genome.fa.s10.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  108  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36404480--36404647	45	3.7	45	87	1	239	27	20	16	35	1.94
36404479--36404649	90	1.9	90	91	2	281	26	21	16	35	1.95
36407088--36407147	30	2.0	30	87	6	86	36	8	26	28	1.85
36407797--36408026	100	2.3	99	86	5	304	26	17	26	30	1.98
36407802--36408037	49	4.8	49	83	2	283	26	17	26	29	1.98
36409955--36410002	23	2.1	23	84	7	62	39	4	2	54	1.32
36410003--36410041	19	2.1	18	85	4	51	41	0	5	53	1.23
36415100--36415300	108	1.8	110	85	4	282	34	16	23	25	1.96
36415539--36415569	16	1.9	16	93	0	53	41	0	22	35	1.54
36418851--36419023	46	3.7	46	79	13	210	21	20	28	29	1.98
36418848--36419018	93	1.8	93	94	0	306	21	21	29	28	1.98
36419248--36419285	19	2.0	20	85	15	53	39	0	21	39	1.53
36431670--36431702	17	1.9	17	93	0	57	39	36	3	21	1.69
36437936--36437990	28	2.0	28	100	0	110	41	21	18	18	1.90
36457591--36457856	47	5.8	43	69	11	138	25	19	30	24	1.98
36457647--36457859	91	2.3	90	80	5	232	24	20	30	25	1.99
36457735--36457856	47	2.7	44	83	6	147	22	19	29	27	1.98
36464376--36464593	47	4.7	46	72	13	160	26	19	28	25	1.99
36464376--36464645	94	2.9	94	79	7	262	27	20	28	24	1.99
36465403--36465523	55	2.2	55	81	13	144	27	22	24	25	2.00
36469310--36469481	93	1.8	93	87	2	256	30	30	18	21	1.97
36469302--36469471	46	3.7	44	77	10	171	31	30	17	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36473537--36473663	49	2.6	49	86	2	166	24	24	18	33	1.97
36473634--36473807	46	3.7	45	81	5	168	24	24	18	32	1.97
36474457--36474507	20	2.7	18	82	14	59	37	21	0	41	1.54
36477901--36477934	18	1.9	18	88	5	52	41	5	8	44	1.60
36477980--36478017	18	2.1	19	85	5	51	42	13	0	44	1.43
36487154--36487202	23	2.1	23	81	7	55	32	2	6	59	1.34
36491722--36491786	28	2.5	25	75	22	62	49	0	1	49	1.10
36494798--36494841	23	2.0	21	86	8	61	63	6	2	27	1.31
36494829--36494862	16	2.1	16	94	0	59	50	8	2	38	1.49
36499814--36499855	19	2.2	19	91	0	66	23	33	28	14	1.94
36500011--36500052	19	2.2	19	91	0	66	23	33	28	14	1.94
36499728--36500121	197	2.0	197	98	0	761	33	24	18	23	1.97
36503837--36503988	43	3.5	44	83	5	170	28	15	23	32	1.95
36506276--36506395	58	2.1	58	100	0	240	27	21	24	26	1.99
36506357--36506537	48	3.9	48	75	10	169	28	24	20	25	1.99
36513079--36513338	40	6.6	40	91	1	375	21	27	24	26	1.99
36515617--36515743	29	4.4	29	88	4	170	33	25	12	28	1.93
36515617--36515743	57	2.2	57	87	2	175	33	25	12	28	1.93
36523389--36523487	28	3.5	29	81	12	107	29	28	15	27	1.96
36529971--36530105	47	2.8	48	86	6	184	27	27	20	25	1.99
36529974--36530105	51	2.7	47	86	6	176	28	27	20	24	1.99
36572714--36572825	45	2.5	45	86	9	151	24	25	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36581054--36581238	79	2.3	80	83	7	216	26	27	21	24	1.99
36581054--36581238	40	4.6	41	77	10	195	26	27	21	24	1.99
36586050--36586198	27	5.5	27	82	4	174	28	15	26	29	1.96
36586050--36586198	55	2.7	55	81	4	176	28	15	26	29	1.96
36587549--36587726	27	6.6	27	84	3	205	29	28	15	26	1.96
36587570--36587725	82	1.9	81	88	3	233	29	28	15	26	1.96
36587549--36587738	82	2.3	83	78	12	221	30	27	14	27	1.95
36595643--36595819	27	6.5	27	84	3	203	29	27	15	27	1.96
36595663--36595818	82	1.9	81	88	3	233	29	28	15	26	1.96
36595643--36595831	82	2.3	83	78	12	219	30	26	14	27	1.95
36603053--36603084	16	1.9	17	93	6	57	53	12	21	12	1.71
36603424--36603608	79	2.3	81	84	5	234	25	28	22	23	1.99
36603424--36603608	40	4.7	40	83	5	232	25	28	22	23	1.99
36605698--36605822	61	2.0	61	98	0	241	43	5	16	34	1.72
36606097--36606229	45	3.0	45	95	0	230	23	22	27	27	1.99
36615138--36615260	55	2.2	56	88	2	176	26	12	28	33	1.92
36615138--36615260	28	4.4	28	90	2	176	26	12	28	33	1.92
36615163--36615273	28	4.0	27	90	3	116	28	11	26	33	1.91
36617728--36617819	27	3.4	27	80	7	105	16	22	22	38	1.93
36637305--36637414	54	2.0	54	100	0	220	42	10	13	32	1.79
36637654--36637869	40	5.4	40	89	2	278	24	22	26	25	2.00
36643937--36644080	9	16.0	9	67	17	59	37	2	16	43	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36643974--36644080	18	5.8	18	69	12	74	38	2	16	42	1.63
36644294--36644342	16	3.0	17	91	8	84	65	12	10	12	1.48
36647630--36648008	47	8.1	47	92	1	616	26	29	10	32	1.90
36647628--36647892	23	11.4	22	62	22	60	26	29	10	33	1.90
36647887--36647964	25	3.2	25	64	29	69	30	29	8	30	1.88
36651411--36651488	40	2.0	40	86	0	111	26	24	14	34	1.93
36651665--36651715	15	3.3	15	78	8	50	43	0	1	54	1.11
36652563--36652651	38	2.3	40	84	3	119	43	25	1	29	1.62
36652848--36652888	21	1.9	22	85	5	57	29	0	24	46	1.53
36657067--36657482	41	10.2	41	82	4	475	25	17	23	33	1.96
36657067--36657469	81	4.9	80	83	6	219	25	16	23	34	1.95
36657067--36657482	122	3.4	122	84	4	493	25	17	23	33	1.96
36658800--36658968	93	1.8	93	86	0	248	31	24	18	25	1.98
36658791--36659014	46	4.8	46	74	5	218	30	25	18	25	1.98
36660687--36660859	43	4.1	44	77	12	159	32	27	16	23	1.96
36661348--36661414	29	2.4	29	79	16	70	25	17	4	52	1.64
36662909--36663087	27	6.6	27	83	5	191	29	27	15	27	1.96
36662930--36663085	82	1.9	81	86	3	224	28	28	15	27	1.96
36663635--36663659	13	1.9	13	100	0	50	32	16	20	32	1.94
36664140--36664169	15	2.0	15	100	0	60	46	13	6	33	1.69
36667524--36667565	12	3.4	13	81	18	54	28	0	0	71	0.86
36667958--36668115	43	3.7	42	78	7	151	29	27	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36668617--36668683	29	2.4	29	79	16	70	25	17	4	52	1.64
36671168--36671298	46	2.8	46	86	2	165	23	32	7	35	1.83
36671284--36671703	47	8.9	47	93	1	646	25	28	11	35	1.90
36671371--36671442	22	3.1	22	64	24	58	25	29	13	31	1.94
36677720--36677852	45	3.0	45	93	0	221	27	27	21	24	1.99
36677679--36677852	90	2.0	87	84	5	224	27	27	21	24	1.99
36678033--36678556	261	2.0	261	98	0	1003	31	20	8	39	1.82
36681616--36681661	20	2.3	20	96	0	83	30	19	15	34	1.93
36684193--36684252	30	2.0	30	83	6	77	36	6	26	30	1.82
36684899--36685143	49	4.9	50	84	3	307	26	18	26	28	1.98
36684902--36685143	100	2.4	98	85	3	324	26	18	26	29	1.98
36687848--36687886	15	2.5	15	91	4	60	15	12	15	56	1.68
36689934--36689992	29	2.0	29	83	9	75	35	8	25	30	1.86
36690640--36690871	49	4.7	49	82	2	275	26	17	26	29	1.98
36694889--36695224	47	7.1	47	93	0	555	31	9	30	28	1.88
36695343--36695422	38	2.1	37	84	6	99	26	17	30	26	1.97
36698380--36698615	27	8.7	27	77	6	183	31	9	20	38	1.84
36698493--36698649	54	2.9	55	83	6	178	29	10	20	39	1.86
36698465--36698658	54	3.6	53	80	6	176	28	10	22	39	1.86
36698490--36698656	81	2.0	81	81	5	194	28	10	22	37	1.88
36698639--36698723	27	3.2	25	81	8	80	41	7	20	31	1.79
36698648--36698736	27	3.3	27	87	0	133	40	6	23	29	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36698637--36698764	54	2.4	53	76	8	141	37	8	21	32	1.84
36702506--36703011	128	3.9	128	81	6	562	29	26	17	26	1.98
36702501--36703034	86	6.2	86	80	6	566	29	25	17	26	1.98
36702501--36702995	171	2.9	168	81	8	545	29	26	17	26	1.98
36702501--36703011	43	11.9	43	79	9	508	29	26	17	26	1.98
36707333--36707368	18	2.0	18	88	0	54	27	33	8	30	1.86
36713245--36713471	40	5.7	40	96	0	409	18	19	29	32	1.96
36721040--36721186	40	3.7	40	90	0	231	19	19	27	33	1.96
36729988--36730025	19	2.0	20	85	15	53	39	23	0	36	1.55
36730255--36730425	93	1.8	93	89	2	272	29	27	20	22	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344