genome.fa.s10.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  143  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47707068--47707093	11	2.4	11	100	0	52	38	19	7	34	1.80
47724115--47724169	28	1.9	29	81	3	67	45	1	20	32	1.61
47725659--47725724	29	2.3	29	91	0	105	30	12	28	28	1.93
47733778--47733942	68	2.4	68	79	10	174	22	27	15	33	1.95
47738785--47738897	29	4.0	28	78	6	111	29	30	15	24	1.95
47740380--47740412	16	2.1	16	94	0	57	18	3	27	51	1.60
47746122--47746236	29	4.0	29	77	6	110	28	29	14	26	1.95
47748950--47749069	45	2.7	45	80	0	141	34	25	14	26	1.94
47752425--47752485	30	2.0	30	83	0	77	31	22	8	37	1.84
47755431--47755503	15	4.9	15	86	0	101	56	16	15	12	1.68
47757313--47757476	76	2.2	76	90	0	265	28	29	18	24	1.98
47759392--47759482	45	2.0	45	91	0	146	36	29	9	24	1.88
47759696--47759734	14	2.6	16	88	8	55	38	20	2	38	1.66
47761706--47761841	42	3.2	42	82	11	152	26	17	24	31	1.97
47761692--47761841	43	3.5	43	77	15	157	26	16	24	33	1.95
47764142--47764267	46	2.7	46	92	0	207	20	18	27	33	1.96
47764492--47764529	19	2.0	20	85	15	53	36	0	23	39	1.55
47766136--47766167	16	2.0	16	93	0	55	18	9	37	34	1.83
47767209--47767310	37	2.8	37	93	0	168	26	29	18	25	1.98
47767429--47767930	47	10.6	47	91	2	799	28	29	8	33	1.87
47767429--47767930	189	2.6	188	91	3	817	28	29	8	33	1.87
47773157--47773338	28	6.5	28	97	0	330	33	29	12	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47775465--47775710	40	6.2	40	91	1	359	27	27	20	25	1.99
47776998--47777105	37	2.9	37	87	0	144	27	27	18	25	1.98
47777223--47777766	47	11.6	47	90	5	879	29	28	7	34	1.85
47777355--47777766	96	4.3	94	94	1	707	29	28	8	33	1.86
47777355--47777766	143	2.9	143	96	1	756	29	28	8	33	1.86
47781773--47781981	40	5.2	40	88	2	276	27	27	20	25	1.99
47781749--47781990	80	3.0	79	83	4	288	28	27	19	24	1.99
47783267--47783368	37	2.8	37	93	0	168	26	29	18	25	1.98
47783487--47783985	47	10.6	47	89	3	754	29	28	8	33	1.87
47800729--47800828	44	2.4	40	85	11	123	25	21	23	31	1.98
47800723--47800817	44	2.1	44	94	1	163	26	18	21	33	1.96
47802333--47802391	21	2.8	21	89	0	82	23	15	33	27	1.95
47802646--47802702	25	2.2	26	78	12	73	12	7	19	61	1.53
47814301--47814339	17	2.3	17	95	0	69	23	5	12	58	1.54
47816463--47816575	42	2.7	42	95	0	208	31	23	20	24	1.98
47817418--47817479	28	2.2	28	97	0	115	22	25	16	35	1.94
47825209--47825247	20	2.0	20	89	0	60	15	5	2	76	1.06
47848949--47849101	42	3.7	39	88	6	182	30	23	22	23	1.99
47848973--47849101	42	3.1	42	96	0	231	31	22	20	24	1.98
47851363--47851410	24	2.0	24	84	8	62	6	43	0	50	1.27
47851799--47851830	3	10.7	3	93	0	55	37	0	28	34	1.57
47851936--47851988	15	3.5	15	70	14	54	41	15	0	43	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47851927--47851989	31	2.0	31	100	0	126	41	15	0	42	1.47
47854933--47855072	39	3.5	39	89	4	185	19	22	27	30	1.98
47854933--47855089	39	4.0	39	87	4	160	18	21	28	31	1.97
47859881--47859921	19	2.1	20	86	4	57	56	0	9	34	1.32
47862677--47862818	40	3.6	40	90	2	216	23	23	27	25	2.00
47871853--47871889	15	2.5	15	100	0	74	40	13	8	37	1.74
47877563--47877661	40	2.3	44	84	8	134	28	20	24	27	1.99
47879186--47879254	30	2.3	31	82	7	79	47	17	8	26	1.76
47879289--47879329	21	2.0	21	95	0	73	24	17	29	29	1.97
47882582--47882633	26	2.0	26	100	0	104	34	11	23	30	1.90
47888870--47889054	40	4.7	40	84	5	241	24	28	22	24	2.00
47888872--47889054	79	2.3	80	84	5	237	24	27	22	24	2.00
47890183--47890302	56	2.1	56	98	0	231	22	23	9	45	1.81
47891012--47891271	76	3.4	79	80	6	291	36	15	15	33	1.88
47891012--47891271	80	3.4	79	79	6	264	36	15	15	33	1.88
47891619--47891657	17	2.4	17	95	4	71	53	20	15	10	1.70
47892837--47893005	85	2.0	85	94	0	293	33	10	13	43	1.78
47894378--47894416	17	2.3	17	86	8	53	64	2	10	23	1.37
47896557--47896680	46	2.8	46	91	3	200	27	22	16	33	1.96
47896557--47896754	37	4.8	45	84	10	207	26	21	16	35	1.94
47896643--47896781	37	3.8	37	95	0	233	25	21	13	38	1.90
47898807--47898874	18	3.7	19	80	5	77	47	14	7	30	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47900147--47900185	16	2.4	16	91	0	60	0	30	0	69	0.89
47903028--47903340	47	6.7	46	71	12	192	26	20	29	23	1.99
47904221--47904283	33	1.9	33	96	0	117	22	25	38	14	1.92
47906922--47906972	19	2.6	20	78	12	61	41	1	0	56	1.10
47908485--47908532	15	3.3	15	73	5	53	29	0	27	43	1.55
47908479--47908522	14	3.1	14	74	6	52	27	0	34	38	1.57
47908479--47908538	29	2.1	29	93	0	102	28	0	30	41	1.56
47908988--47909037	21	2.4	21	83	16	68	78	10	4	8	1.09
47909016--47909060	14	3.4	14	81	9	58	68	8	6	15	1.36
47910090--47910145	30	1.9	28	85	7	76	53	3	30	12	1.55
47912716--47912760	14	3.3	14	84	6	65	37	0	13	48	1.42
47915529--47915649	3	41.0	3	68	15	56	23	7	2	66	1.30
47915546--47915596	20	2.5	20	80	3	57	25	3	1	68	1.17
47915673--47915723	21	2.3	23	90	10	79	31	1	0	66	1.03
47915682--47915720	10	3.8	10	93	6	69	30	0	0	69	0.89
47915682--47915734	10	5.1	11	78	19	60	33	0	0	66	0.92
47915814--47915907	3	31.3	3	78	4	73	26	4	3	65	1.26
47922793--47922831	20	1.9	21	84	5	53	35	15	25	23	1.94
47926755--47926805	25	2.0	24	82	14	59	27	5	7	58	1.49
47929959--47930017	25	2.4	25	97	0	109	40	23	6	28	1.80
47930230--47930271	19	2.3	19	87	4	59	19	9	2	69	1.28
47932346--47932407	27	2.3	27	82	0	79	30	19	32	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47933628--47933721	47	2.0	46	89	2	143	32	11	20	35	1.89
47933842--47933936	17	5.6	18	70	22	64	51	3	3	42	1.33
47939640--47940092	47	9.6	47	91	1	717	29	29	8	33	1.86
47939640--47940092	96	4.8	94	91	2	717	29	29	8	33	1.86
47939640--47940092	143	3.2	143	95	0	784	29	29	8	33	1.86
47942030--47942149	56	2.1	56	98	0	231	22	23	9	45	1.81
47945975--47946012	19	2.0	20	85	15	53	39	23	0	36	1.55
47946242--47946412	93	1.8	93	89	0	270	29	28	20	21	1.98
47946237--47946415	46	3.9	46	72	10	166	29	27	20	22	1.99
47949426--47949453	14	2.0	14	100	0	56	35	0	14	50	1.43
47952328--47952421	39	2.5	35	80	14	91	52	2	3	42	1.29
47952804--47952833	9	3.3	9	90	0	51	40	0	3	56	1.16
47967087--47967274	94	2.0	94	95	0	340	28	20	14	36	1.92
47969782--47969821	21	2.0	20	85	14	55	22	25	35	17	1.95
47974105--47974144	20	2.0	20	85	0	53	15	22	15	47	1.82
47974180--47974252	26	2.9	26	95	4	132	27	13	19	39	1.89
47985967--47986225	120	2.2	120	81	7	287	26	20	26	26	1.99
47985967--47986192	40	5.7	40	88	4	289	25	21	26	26	1.99
47993972--47994230	120	2.2	120	82	7	296	26	21	26	25	1.99
47993972--47994197	40	5.7	40	90	4	298	25	21	26	26	2.00
48009794--48009937	40	3.6	40	90	6	213	26	26	22	25	2.00
48015795--48016022	46	5.0	46	92	1	332	38	14	24	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48017164--48017227	23	2.8	23	87	0	92	39	18	20	21	1.93
48020955--48020993	16	2.4	17	95	4	71	48	33	5	12	1.63
48021584--48021611	14	2.0	14	100	0	56	28	21	21	28	1.99
48022834--48022940	28	3.8	28	92	0	160	30	25	10	33	1.89
48025497--48025608	29	3.9	29	87	2	156	28	12	28	30	1.93
48025505--48025620	57	2.0	57	88	3	171	27	13	30	28	1.94
48032770--48032945	46	3.8	46	76	12	198	20	21	29	28	1.98
48032767--48032938	93	1.8	93	94	0	308	20	21	29	27	1.98
48039729--48039901	46	3.7	46	77	13	201	20	20	30	29	1.97
48039723--48039894	93	1.8	93	93	0	299	20	20	29	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344