Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  325  of  344  ( 41197 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106193119--106193193
31
2.4
30
81
16
91
53
2
13
30
1.53
106193139--106193218
31
2.6
31
82
7
85
56
3
12
27
1.53
106201940--106201999
28
2.1
28
87
6
86
48
1
5
45
1.34
106204389--106204439
24
2.0
27
85
14
72
25
1
11
60
1.41
106204441--106204485
22
2.0
23
83
12
58
35
2
4
57
1.31
106205146--106205226
23
3.3
23
72
21
67
33
13
2
50
1.55
106209195--106209245
14
3.7
14
75
21
54
27
7
1
62
1.33
106209222--106209314
44
2.1
44
84
4
116
31
6
2
60
1.34
106209209--106209359
3
50.3
3
69
10
76
29
9
2
58
1.43
106209495--106209576
24
3.2
26
72
19
64
32
4
6
56
1.45
106209608--106209660
23
2.5
22
82
11
65
33
1
9
54
1.43
106209708--106209771
24
2.6
25
82
5
76
35
3
6
54
1.41
106209338--106209806
252
1.9
248
82
9
583
33
4
6
56
1.44
106209866--106209934
25
2.7
25
79
2
84
33
5
7
53
1.52
106212108--106212266
84
1.9
87
86
7
236
27
11
6
53
1.63
106213131--106213179
25
2.0
25
84
4
64
63
8
0
28
1.23
106213143--106213207
25
2.9
23
80
15
66
66
7
0
26
1.19
106213169--106213207
19
2.0
20
90
5
62
71
7
0
20
1.10
106213170--106213213
20
2.2
20
84
8
54
75
6
0
18
1.02
106215098--106215128
16
1.9
16
93
0
53
29
16
12
41
1.85
106219839--106219869
16
1.9
16
93
0
53
29
16
12
41
1.85
106222216--106222326
31
3.7
30
79
12
104
33
10
14
41
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106222277--106222342
31
2.1
31
91
0
105
34
10
10
43
1.74
106222758--106223013
87
3.0
87
85
4
333
38
21
8
31
1.83
106223234--106223381
10
15.4
10
67
14
62
31
4
2
61
1.28
106223257--106223397
19
7.4
19
69
21
66
32
4
2
60
1.27
106223255--106223397
10
15.0
10
67
20
65
32
4
2
61
1.27
106223236--106223375
56
2.5
56
82
5
158
32
5
2
60
1.30
106223296--106223412
56
2.1
55
80
12
123
36
3
1
58
1.25
106223484--106223710
90
2.6
87
85
10
300
33
8
21
37
1.83
106225034--106225081
21
2.3
21
82
10
64
39
35
4
20
1.72
106225520--106225586
15
4.5
15
76
12
50
62
2
0
34
1.10
106225974--106226011
19
2.1
18
85
9
51
39
13
2
44
1.57
106241164--106241220
27
2.1
27
86
3
78
57
5
5
31
1.43
106241991--106242045
24
2.4
23
88
11
78
56
0
9
34
1.31
106244039--106244063
12
2.1
12
100
0
50
8
8
44
40
1.63
106244370--106244412
15
2.7
15
83
16
52
48
0
0
51
1.00
106244373--106244410
17
2.2
17
86
9
51
52
0
0
47
1.00
106245205--106245238
18
1.9
17
94
5
59
29
5
11
52
1.61
106248570--106248609
20
2.0
20
90
4
64
45
10
7
37
1.66
106251418--106251469
20
2.6
19
82
11
61
61
9
1
26
1.38
106260078--106260149
20
3.7
19
75
16
58
43
1
0
55
1.08
106260078--106260118
20
2.0
21
86
13
59
39
0
0
60
0.96
106280976--106281025
23
2.2
23
96
0
91
46
22
0
32
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106288810--106288845
13
2.8
14
84
16
51
27
25
0
47
1.52
106288797--106288837
18
2.2
19
87
12
59
29
24
0
46
1.53
106288942--106289022
23
3.5
23
96
0
153
46
40
3
8
1.52
106289280--106289320
10
4.3
10
81
12
50
31
24
0
43
1.54
106289513--106289563
15
3.3
15
80
2
66
49
7
1
41
1.43
106290294--106290340
15
2.9
15
79
14
58
4
29
10
55
1.53
106293599--106293639
20
2.0
20
90
0
64
56
2
0
41
1.13
106293906--106294056
75
2.0
75
100
0
302
39
17
3
39
1.68
106295726--106295765
9
4.8
8
88
11
62
62
0
0
37
0.95
106295726--106295765
17
2.4
17
100
0
80
62
0
0
37
0.95
106296066--106296123
29
2.0
29
83
6
73
34
13
10
41
1.79
106296831--106296895
30
2.2
30
86
8
89
38
3
1
56
1.24
106296824--106296884
20
3.1
19
74
9
59
32
4
1
60
1.28
106296847--106296905
30
2.0
30
86
6
84
38
3
0
57
1.15
106298596--106298746
57
2.7
58
81
12
179
21
29
31
17
1.96
106304357--106304419
31
2.0
31
90
0
99
36
15
6
41
1.73
106307295--106307344
16
3.2
15
78
10
55
22
26
0
52
1.48
106310729--106310757
3
9.7
3
100
0
58
0
31
0
68
0.89
106316506--106316549
19
2.3
19
81
18
56
36
0
4
59
1.18
106316665--106316717
25
2.1
25
82
6
63
56
7
0
35
1.28
106328405--106328438
17
1.9
17
94
5
59
55
0
0
44
0.99
106330833--106330866
16
2.1
17
89
10
54
70
0
0
29
0.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106346513--106346780
104
2.6
105
93
1
450
29
30
20
18
1.97
106347115--106347172
30
1.9
30
82
0
71
29
24
8
37
1.85
106352578--106352624
15
3.1
14
77
22
51
25
4
2
68
1.19
106355681--106355732
16
3.2
16
91
0
86
26
0
34
38
1.57
106355943--106355986
16
2.8
15
86
6
52
50
0
0
50
1.00
106355948--106355995
15
3.3
15
82
11
55
54
0
0
45
0.99
106356254--106356306
27
2.1
27
82
10
67
43
0
0
56
0.99
106360374--106360422
3
16.3
3
91
0
80
34
4
0
61
1.15
106362015--106362066
11
4.8
11
83
2
70
23
7
1
67
1.27
106362003--106362072
22
3.2
22
83
2
79
21
7
4
67
1.33
106362003--106362072
11
6.5
11
78
3
61
21
7
4
67
1.33
106362036--106362083
22
2.2
22
81
7
53
25
2
6
66
1.26
106362192--106362236
23
2.0
23
86
8
65
26
2
0
71
0.98
106371186--106371249
31
2.1
31
84
0
83
57
6
7
28
1.51
106373976--106374025
26
2.0
26
84
11
68
68
4
0
28
1.08
106375033--106375072
21
2.0
21
85
9
57
30
0
7
62
1.23
106380769--106380817
21
2.5
20
93
6
82
32
6
4
57
1.42
106380772--106380839
35
1.9
35
85
5
93
33
5
5
54
1.49
106382344--106382411
30
2.3
30
79
5
75
32
42
14
10
1.80
106382468--106382510
18
2.4
18
88
0
59
18
27
6
46
1.75
106386412--106386459
20
2.3
21
80
16
55
39
0
10
50
1.37
106386464--106386498
18
2.1
18
89
10
56
51
5
0
42
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106404033--106404073
21
2.0
21
81
18
50
31
19
26
21
1.97
106416794--106416910
58
2.0
58
100
0
234
38
20
13
27
1.90
106422968--106423670
226
3.0
235
88
4
1100
33
14
19
32
1.92
106432556--106432582
14
1.9
14
100
0
54
77
0
22
0
0.76
106442183--106442221
20
2.0
20
85
10
53
53
2
7
35
1.43
106448625--106448683
30
1.9
31
83
10
77
20
13
23
42
1.88
106454746--106454792
22
2.2
21
84
3
58
36
21
8
34
1.84
106454763--106454841
19
4.2
19
87
9
117
35
15
10
39
1.81
106454763--106454835
36
2.0
38
91
5
123
35
13
10
39
1.80
106454764--106454851
36
2.4
35
83
14
108
35
14
10
39
1.80
106458014--106458051
13
2.7
14
88
8
51
34
18
2
44
1.64
106458532--106458821
48
6.0
47
83
7
278
31
25
15
27
1.95
106458532--106458806
94
2.8
94
80
7
239
30
25
16
27
1.96
106476067--106476095
11
2.6
11
100
0
58
31
10
17
41
1.83
106492577--106492614
19
2.0
19
89
0
58
65
2
0
31
1.06
106492601--106492658
21
2.8
21
76
5
55
53
0
1
44
1.10
106498435--106498471
2
18.5
2
88
0
56
45
0
5
48
1.25
106498435--106498468
12
2.8
12
100
0
68
44
0
5
50
1.26
106501073--106501232
87
1.8
87
91
0
266
20
23
20
36
1.95
106501076--106501242
44
3.8
44
71
7
151
20
23
20
35
1.96
106501643--106501773
66
2.0
66
92
0
217
38
12
19
29
1.88
106505136--106505202
31
2.2
31
86
0
89
56
19
7
16
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106505445--106505494
21
2.4
21
93
0
82
0
48
22
30
1.51
106505914--106505942
14
2.1
14
93
6
51
58
6
0
34
1.25
106506109--106506147
17
2.4
17
86
4
53
48
0
10
41
1.37
106511149--106511428
9
30.6
9
75
9
181
37
1
13
47
1.52
106511149--106511428
18
15.3
18
75
8
208
37
1
13
47
1.52
106511533--106511588
15
3.8
15
78
21
73
53
0
0
46
1.00
106511762--106511832
24
3.0
24
85
8
108
45
7
19
28
1.76
106511880--106512013
64
2.1
64
94
0
232
44
4
11
38
1.62
106514446--106514480
16
2.2
16
90
10
54
74
2
0
22
0.95
106514595--106514643
16
2.9
16
85
11
62
48
4
8
38
1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344