Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  132  of  344  ( 41197 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44591822--44592753
467
2.0
467
97
0
1776
27
11
19
41
1.86
44594507--44594536
10
3.1
10
95
4
53
43
16
10
30
1.81
44595628--44595666
5
7.8
5
85
8
53
74
0
25
0
0.82
44595601--44595675
14
5.6
14
73
16
70
66
0
30
2
1.05
44598077--44598245
46
3.7
45
79
12
182
28
26
20
23
1.99
44598082--44598252
93
1.8
93
91
0
279
28
26
21
23
1.99
44598125--44598268
46
3.1
45
72
18
127
29
27
20
23
1.99
44599551--44599594
19
2.4
19
85
7
56
40
9
0
50
1.34
44602856--44603342
150
3.3
148
84
5
565
27
18
29
24
1.98
44602856--44603292
50
8.8
50
84
4
539
27
18
29
24
1.98
44604043--44604076
17
2.0
17
100
0
68
41
5
23
29
1.78
44606289--44606407
27
4.4
28
80
9
122
39
21
26
12
1.89
44606289--44606415
54
2.3
55
79
5
141
40
20
25
13
1.89
44607960--44608088
56
2.3
55
81
5
136
16
30
25
27
1.97
44608143--44608167
12
2.1
12
100
0
50
8
24
32
36
1.84
44608477--44608525
24
2.0
26
84
8
66
51
26
4
18
1.64
44608991--44609045
27
2.0
27
82
6
67
25
25
0
49
1.51
44610194--44610227
16
2.1
16
94
0
59
35
8
0
55
1.31
44612588--44612677
44
2.0
44
91
0
144
36
8
4
50
1.54
44613115--44613159
17
2.6
17
86
13
58
55
0
2
42
1.12
44615162--44615206
20
2.3
20
96
3
83
44
8
20
26
1.80
44620559--44620587
2
14.5
2
100
0
58
0
0
48
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44621538--44621676
70
2.0
70
97
0
260
50
10
14
25
1.74
44621863--44621960
48
2.0
48
100
0
196
50
10
20
19
1.76
44625935--44626073
69
2.0
69
95
0
251
27
13
31
27
1.94
44635016--44635112
43
2.3
43
87
3
124
43
15
15
25
1.86
44635117--44635242
21
5.9
21
70
17
71
43
12
14
29
1.82
44635055--44635199
65
2.2
65
80
6
161
41
11
18
28
1.86
44635161--44635232
22
3.3
22
77
11
76
44
11
12
31
1.77
44635118--44635251
43
3.1
42
80
6
144
43
12
14
29
1.83
44637346--44637462
2
58.5
2
100
0
234
49
50
0
0
1.00
44640120--44640171
6
8.5
6
89
2
77
69
0
15
15
1.20
44641868--44641923
28
2.0
28
92
0
94
26
19
23
30
1.98
44649287--44649456
40
4.3
40
83
0
198
25
30
21
23
1.99
44655230--44655289
30
2.0
30
100
0
120
16
13
20
50
1.78
44659884--44659927
20
2.2
20
95
0
79
29
6
6
56
1.51
44665941--44666079
40
3.5
40
94
2
235
25
23
28
22
1.99
44665888--44666151
40
6.7
39
82
8
232
25
21
28
25
1.99
44665941--44666184
80
3.1
80
80
5
185
25
21
28
24
1.99
44673907--44674118
40
5.3
39
87
4
255
25
21
28
25
1.99
44681614--44681708
27
3.5
27
80
5
102
42
22
7
28
1.80
44681713--44681827
27
4.3
27
95
2
205
31
25
6
36
1.82
44681715--44681827
53
2.1
54
95
1
201
30
25
6
37
1.81
44681726--44681918
27
7.2
26
83
4
111
35
24
7
31
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44681715--44681856
53
2.6
53
87
4
169
32
24
7
35
1.82
44681715--44681869
80
1.9
80
82
2
195
32
25
7
34
1.83
44681808--44681945
27
5.1
27
79
4
125
39
23
9
27
1.86
44681789--44681945
54
2.9
54
80
2
147
38
22
8
29
1.84
44681930--44682071
27
5.3
27
89
0
203
34
19
20
26
1.96
44681903--44682072
54
3.1
54
81
3
191
35
19
18
26
1.95
44681876--44682072
81
2.4
81
79
5
193
35
19
18
26
1.95
44682415--44682494
31
2.6
31
91
0
124
18
18
15
47
1.83
44682415--44682499
6
13.8
6
76
14
84
18
18
14
48
1.81
44682415--44682499
19
4.6
18
73
16
84
18
18
14
48
1.81
44688432--44688475
20
2.3
20
81
18
58
45
0
4
50
1.22
44688811--44688845
13
2.8
13
91
4
54
74
0
25
0
0.82
44688809--44688842
17
2.0
17
94
0
59
73
0
26
0
0.83
44690817--44690865
22
2.3
22
86
6
66
24
30
30
14
1.94
44692967--44693051
27
3.2
26
81
8
98
15
23
22
38
1.92
44700814--44700925
27
4.1
27
79
12
113
16
23
22
37
1.94
44705208--44705402
55
3.6
53
77
10
189
36
17
23
21
1.94
44705215--44705415
108
1.8
110
86
6
293
35
17
23
22
1.95
44705654--44705684
16
1.9
16
93
0
53
41
0
22
35
1.54
44710125--44710232
27
4.0
27
91
0
162
32
19
21
26
1.97
44710137--44710258
54
2.3
54
81
9
144
35
19
18
27
1.95
44710217--44710284
26
2.6
27
85
4
93
41
19
10
29
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44710268--44710605
27
12.5
26
79
10
261
39
17
10
32
1.83
44710252--44710593
54
6.3
53
79
8
309
38
17
10
32
1.84
44710252--44710593
81
4.2
81
78
7
338
38
17
10
32
1.84
44710849--44710972
41
3.0
41
85
2
142
23
20
27
28
1.99
44711114--44711175
22
2.8
22
78
9
72
17
22
24
35
1.95
44719148--44719316
46
3.7
47
79
10
172
28
20
28
23
1.99
44719148--44719414
46
5.7
49
75
13
169
28
19
28
22
1.98
44723964--44723997
13
2.6
13
95
0
59
41
14
17
26
1.88
44724096--44724127
3
10.7
3
93
0
55
31
3
0
65
1.08
44730229--44730269
15
2.6
16
85
11
50
9
31
0
58
1.31
44733812--44733869
29
2.0
29
100
0
116
41
17
20
20
1.90
44737450--44737570
46
2.6
47
88
2
172
36
11
24
27
1.90
44737549--44737756
54
3.9
54
80
9
226
35
16
24
23
1.95
44737558--44737745
55
3.5
53
82
7
202
35
17
23
22
1.95
44748644--44748689
23
2.0
23
86
4
65
60
2
0
36
1.09
44750236--44750286
3
17.0
3
100
0
102
33
0
0
66
0.92
44758006--44758049
19
2.3
20
84
7
56
27
20
11
40
1.86
44772530--44772709
92
2.0
92
97
0
342
31
25
17
26
1.97
44776225--44776260
10
3.6
10
84
0
54
36
19
25
19
1.95
44776225--44776263
20
2.0
20
94
0
69
38
17
25
17
1.92
44776227--44776270
20
2.2
20
87
0
61
38
18
22
20
1.93
44778651--44778828
76
2.3
78
86
6
263
23
20
26
29
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44778651--44778861
40
5.4
39
84
8
261
24
20
27
28
1.99
44787295--44787337
15
2.9
15
92
0
77
30
25
6
37
1.82
44798419--44798458
22
1.9
22
85
10
57
27
12
20
40
1.88
44800609--44800642
17
2.0
17
94
0
59
55
5
8
29
1.54
44813881--44813908
5
5.6
5
100
0
56
82
0
17
0
0.68
44816557--44816609
2
26.5
2
100
0
106
0
49
0
50
1.00
44820615--44820735
46
2.6
46
85
7
158
33
26
19
21
1.97
44823083--44823162
30
2.7
30
82
7
99
56
15
17
11
1.67
44823083--44823153
15
4.7
15
81
6
90
57
12
18
11
1.64
44823085--44823162
15
5.2
15
78
9
79
56
15
16
11
1.67
44826094--44826222
46
2.8
46
94
2
215
29
27
21
20
1.98
44827518--44827610
29
3.2
29
92
3
161
32
29
12
25
1.93
44843502--44843553
26
2.0
26
100
0
104
19
19
30
30
1.96
44854301--44854623
47
6.8
47
91
2
493
29
30
7
32
1.85
44854301--44854623
96
3.4
96
92
0
524
29
30
7
32
1.85
44854301--44854623
143
2.3
144
90
3
494
29
30
7
32
1.85
44865505--44865720
40
5.4
40
81
6
224
25
22
26
25
2.00
44865505--44865718
80
2.7
80
83
3
252
25
22
26
25
2.00
44865505--44865723
120
1.8
121
82
4
282
25
23
26
24
2.00
44873041--44873263
40
5.6
40
79
4
243
26
23
26
23
2.00
44873041--44873259
120
1.8
121
82
6
284
26
24
25
24
2.00
44891393--44891564
46
3.7
46
71
14
129
31
28
18
21
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44891402--44891663
93
2.8
93
83
2
339
30
26
19
23
1.98
44893759--44893823
6
10.3
6
79
11
51
73
4
4
16
1.17
44893934--44893978
22
2.0
22
83
8
56
11
2
68
17
1.29
44894105--44894134
12
2.4
13
94
5
53
53
0
43
3
1.17
44896566--44896819
40
6.3
40
86
6
207
25
27
22
24
1.99
44896530--44896819
80
3.7
81
80
6
285
25
27
22
24
1.99
44896602--44896819
120
1.8
120
87
2
330
27
27
21
22
1.99
44898204--44898228
13
1.9
13
100
0
50
0
24
0
76
0.80
44904788--44905035
40
6.3
40
86
4
276
27
28
22
22
1.99
44904813--44905035
78
2.8
79
85
4
299
27
28
21
21
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344