Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  135  of  344  ( 41197 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45429277--45429471
27
7.3
27
86
1
221
26
19
17
35
1.94
45429476--45429725
27
9.3
27
81
10
271
41
10
21
26
1.85
45429476--45429722
81
3.0
80
87
5
338
41
10
20
27
1.85
45434823--45434867
16
2.9
15
77
6
54
71
0
11
17
1.14
45435506--45435552
20
2.2
20
85
7
58
72
4
4
19
1.18
45436800--45436852
16
3.3
15
74
10
52
33
7
24
33
1.84
45438575--45438746
93
1.8
93
94
0
308
27
29
22
20
1.98
45438568--45438743
46
3.8
46
79
12
207
28
29
21
20
1.98
45445678--45445852
46
3.8
46
76
13
196
29
29
20
21
1.98
45445685--45445856
93
1.8
93
93
0
299
28
29
20
21
1.98
45448988--45449313
174
1.9
174
95
0
589
30
25
14
29
1.95
45449266--45449344
29
2.7
30
82
13
110
30
30
13
25
1.94
45449327--45449429
43
2.4
43
100
0
206
24
34
16
24
1.95
45451488--45451529
16
2.7
15
85
14
50
35
16
11
35
1.86
45451694--45452395
349
2.0
349
100
0
1404
30
4
23
41
1.74
45463656--45463866
46
4.5
46
78
8
178
28
17
28
25
1.97
45463795--45463915
47
2.6
47
86
10
153
30
15
28
24
1.96
45463656--45463917
140
1.9
140
81
9
320
29
17
28
24
1.97
45471278--45471444
46
3.6
47
75
8
155
31
18
27
22
1.97
45471277--45471448
92
1.9
92
87
2
256
30
18
27
23
1.98
45471280--45471479
47
4.3
46
75
10
167
30
18
27
24
1.98
45474709--45474793
38
2.2
38
97
0
161
20
11
34
34
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45478705--45478751
20
2.2
20
85
7
58
72
4
4
19
1.18
45480199--45480244
5
9.2
5
100
0
92
39
0
0
60
0.97
45480824--45480875
21
2.5
21
79
14
63
38
1
17
42
1.60
45481895--45481940
14
3.1
15
81
9
58
50
4
15
30
1.63
45481895--45481963
30
2.3
30
80
7
79
46
4
17
31
1.68
45484650--45484697
25
1.9
25
87
8
71
47
27
4
20
1.68
45494177--45494348
29
6.0
28
81
7
202
19
27
15
37
1.92
45494189--45494373
87
2.1
87
93
2
318
20
28
14
36
1.91
45494334--45494404
29
2.4
29
90
0
106
21
26
11
40
1.87
45497803--45497868
25
2.5
26
87
4
89
30
21
25
22
1.99
45497824--45497874
25
2.0
25
88
0
75
33
21
27
17
1.96
45505659--45505729
15
4.7
15
76
0
61
14
14
15
56
1.68
45505690--45505738
15
3.3
15
79
0
53
10
18
18
53
1.72
45507523--45507612
42
2.1
42
97
0
171
51
23
6
18
1.70
45507883--45507925
21
2.0
21
100
0
86
34
4
4
55
1.41
45508644--45508674
16
1.9
16
93
0
53
35
22
0
41
1.54
45508641--45508680
20
2.0
20
85
0
53
37
22
0
40
1.54
45508866--45509119
55
4.8
54
79
8
240
21
24
17
37
1.94
45508866--45509070
53
3.9
51
79
8
184
20
24
18
36
1.95
45508913--45509112
108
1.8
109
87
5
298
22
24
18
36
1.95
45512446--45512497
26
2.0
26
88
0
77
44
13
9
32
1.76
45513962--45514029
35
1.9
35
90
0
109
29
23
19
27
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45521709--45521878
48
3.6
48
80
6
193
28
20
27
24
1.99
45521889--45522013
49
2.5
49
84
1
160
24
21
29
24
1.99
45551786--45551961
46
3.8
46
79
12
200
21
21
28
29
1.98
45551782--45551953
93
1.8
93
91
4
285
20
21
29
28
1.98
45556594--45556647
27
2.0
27
88
0
81
38
5
14
40
1.70
45556896--45557139
49
4.9
50
82
4
296
27
18
25
28
1.98
45566205--45566292
30
2.9
30
75
0
104
27
28
17
27
1.97
45584235--45584334
29
3.5
29
87
4
132
28
31
16
25
1.96
45584224--45584334
58
1.9
57
87
1
159
27
30
15
26
1.96
45584557--45584599
16
2.7
16
81
0
59
9
18
20
51
1.74
45592876--45592961
43
2.0
43
95
0
154
27
32
17
22
1.96
45594197--45594221
9
2.8
9
100
0
50
0
8
0
92
0.40
45595346--45595414
20
3.5
20
78
9
70
37
1
8
52
1.42
45599766--45599809
22
2.0
22
95
0
79
43
9
6
40
1.63
45614171--45614238
31
2.2
31
86
5
93
27
14
11
45
1.80
45614758--45614792
16
2.2
16
94
0
61
42
0
2
54
1.15
45617308--45617528
40
5.6
40
90
1
320
25
22
25
26
2.00
45619290--45619516
40
5.7
40
94
0
400
22
27
19
29
1.98
45629940--45630206
40
6.7
40
95
0
464
22
27
20
30
1.98
45632447--45632720
40
6.9
40
88
1
408
22
20
29
27
1.98
45636418--45636573
47
3.3
47
83
4
201
33
9
29
27
1.89
45636643--45636728
40
2.2
40
87
2
120
18
20
31
29
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45644125--45644182
28
2.1
28
96
0
107
22
27
20
29
1.99
45644269--45644388
63
1.9
63
87
3
179
32
32
7
27
1.85
45649621--45649648
5
5.6
5
100
0
56
82
0
0
17
0.68
45650732--45651039
130
2.4
129
83
3
388
38
19
14
27
1.91
45653184--45653218
10
3.4
10
88
4
52
85
0
14
0
0.59
45659666--45659842
64
2.8
64
85
3
239
34
9
20
35
1.85
45672635--45672667
6
5.5
6
92
0
57
48
0
48
3
1.17
45676325--45676360
17
2.2
16
90
5
54
44
11
0
44
1.39
45678323--45678381
30
1.9
30
86
3
82
47
3
20
28
1.66
45678619--45678663
11
3.9
11
80
11
54
35
0
2
62
1.08
45678724--45678754
3
10.7
3
93
6
55
67
0
32
0
0.91
45680514--45680817
46
6.6
46
87
1
387
43
13
23
19
1.87
45680524--45680832
137
2.2
138
87
1
442
43
14
22
19
1.88
45683634--45683709
37
2.1
37
92
0
125
14
42
6
36
1.72
45686604--45686650
23
2.0
23
84
8
60
78
8
6
6
1.08
45693679--45693708
6
5.0
6
91
0
51
83
3
13
0
0.77
45694620--45694659
19
2.1
19
86
9
55
2
12
2
82
0.87
45694630--45694670
6
6.3
6
86
13
55
4
14
0
80
0.87
45704354--45704393
19
2.2
19
86
4
55
47
5
25
22
1.71
45709507--45709532
10
2.6
10
100
0
52
92
0
7
0
0.39
45711184--45711303
51
2.4
51
91
0
186
36
13
23
26
1.92
45713421--45713474
23
2.4
22
78
15
56
48
3
0
48
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45719270--45719441
93
1.8
93
87
2
256
28
28
19
23
1.98
45719262--45719431
46
3.7
45
74
10
173
30
28
19
22
1.98
45721904--45721933
7
4.3
7
91
0
51
16
13
40
30
1.87
45723430--45723466
18
2.1
19
85
10
51
10
27
43
18
1.83
45728601--45728659
21
3.0
20
79
16
70
54
1
0
44
1.10
45728591--45728671
19
4.0
19
76
20
67
51
1
2
44
1.22
45729913--45730046
54
2.5
54
77
9
148
25
29
20
25
1.99
45733331--45733367
15
2.5
15
90
0
56
59
0
0
40
0.97
45733839--45733892
28
1.9
28
85
7
74
29
5
12
51
1.63
45735304--45735401
49
2.0
49
82
6
117
55
2
6
36
1.37
45742060--45742102
19
2.3
19
92
4
70
30
2
11
55
1.48
45753866--45753929
24
2.7
23
71
9
58
18
6
3
71
1.20
45754177--45754223
22
2.1
22
84
7
60
36
17
6
40
1.75
45760117--45760150
13
2.6
13
100
0
68
50
5
0
44
1.26
45761056--45761136
40
2.0
40
100
0
162
34
4
19
40
1.73
45765854--45765892
16
2.4
16
87
8
53
38
2
0
58
1.12
45765848--45765884
19
1.9
19
88
0
56
43
0
0
56
0.99
45769103--45769314
48
4.5
48
81
9
240
27
26
20
25
1.99
45775894--45776259
46
7.7
48
74
10
240
23
30
18
27
1.98
45775891--45776259
140
2.6
141
81
6
379
24
30
18
27
1.98
45793052--45793233
50
3.7
49
79
7
167
24
29
20
26
1.99
45793101--45793272
50
3.6
49
80
11
164
25
29
19
26
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45801402--45801464
22
2.8
22
87
4
90
28
1
23
46
1.62
45804116--45804185
34
2.1
34
97
0
131
42
4
8
44
1.54
45804972--45805067
47
2.0
47
95
0
174
38
5
23
32
1.77
45810489--45810575
34
2.5
35
80
10
90
31
5
16
47
1.70
45812193--45812244
18
2.8
18
86
11
70
25
25
0
50
1.50
45814722--45814764
22
2.0
22
86
9
61
0
20
2
76
0.89
45815348--45815384
19
1.9
19
88
0
56
37
13
0
48
1.43
45815846--45816473
3
210.7
3
89
1
913
33
5
0
61
1.19
45820482--45820515
10
3.3
11
84
16
54
50
0
0
50
1.00
45820756--45820782
13
2.1
13
100
0
54
14
7
0
77
0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344