Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  287  of  344  ( 41197 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96243621--96243649
5
5.8
5
100
0
58
82
0
0
17
0.66
96244368--96244419
24
2.1
25
85
3
70
67
3
0
28
1.08
96245801--96245844
10
4.4
10
83
11
54
65
6
0
27
1.17
96245773--96245815
19
2.2
20
84
12
54
60
2
2
34
1.22
96247878--96247915
20
1.9
19
89
5
58
42
5
0
52
1.24
96248122--96248202
42
1.9
42
94
0
144
46
16
14
22
1.83
96249163--96249222
19
2.8
22
78
19
72
26
10
16
46
1.78
96249172--96249209
19
2.0
19
100
0
76
21
10
21
47
1.80
96253116--96253162
20
2.3
20
85
7
60
44
19
10
25
1.82
96259084--96259125
22
1.9
22
95
0
75
45
7
16
30
1.74
96259170--96259237
27
2.5
27
80
4
75
22
25
38
14
1.92
96259736--96259784
17
2.9
17
87
0
71
20
0
6
73
1.04
96259906--96259974
27
2.6
27
78
0
75
11
34
28
24
1.91
96259988--96260040
26
2.0
27
92
3
90
24
18
7
49
1.74
96260027--96260061
14
2.6
14
90
4
54
25
5
2
65
1.28
96261498--96261601
53
2.0
53
84
7
140
28
14
25
30
1.95
96262396--96262464
20
3.5
20
91
0
111
24
30
27
17
1.97
96270745--96270856
58
1.9
57
89
5
172
54
1
0
43
1.10
96270881--96270930
24
2.1
23
82
10
57
60
2
2
36
1.20
96272355--96272891
267
2.0
267
99
0
1065
42
18
10
27
1.84
96274447--96274477
6
5.2
6
100
0
62
16
0
32
51
1.44
96277212--96277329
40
3.0
40
87
0
173
29
26
18
25
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96279377--96279555
47
3.8
49
81
13
214
29
28
20
21
1.98
96279385--96279555
94
1.8
93
93
1
297
28
28
21
21
1.98
96279975--96280034
30
2.0
30
83
6
77
30
25
8
36
1.85
96286983--96287114
47
2.8
49
77
13
159
30
28
18
22
1.97
96288849--96288928
41
1.9
42
87
7
119
22
26
31
20
1.98
96302273--96302303
6
5.2
6
100
0
62
16
0
32
51
1.44
96305015--96305132
40
3.0
40
87
0
173
29
26
18
25
1.98
96307105--96307279
46
3.8
47
80
13
218
29
29
20
21
1.98
96307113--96307282
93
1.8
93
92
2
288
28
28
20
21
1.98
96314668--96314800
47
2.8
50
77
15
163
30
27
18
22
1.97
96315220--96315279
30
2.0
30
83
6
77
30
25
8
36
1.85
96318640--96318684
22
2.0
22
83
8
56
22
2
6
68
1.24
96318713--96318752
14
2.9
14
84
0
53
32
7
17
42
1.77
96318736--96318775
20
2.0
20
90
0
62
27
10
12
50
1.72
96318721--96318787
34
1.9
35
90
3
109
31
8
13
46
1.74
96318874--96318912
20
2.0
20
94
0
69
48
2
0
48
1.15
96318943--96318995
17
3.2
15
80
17
52
41
1
1
54
1.22
96322433--96322470
18
2.1
18
95
0
67
44
0
55
0
0.99
96322433--96322484
24
2.2
24
82
0
59
44
0
53
1
1.11
96325759--96325787
11
2.5
12
94
5
51
51
0
3
44
1.18
96330181--96331781
630
2.5
630
96
1
2942
32
19
13
33
1.91
96332367--96332525
48
3.3
48
90
1
230
20
14
14
50
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96338004--96338028
12
2.1
12
100
0
50
52
16
16
16
1.76
96341642--96341687
3
15.3
3
95
0
83
69
0
30
0
0.89
96343599--96343633
14
2.4
14
95
4
61
28
8
0
62
1.24
96352405--96352499
48
2.0
47
97
2
181
42
13
6
37
1.70
96359119--96359161
18
2.4
18
88
7
61
58
0
0
41
0.98
96360539--96360978
126
3.5
125
82
5
467
33
13
29
23
1.93
96368179--96368232
26
2.1
27
82
6
67
24
14
24
37
1.93
96368196--96368271
26
2.8
27
82
4
82
27
13
22
36
1.91
96369712--96369819
26
4.2
26
93
0
189
36
24
7
32
1.83
96372348--96372394
24
2.0
24
84
16
62
31
0
17
51
1.46
96372921--96372951
12
2.6
12
100
0
62
48
0
19
32
1.49
96374549--96374882
41
8.2
41
88
1
465
36
26
19
18
1.94
96374549--96374882
122
2.7
123
88
2
494
36
26
19
18
1.94
96375011--96375045
17
2.0
17
88
5
52
20
0
14
65
1.26
96375769--96375821
20
2.6
21
78
3
72
11
1
33
52
1.48
96376163--96376573
32
13.8
31
65
25
146
47
2
2
47
1.27
96376164--96376580
60
7.1
60
72
17
247
47
2
2
48
1.28
96376337--96376381
21
2.1
21
84
8
56
44
0
2
53
1.13
96376399--96376441
21
2.0
21
86
8
61
48
4
0
46
1.22
96376293--96376438
59
2.4
60
80
6
188
47
2
1
47
1.24
96376444--96376529
20
4.3
20
66
15
61
45
2
3
48
1.32
96376171--96376650
147
3.3
147
93
1
838
47
2
2
47
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96376483--96376527
21
2.1
21
84
8
56
44
2
4
48
1.35
96376939--96376980
22
1.9
22
85
0
57
35
38
2
23
1.68
96377846--96377903
17
3.6
16
86
6
82
43
46
0
10
1.38
96378988--96379049
23
2.9
21
74
9
61
40
1
0
58
1.08
96379213--96379277
8
7.8
9
77
13
68
33
3
0
63
1.10
96379213--96379277
3
23.3
3
76
14
68
33
3
0
63
1.10
96379230--96379269
11
3.5
11
93
3
62
35
5
0
60
1.19
96379096--96379662
187
3.0
193
89
5
873
28
7
4
59
1.44
96379539--96379620
17
4.6
16
74
18
58
35
4
2
57
1.33
96379581--96379630
15
3.3
15
81
13
59
36
6
0
58
1.23
96379685--96379710
13
2.0
13
100
0
52
38
0
0
61
0.96
96383087--96383324
39
6.1
39
95
0
413
22
30
24
22
1.99
96384348--96384404
9
6.7
9
76
11
66
28
0
10
61
1.29
96384347--96384395
16
3.0
16
90
3
80
30
0
10
59
1.31
96387435--96387727
103
2.9
102
89
5
431
34
6
3
54
1.45
96387994--96388047
9
6.0
9
75
0
54
48
14
1
35
1.55
96387994--96388084
18
5.2
18
70
10
71
48
14
1
36
1.51
96393132--96393160
14
2.1
14
93
6
51
34
0
10
55
1.34
96393130--96393169
15
2.8
15
85
11
57
32
0
15
52
1.43
96396537--96396590
21
2.6
21
87
0
81
31
20
48
0
1.50
96396827--96396907
31
2.5
33
84
8
112
11
6
22
60
1.52
96399214--96399409
103
1.9
101
82
4
241
32
16
24
26
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96401352--96401468
51
2.3
51
93
0
198
35
16
22
25
1.94
96405942--96406049
51
2.1
51
91
0
171
31
16
25
26
1.97
96409121--96409231
42
2.6
43
81
4
136
30
25
17
27
1.97
96409121--96409276
85
1.8
85
80
5
190
30
26
16
26
1.96
96413095--96413128
17
2.0
17
94
0
59
38
5
5
50
1.51
96414506--96414652
66
2.2
66
80
10
158
23
30
25
21
1.99
96418171--96418253
25
3.4
24
86
6
114
31
21
16
30
1.96
96418302--96418368
20
3.3
20
89
0
107
32
20
13
32
1.92
96424161--96424204
19
2.3
20
84
7
56
27
22
11
38
1.88
96426788--96426817
8
3.6
8
91
8
51
73
13
0
13
1.10
96428915--96429237
85
3.7
87
92
2
517
29
22
24
24
1.99
96428915--96429363
87
5.2
87
86
2
523
27
21
25
25
1.99
96431406--96431438
2
16.5
2
93
0
57
48
0
3
48
1.17
96431405--96431533
61
2.2
57
79
10
136
38
5
6
49
1.51
96439608--96439634
6
4.5
6
100
0
54
48
14
18
18
1.82
96440509--96440557
19
2.5
19
78
15
55
8
14
0
77
0.98
96441266--96441324
29
2.1
29
87
3
84
33
23
16
25
1.96
96443752--96443816
32
2.0
33
93
3
114
52
6
20
21
1.68
96447793--96447831
20
1.9
20
84
5
51
46
7
15
30
1.74
96450875--96450958
31
2.7
31
88
5
125
33
21
3
41
1.70
96457787--96457816
15
2.0
15
100
0
60
20
33
0
46
1.51
96460673--96460717
22
2.0
22
91
0
72
33
2
15
48
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96478945--96478996
20
2.6
20
81
6
61
53
1
3
40
1.30
96479208--96479311
19
5.6
18
71
20
72
33
3
1
60
1.26
96479218--96479314
9
10.1
9
70
17
63
31
4
2
61
1.26
96481022--96481170
63
2.4
63
82
0
172
27
20
26
25
1.99
96482883--96482907
13
1.9
13
100
0
50
40
8
20
32
1.81
96486151--96486188
18
2.2
18
86
13
53
10
0
2
86
0.66
96486686--96486806
63
1.9
63
81
6
147
27
19
30
22
1.98
96490825--96490849
6
4.2
6
100
0
50
68
0
0
32
0.90
96493797--96493830
17
2.0
17
100
0
68
35
11
11
41
1.78
96494263--96494295
6
5.7
6
96
3
59
87
0
12
0
0.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344