89	2	248	22	21	30	25	1.99
69378817--69378862	21	2.2	21	96	0	83	32	8	17	41	1.80
69379089--69379126	20	1.9	20	94	0	67	39	2	23	34	1.69
69379610--69379661	25	2.1	24	85	3	68	17	21	21	40	1.91
69382366--69382422	30	1.9	29	85	3	78	45	1	7	45	1.40
69389327--69389453	47	2.7	45	78	14	134	28	18	28	25	1.98
69389527--69389639	49	2.3	49	81	4	129	25	19	30	24	1.98
69403655--69403689	17	2.1	17	100	0	70	48	11	5	34	1.63
69408697--69408790	21	4.4	21	86	2	116	34	23	24	18	1.96
69408697--69408805	42	2.5	43	80	2	139	33	21	24	20	1.97
69409175--69409232	15	3.8	15	88	2	89	51	12	0	36	1.39
69410503--69410544	5	8.2	5	97	2	75	57	0	0	42	0.99
69412217--69412284	31	2.2	31	94	0	118	36	7	14	41	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69417730--69417760	11	2.8	11	95	0	53	19	48	3	29	1.64
69418306--69418398	18	5.2	18	88	0	141	29	24	15	31	1.95
69422447--69422477	11	2.8	11	95	0	53	19	48	3	29	1.64
69426239--69426294	23	2.3	24	85	11	71	37	0	0	62	0.95
69427241--69427286	20	2.3	19	85	11	56	19	0	13	67	1.23
69436048--69436119	21	3.3	21	68	19	58	20	12	25	41	1.87
69436040--69436130	45	2.0	45	89	0	137	21	13	24	40	1.89
69439091--69439148	29	2.0	29	100	0	116	34	6	27	31	1.83
69442095--69442143	16	3.1	16	80	11	64	24	0	4	71	1.03
69443265--69443310	25	1.9	23	86	8	65	63	8	0	28	1.24
69443300--69443339	12	3.3	12	82	0	53	82	7	0	10	0.84
69443528--69443573	17	2.7	18	73	10	51	56	0	0	43	0.99
69446589--69446658	21	3.2	21	64	18	52	21	8	25	44	1.80
69446584--69446671	45	2.0	45	93	0	149	23	9	26	40	1.84
69459271--69459326	28	2.0	29	85	3	78	21	35	16	26	1.94
69469057--69469228	43	4.0	43	77	6	177	32	25	16	25	1.96
69477491--69477676	67	2.8	67	80	9	177	31	16	29	22	1.95
69477515--69477698	67	2.8	64	77	8	194	29	16	29	23	1.96
69481785--69481823	10	3.8	10	93	6	69	33	17	17	30	1.94
69481784--69481823	21	1.9	21	100	0	80	35	17	17	30	1.93
69481870--69481939	25	2.8	25	86	0	95	27	20	22	30	1.98
69481869--69481952	25	3.4	25	78	14	77	29	17	22	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69490831--69490976	43	3.4	42	80	11	138	32	28	16	23	1.96
69507790--69507959	40	4.3	40	89	0	225	26	28	21	24	1.99
69511811--69511867	13	4.3	13	73	4	51	43	0	19	36	1.51
69511896--69511959	30	2.1	30	91	0	101	50	6	17	26	1.69
69519128--69519178	21	2.4	21	100	0	102	31	11	7	49	1.68
69524656--69524775	47	2.6	46	82	11	138	29	19	29	22	1.98
69529505--69529555	27	1.9	26	88	4	75	31	21	23	23	1.98
69534337--69534440	27	3.9	27	82	10	115	18	22	21	38	1.93
69544045--69544121	22	3.5	22	90	0	127	11	36	31	20	1.89
69547332--69547451	46	2.6	46	90	0	195	20	20	26	32	1.97
69560227--69560278	22	2.3	23	87	6	72	25	28	15	30	1.96
69564020--69564128	27	4.1	26	87	5	146	38	22	23	15	1.92
69565510--69565615	24	4.4	23	88	7	140	18	36	5	38	1.75
69571877--69571987	27	4.2	26	81	5	114	39	23	21	15	1.91
69573374--69573468	12	7.9	12	65	9	50	21	37	6	34	1.79
69573370--69573475	24	4.4	23	90	7	149	18	37	5	37	1.75
69586277--69586316	20	2.0	21	85	5	55	42	0	20	37	1.52
69599876--69599954	41	1.9	41	94	0	140	35	20	7	36	1.81
69600138--69600240	42	2.5	42	74	6	109	33	27	16	22	1.95
69600197--69600292	48	2.0	46	86	9	131	28	25	16	30	1.97
69600319--69600421	37	2.8	37	91	2	154	25	28	17	29	1.97
69609860--69609900	16	2.6	16	88	7	57	43	2	31	21	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69611734--69611797	29	2.2	29	82	0	74	20	7	17	54	1.67
69611749--69611815	29	2.3	28	73	16	64	22	10	14	52	1.72
69612862--69612919	12	4.6	12	77	12	62	56	6	1	34	1.36
69612890--69612936	24	2.0	24	83	8	60	61	2	2	34	1.20
69617012--69617051	13	3.2	13	82	3	55	20	15	17	47	1.83
69629312--69629402	46	2.0	46	100	0	182	43	18	6	30	1.76
69630103--69630160	29	2.0	30	93	3	100	20	43	0	36	1.52
69630382--69630413	16	1.9	17	93	6	57	28	31	0	40	1.57
69630540--69630586	17	2.8	17	79	20	62	36	2	6	55	1.37
69632160--69632199	17	2.4	17	82	0	53	17	15	15	52	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344