genome.fa.s10.2.7.7.80.10.50.1000.208.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  208  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68941156--68941210	15	3.9	14	81	9	58	81	10	0	7	0.86
68941179--68941210	9	3.4	9	91	8	55	87	3	0	9	0.64
68947516--68947563	18	2.6	19	80	12	55	66	6	2	25	1.26
68947728--68947765	20	1.9	20	84	10	51	63	2	2	31	1.22
68947823--68947860	19	2.0	19	89	0	58	60	2	5	31	1.33
68948972--68949008	17	2.0	20	85	15	53	8	10	43	37	1.69
68949396--68949616	76	2.8	79	87	7	319	24	19	21	34	1.96
68961335--68961382	18	2.6	19	80	12	55	66	6	2	25	1.26
68961544--68961581	20	1.9	20	84	10	51	63	2	2	31	1.22
68961639--68961676	19	2.0	19	89	0	58	60	2	5	31	1.33
68962790--68962826	17	2.0	20	85	15	53	8	10	43	37	1.69
68964473--68964505	17	1.9	17	88	11	50	48	18	0	33	1.48
68968025--68968091	5	12.6	5	73	10	53	55	0	2	41	1.15
68968029--68968094	18	3.9	18	73	15	68	57	0	3	39	1.14
68968031--68968091	32	1.9	32	86	0	86	55	0	3	40	1.16
68977243--68977275	5	6.6	5	92	0	57	42	33	0	24	1.55
68981734--68981777	20	2.2	20	95	0	79	34	36	20	9	1.84
68986724--68986816	45	2.1	45	89	0	141	18	19	21	40	1.91
68986819--68986949	59	2.2	59	91	0	208	16	20	22	41	1.90
68987054--68987228	18	9.3	18	68	14	57	37	12	13	36	1.83
68997012--68997133	47	2.6	47	96	0	217	35	14	24	25	1.94
68997112--68997308	54	3.6	54	82	4	236	36	17	23	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69004027--69004214	23	8.2	22	84	8	191	23	20	26	30	1.98
69004016--69004204	46	4.1	45	88	2	261	23	20	26	29	1.99
69004016--69004214	69	2.9	68	83	4	247	24	20	26	29	1.99
69007082--69007271	55	3.5	54	81	9	194	36	17	22	23	1.95
69012065--69012116	17	3.2	16	79	12	61	11	3	7	76	1.12
69014552--69014712	40	4.0	39	74	9	128	32	18	22	25	1.97
69015322--69015361	21	1.9	21	85	10	55	52	20	2	25	1.59
69015431--69015524	21	4.4	22	73	7	77	50	23	1	25	1.56
69015484--69015536	21	2.5	21	84	0	70	54	24	0	20	1.44
69015888--69015913	3	8.7	3	100	0	52	69	0	0	30	0.89
69016152--69016297	75	1.9	74	83	8	188	32	18	16	32	1.93
69016013--69016427	188	2.2	188	81	8	466	34	19	15	30	1.93
69018236--69018283	24	2.0	24	91	0	78	27	20	8	43	1.80
69018499--69018614	19	5.8	19	71	21	87	43	0	5	51	1.24
69018533--69018584	22	2.3	23	93	3	88	42	0	7	50	1.31
69018499--69018614	61	1.9	62	96	1	216	43	0	5	51	1.24
69018519--69018643	29	4.2	29	73	15	103	44	0	3	51	1.23
69018916--69019036	9	13.7	9	84	5	113	46	21	1	30	1.61
69018873--69018935	32	2.0	31	81	12	74	46	17	4	31	1.69
69024528--69024567	15	2.7	15	88	0	53	35	15	47	2	1.58
69024543--69024597	21	2.6	21	80	11	67	36	21	41	0	1.54
69024838--69024903	31	2.1	31	88	0	96	16	9	21	53	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69027953--69027995	17	2.5	17	85	14	54	41	0	2	55	1.12
69027953--69027995	16	2.6	16	85	14	52	41	0	2	55	1.12
69027964--69028049	19	4.7	18	69	12	50	33	0	6	59	1.24
69027984--69028028	19	2.4	20	78	14	51	37	0	8	53	1.32
69028823--69028859	14	2.7	14	95	4	67	8	5	0	86	0.70
69030989--69031039	23	2.3	23	83	12	63	19	7	3	68	1.30
69037368--69037680	27	11.6	28	80	9	305	40	22	8	29	1.83
69037368--69037681	81	3.9	81	85	2	364	40	22	8	29	1.83
69037634--69037724	27	3.4	27	86	3	94	39	17	15	27	1.90
69042036--69042080	19	2.4	19	85	7	56	28	22	8	40	1.84
69046836--69046883	25	1.9	25	83	8	62	52	16	14	16	1.76
69054261--69054330	28	2.6	27	82	8	81	32	8	2	55	1.45
69060227--69060277	24	2.1	24	88	0	75	52	9	5	31	1.58
69062196--69062244	24	2.0	24	84	0	62	53	10	6	30	1.59
69063129--69063240	50	2.2	50	83	0	143	34	25	15	24	1.94
69064010--69064060	24	2.1	24	96	0	93	33	19	5	41	1.76
69066668--69066725	22	2.6	22	81	10	55	29	8	0	62	1.25
69066927--69066978	3	17.7	3	80	4	61	32	1	3	61	1.25
69067072--69067136	27	2.4	27	84	5	87	38	6	3	52	1.42
69067166--69067277	12	9.3	12	67	23	51	33	3	3	58	1.32
69067221--69067279	18	3.2	18	80	17	68	30	3	1	64	1.20
69067337--69067382	20	2.3	20	85	7	58	23	6	4	65	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69071061--69071105	22	2.0	22	95	0	81	28	20	4	46	1.69
69078920--69079104	40	4.7	40	79	6	189	25	27	21	25	2.00
69078920--69079102	79	2.3	81	80	7	196	25	27	21	25	1.99
69082523--69082771	88	2.8	88	85	6	340	28	17	19	34	1.95
69082702--69083258	148	3.7	148	83	7	624	28	17	20	33	1.95
69082700--69083258	222	2.5	222	84	7	678	28	16	20	33	1.95
69082680--69083140	74	6.2	73	83	8	547	27	16	20	34	1.95
69083067--69083227	87	1.9	86	90	1	259	29	15	19	35	1.93
69083286--69083375	45	2.0	45	82	4	110	23	16	27	32	1.96
69083483--69083565	42	2.0	42	80	4	96	31	15	27	25	1.96
69083941--69083984	16	2.9	15	80	16	54	18	45	11	25	1.82
69084281--69084318	10	4.0	10	80	13	53	78	2	0	18	0.86
69084281--69084321	18	2.4	17	92	8	73	80	2	0	17	0.82
69084931--69084990	22	2.7	23	82	10	61	28	10	0	61	1.28
69085192--69085246	3	18.7	3	81	3	67	32	1	3	61	1.24
69085366--69085462	39	2.5	38	76	10	97	35	7	2	55	1.39
69085482--69085540	18	3.2	18	80	17	68	30	3	1	64	1.20
69089323--69089568	49	5.0	49	83	3	303	29	26	17	26	1.98
69089815--69089868	27	2.0	27	85	0	72	38	12	7	40	1.72
69095124--69095297	49	3.5	49	80	1	222	27	16	26	29	1.97
69095116--69095297	99	1.8	99	91	0	301	26	17	26	29	1.97
69100473--69100512	19	2.1	19	95	0	71	30	20	5	45	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69101805--69102036	127	1.8	127	90	0	374	31	15	15	37	1.90
69105424--69105473	12	4.2	12	82	7	57	50	18	24	8	1.73
69105613--69105774	84	1.9	84	91	2	263	29	34	17	19	1.94
69109333--69109725	40	9.8	40	93	0	660	22	27	20	29	1.98
69118429--69118460	7	4.6	7	100	0	64	31	0	0	68	0.90
69118552--69118602	24	2.1	24	100	0	102	15	25	21	37	1.93
69122761--69122926	40	4.2	39	82	3	170	17	27	14	40	1.88
69128161--69128287	46	2.7	47	85	9	172	29	16	29	24	1.97
69128347--69128515	49	3.5	49	80	4	155	28	20	26	24	1.99
69128245--69128515	142	1.9	146	82	8	351	27	18	27	26	1.98
69132938--69132976	21	1.9	20	84	5	51	43	12	15	28	1.83
69146180--69146210	16	1.9	16	100	0	62	51	22	6	19	1.69
69147430--69147476	8	5.9	8	78	9	51	48	21	21	8	1.76
69147437--69147476	16	2.5	16	87	0	62	47	22	22	7	1.76
69147696--69147751	29	1.9	29	88	0	85	25	16	33	25	1.95
69147705--69147814	29	3.8	29	86	2	132	26	14	33	25	1.94
69160141--69160175	17	1.9	19	88	11	56	65	5	11	17	1.43
69164533--69164574	21	2.0	21	100	0	84	33	4	9	52	1.55
69164666--69164808	68	2.1	68	98	0	277	48	5	6	39	1.54
69166520--69166591	36	2.0	36	100	0	144	38	27	13	19	1.90
69170105--69170146	15	3.0	14	83	10	50	38	14	9	38	1.78
69199374--69199407	16	2.1	16	100	0	68	47	17	17	17	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69201800--69201846	24	2.0	24	91	4	78	23	21	10	44	1.83
69206240--69206299	21	2.9	21	90	2	95	1	18	3	76	1.00
69206249--69206299	7	7.3	7	77	16	52	1	19	1	76	0.98
69210055--69210080	3	8.7	3	100	0	52	69	0	0	30	0.89
69211169--69211209	20	2.0	21	90	4	66	51	4	0	43	1.23
69211485--69211530	17	2.7	17	77	12	58	21	6	2	69	1.22
69216743--69216813	34	2.1	34	91	0	115	30	11	14	43	1.80
69216904--69217011	45	2.4	45	84	0	126	28	20	12	38	1.88
69218582--69218664	21	3.9	21	77	3	67	36	26	22	14	1.93
69218580--69218654	21	3.4	23	78	12	86	37	26	22	13	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344