genome.fa.s10.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  155  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51610241--51610267	5	5.4	5	100	0	54	81	18	0	0	0.69
51612904--51612959	28	2.0	28	82	0	67	41	7	0	51	1.29
51622753--51622892	27	5.2	28	88	5	175	35	22	24	18	1.96
51624512--51624621	26	4.2	26	95	2	177	36	24	4	34	1.76
51629343--51629382	21	1.9	21	84	0	53	15	25	27	32	1.95
51632895--51633064	40	4.3	40	85	0	207	24	30	21	23	1.99
51644196--51644339	51	2.9	49	81	4	180	28	26	19	25	1.99
51649384--51649529	41	3.6	41	89	3	204	36	26	17	19	1.94
51664666--51664765	27	3.7	27	79	11	107	31	16	15	38	1.89
51665084--51665118	18	1.9	18	88	0	52	22	17	17	42	1.88
51670659--51670721	26	2.4	26	86	0	90	31	14	25	28	1.95
51677102--51677161	28	2.1	28	90	0	93	43	6	15	35	1.72
51682118--51682222	25	4.1	25	67	19	72	33	12	20	34	1.90
51682090--51682226	26	5.3	26	70	17	88	33	11	20	34	1.89
51682118--51682278	78	2.1	78	97	0	304	33	13	19	33	1.91
51683920--51684057	50	2.7	50	93	3	224	38	14	15	31	1.87
51692324--51692475	42	3.6	42	82	3	180	31	25	13	28	1.94
51696822--51696851	13	2.2	14	94	5	53	33	0	43	23	1.54
51701509--51701656	42	3.5	42	84	0	179	31	23	12	31	1.92
51704676--51704713	19	2.0	20	85	15	53	39	23	0	36	1.55
51706177--51706272	26	3.7	26	94	0	174	26	22	22	28	1.99
51707071--51707154	27	3.1	27	89	3	116	21	25	21	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51707278--51707511	27	8.7	26	77	6	173	28	8	20	42	1.81
51707303--51707511	80	2.6	81	80	5	208	28	8	21	41	1.82
51707216--51707552	27	12.4	27	74	10	118	32	8	19	39	1.83
51707493--51707673	81	2.2	81	84	0	245	38	7	20	33	1.81
51707477--51707653	27	6.6	27	87	0	228	41	8	18	32	1.80
51707477--51707653	54	3.3	54	89	0	255	41	8	18	32	1.80
51712518--51712633	29	4.0	29	89	1	171	29	31	13	25	1.94
51731190--51731246	23	2.5	22	83	10	80	57	12	19	10	1.63
51744121--51744969	88	9.7	88	87	0	1110	29	24	19	26	1.98
51744170--51744926	44	17.2	44	62	15	215	29	23	20	26	1.99
51744121--51744948	439	1.9	439	89	2	1286	29	24	19	27	1.98
51745061--51745356	45	6.6	46	72	10	148	28	19	23	28	1.98
51744968--51745356	134	2.9	136	80	5	461	30	18	22	28	1.98
51745194--51745364	89	1.9	90	82	1	218	26	19	24	29	1.98
51744972--51745402	134	3.2	135	78	6	385	30	18	22	28	1.97
51745239--51745401	45	3.7	44	84	4	130	25	19	25	28	1.99
51745934--51745966	14	2.3	15	89	5	50	72	12	15	0	1.12
51746947--51747012	3	22.0	3	100	0	132	33	0	0	66	0.92
51747087--51747162	27	2.8	26	77	21	77	19	5	5	69	1.27
51747150--51747174	13	1.9	13	100	0	50	16	0	0	84	0.63
51752732--51753136	49	8.4	49	93	3	662	33	7	31	28	1.85
51754940--51755216	40	6.9	40	94	0	457	20	22	31	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51755462--51755512	25	2.0	25	81	7	59	33	13	31	21	1.92
51759331--51759408	22	3.3	22	66	22	59	32	10	30	26	1.90
51759263--51759518	96	2.7	95	91	3	410	33	7	31	27	1.84
51759263--51759530	47	5.7	47	89	3	396	34	7	30	27	1.84
51762912--51762974	27	2.3	27	91	0	99	38	12	20	28	1.89
51762912--51763001	27	3.3	26	81	9	83	37	13	20	28	1.90
51777352--51777415	23	2.5	26	78	17	80	39	3	18	39	1.67
51777364--51777417	23	2.3	23	96	0	99	37	3	20	38	1.70
51782863--51782921	31	1.9	31	85	0	82	47	18	5	28	1.70
51786560--51786779	45	5.0	45	86	4	279	26	27	22	23	1.99
51791092--51791230	27	5.2	26	83	7	154	37	21	23	17	1.94
51791647--51791676	8	3.8	8	90	0	51	3	23	23	50	1.64
51792415--51792445	16	1.9	16	93	0	53	61	3	29	6	1.37
51799211--51799378	46	3.6	46	78	10	171	23	22	26	27	1.99
51799208--51799380	93	1.9	93	90	0	274	23	21	27	27	1.99
51802315--51802370	15	3.7	15	85	7	78	12	17	10	58	1.61
51804769--51804944	46	3.8	46	78	10	196	22	21	27	28	1.99
51804766--51804937	93	1.8	93	92	0	290	22	21	27	27	1.99
51806898--51807008	27	4.2	26	80	12	118	35	21	25	18	1.95
51806901--51807006	53	2.0	53	83	7	135	34	20	25	18	1.96
51809296--51809414	41	2.8	43	79	3	143	26	14	22	36	1.93
51809999--51810061	32	2.0	32	96	0	117	36	6	17	39	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51812928--51813110	40	4.6	40	85	5	219	24	19	27	27	1.99
51812978--51813143	80	2.1	79	83	5	201	25	18	27	28	1.98
51815143--51815167	13	1.9	13	100	0	50	32	4	24	40	1.73
51816914--51816999	27	3.2	26	85	4	109	36	22	23	18	1.95
51825223--51825322	45	2.2	45	90	0	164	38	28	10	24	1.87
51826310--51826340	16	1.9	16	100	0	62	38	16	19	25	1.92
51844005--51844581	47	12.1	47	91	3	895	32	8	29	28	1.87
51844700--51844778	37	2.1	37	88	4	115	25	18	30	25	1.98
51848648--51848754	47	2.3	47	85	0	142	28	30	9	31	1.88
51861611--51861828	40	5.5	40	89	4	300	20	23	28	27	1.99
51861611--51861836	120	1.9	119	87	0	335	20	23	28	27	1.99
51866526--51866558	16	2.0	17	88	5	50	0	21	21	57	1.41
51867927--51867987	27	2.3	27	91	0	95	36	16	19	27	1.93
51879956--51880238	48	5.8	48	92	3	476	36	6	25	31	1.82
51879958--51880238	98	2.9	98	94	1	494	36	6	25	30	1.82
51881613--51881795	40	4.6	40	79	10	196	25	27	21	25	1.99
51881613--51881797	79	2.3	82	82	7	220	26	27	21	24	1.99
51889781--51889965	79	2.3	82	84	7	238	25	27	22	24	2.00
51889762--51889965	40	5.1	40	82	8	238	25	27	22	25	2.00
51891766--51892210	48	9.4	48	92	1	709	37	6	24	31	1.81
51891766--51892210	188	2.3	190	93	2	750	37	6	24	31	1.81
51893599--51893693	40	2.4	40	98	0	181	25	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51893750--51893831	29	2.9	28	78	3	92	24	17	28	30	1.97
51893723--51893852	57	2.3	57	81	6	149	23	19	28	28	1.98
51893753--51893842	28	3.2	27	73	7	81	23	18	28	28	1.98
51897263--51897742	48	10.0	48	93	1	761	37	6	25	30	1.82
51897265--51897742	236	2.0	238	93	2	809	37	6	25	30	1.82
51900985--51901090	56	1.9	56	96	0	194	46	7	21	24	1.77
51901062--51901120	30	2.0	30	96	0	109	44	5	20	30	1.73
51901006--51901176	86	2.0	86	96	0	315	45	8	21	25	1.79
51902318--51902542	40	5.7	40	86	5	296	24	22	28	25	2.00
51917348--51917523	56	3.1	56	96	0	325	44	9	22	22	1.82
51918690--51918907	80	2.7	78	83	6	244	27	21	26	25	1.99
51918653--51918875	40	5.6	40	84	5	274	25	22	27	25	2.00
51921729--51921780	26	2.0	26	84	0	68	40	21	19	19	1.92
51921784--51921980	27	7.3	27	90	0	250	25	20	17	36	1.95
51924235--51924320	24	3.5	24	76	3	82	26	18	26	27	1.98
51927491--51927560	27	2.6	26	93	2	86	31	27	12	28	1.93
51927491--51927588	28	3.5	28	88	2	126	31	27	13	27	1.94
51939360--51939487	29	4.5	28	88	2	175	32	25	12	28	1.92
51939359--51939487	57	2.3	57	87	2	188	32	26	12	28	1.92
51944127--51944180	27	2.0	26	85	3	72	38	18	20	22	1.93
51944184--51944351	27	6.2	27	82	2	203	25	22	17	34	1.96
51944184--51944351	54	3.1	53	87	3	237	25	22	17	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51944199--51944351	81	1.9	81	87	0	225	24	20	19	35	1.96
51948517--51948592	39	1.9	39	94	0	134	27	32	23	15	1.95
51958170--51958499	47	6.9	47	91	2	507	31	8	30	29	1.87
51958253--51958328	22	3.3	22	64	10	62	30	11	30	27	1.92
51958170--51958499	96	3.5	94	90	2	507	31	8	30	29	1.87
51958170--51958499	143	2.3	143	92	1	538	31	8	30	29	1.87
51958618--51958696	37	2.1	37	88	4	115	25	18	30	25	1.98
51960752--51960810	10	5.9	10	84	7	66	23	8	1	66	1.29
51964569--51964608	15	2.5	16	92	8	64	25	2	0	72	0.97
51965412--51965591	100	1.8	100	86	2	263	32	16	23	28	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344