genome.fa.s10.2.7.7.80.10.50.1000.275.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  275  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92208816--92208861	23	2.0	23	100	0	92	34	30	8	26	1.86
92213719--92213776	30	1.9	30	96	0	107	32	17	15	34	1.91
92215088--92215129	15	2.7	16	85	3	59	54	4	0	40	1.21
92215925--92215983	12	4.8	12	72	4	55	74	15	5	5	1.17
92215922--92216007	24	3.9	23	71	23	69	74	16	4	4	1.16
92221860--92221904	21	2.1	21	83	0	54	35	22	4	37	1.74
92222967--92223020	15	3.5	15	79	2	63	44	24	11	20	1.83
92225987--92226094	26	4.2	26	93	0	189	32	7	24	36	1.83
92231064--92231117	23	2.3	23	81	15	67	44	24	11	20	1.83
92232784--92232823	19	2.2	17	86	8	53	35	2	0	62	1.09
92237217--92237275	29	2.0	31	86	6	86	35	5	0	59	1.20
92237352--92237414	30	2.1	30	82	8	76	50	3	11	34	1.54
92238067--92238129	29	2.1	30	82	5	74	55	1	3	39	1.25
92246980--92247031	21	2.5	21	74	0	59	30	26	28	13	1.94
92247238--92247317	28	2.8	29	86	3	117	47	32	3	16	1.64
92256354--92256446	40	2.4	37	80	8	98	32	30	21	16	1.95
92257608--92257643	3	12.0	3	100	0	72	66	0	0	33	0.92
92267525--92267618	39	2.4	41	82	12	124	28	14	28	27	1.96
92269016--92269040	12	2.1	12	100	0	50	60	0	24	16	1.36
92269169--92269239	25	2.8	26	77	12	83	36	9	19	33	1.85
92272574--92272618	22	2.0	22	82	0	54	33	11	8	46	1.70
92272752--92272785	6	5.7	6	89	0	50	47	11	20	20	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92273721--92273753	3	11.0	3	93	0	57	63	0	3	33	1.10
92292592--92292718	45	2.8	44	76	8	130	24	21	10	44	1.83
92295351--92295401	25	2.1	24	82	10	59	13	3	27	54	1.56
92295569--92295603	11	3.3	11	88	8	54	77	0	0	22	0.78
92297232--92297381	38	3.9	38	94	0	246	10	20	30	38	1.86
92298327--92298374	22	2.1	23	84	3	62	35	8	16	39	1.79
92298454--92298520	21	3.2	20	74	15	55	62	2	26	7	1.36
92301981--92302020	12	3.3	12	89	0	53	22	7	7	62	1.47
92302652--92302717	25	2.7	23	77	13	69	16	3	25	54	1.56
92303021--92303053	15	2.3	15	89	5	50	12	0	24	63	1.28
92303263--92303782	128	4.1	126	85	2	679	36	15	17	29	1.91
92303264--92303780	249	2.1	252	86	1	725	36	15	17	29	1.92
92306807--92306927	54	2.2	54	84	7	147	47	8	1	42	1.43
92306824--92307108	139	2.0	141	90	1	448	51	6	3	37	1.46
92312414--92312590	94	1.9	95	90	1	284	14	14	15	56	1.68
92316220--92316248	14	2.0	15	93	6	51	48	24	6	20	1.74
92319649--92319684	17	2.1	17	100	0	72	13	11	16	58	1.63
92325607--92325682	25	3.0	25	77	7	75	2	25	1	71	1.07
92334952--92335125	44	4.0	44	87	2	251	25	28	21	23	1.99
92334952--92335125	89	2.0	87	87	2	249	25	28	21	23	1.99
92338193--92338234	21	2.0	21	100	0	84	19	19	19	42	1.89
92338799--92338851	27	2.0	27	96	0	97	37	20	7	33	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92340078--92340104	7	3.9	7	100	0	54	11	0	0	88	0.50
92347697--92347742	24	1.9	24	95	0	83	41	15	21	21	1.90
92347854--92347913	26	2.3	26	82	0	75	38	21	21	18	1.94
92349413--92349453	16	2.5	17	88	4	57	24	31	24	19	1.98
92352252--92352299	15	3.1	15	76	5	51	58	4	0	37	1.18
92352248--92352299	16	3.2	17	76	10	56	57	3	0	38	1.17
92354089--92354121	16	2.1	16	88	11	50	45	3	6	45	1.43
92354459--92354509	22	2.3	22	83	6	59	23	33	0	43	1.54
92354477--92354538	22	2.8	22	80	2	70	22	33	0	43	1.54
92382896--92383138	54	4.5	54	96	0	432	28	25	20	25	1.99
92386534--92386580	10	4.7	10	83	0	58	21	27	17	34	1.95
92386535--92386581	20	2.3	20	88	0	76	23	25	17	34	1.96
92400359--92400386	13	2.2	13	100	0	56	14	39	28	17	1.89
92402377--92402511	54	2.5	54	88	0	198	29	25	17	27	1.98
92407560--92407601	12	3.7	12	78	12	52	66	0	0	33	0.92
92407559--92407616	22	2.5	22	80	5	62	67	0	0	32	0.91
92409600--92409662	20	3.2	20	93	0	99	50	12	11	25	1.73
92410572--92410730	76	2.1	76	85	9	209	34	0	10	54	1.39
92411677--92411760	36	2.3	36	85	4	105	22	13	22	41	1.88
92412042--92412073	7	4.6	7	100	0	64	25	28	0	46	1.53
92413325--92413431	40	2.7	40	91	0	169	46	22	8	22	1.78
92415005--92415050	15	3.1	15	83	0	56	36	30	6	26	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92415555--92415624	6	11.7	6	83	6	52	51	18	7	22	1.70
92415659--92415701	18	2.4	18	88	0	59	62	9	4	23	1.44
92415669--92415706	12	3.2	12	88	0	58	71	10	2	15	1.25
92415673--92415706	6	5.7	6	86	13	52	70	11	2	14	1.27
92415674--92415731	12	4.8	12	80	0	62	63	13	5	17	1.47
92415673--92415731	18	3.3	18	79	9	66	64	13	5	16	1.45
92423536--92423629	23	4.1	23	85	0	134	22	25	4	47	1.69
92428043--92428136	23	4.1	23	80	0	116	23	26	4	45	1.71
92438909--92438957	3	16.3	3	100	0	98	65	0	0	34	0.93
92440108--92440163	27	2.1	27	100	0	112	25	14	25	35	1.93
92443700--92443736	14	2.6	15	83	12	51	40	0	2	56	1.13
92446767--92446801	3	11.7	3	93	0	61	37	0	0	62	0.95
92450566--92450604	19	2.1	19	100	0	78	35	0	20	43	1.52
92456888--92456965	33	2.4	32	79	10	86	38	15	19	26	1.91
92456863--92457081	101	2.2	101	87	0	303	32	14	24	28	1.94
92457347--92457379	17	2.0	17	88	5	50	48	0	18	33	1.48
92461673--92461719	17	2.8	17	80	6	51	44	0	6	48	1.28
92462051--92462086	13	2.8	14	84	16	51	55	0	0	44	0.99
92464514--92464542	14	2.0	15	93	6	51	27	0	20	51	1.47
92465710--92465840	56	2.3	56	92	0	217	28	12	25	33	1.93
92465710--92465871	56	2.9	56	87	3	175	26	13	26	33	1.94
92470212--92470274	19	3.4	19	82	8	94	34	22	0	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92470206--92470274	18	3.8	19	81	9	90	36	20	0	43	1.52
92470206--92470275	36	1.9	36	100	0	140	37	20	0	42	1.52
92471200--92471295	36	2.6	37	85	9	124	36	6	11	45	1.65
92478955--92479131	50	3.5	50	88	2	257	35	16	21	26	1.94
92479109--92479310	31	6.5	31	88	0	287	28	17	26	27	1.97
92479341--92479466	47	2.7	48	85	2	157	29	15	25	30	1.95
92483330--92483354	13	1.9	13	100	0	50	4	48	24	24	1.68
92488909--92488946	3	13.0	3	88	5	60	34	2	0	63	1.09
92489433--92489509	28	2.8	28	68	14	70	42	0	22	35	1.54
92496089--92496222	39	3.4	38	80	8	128	32	8	12	46	1.72
92496095--92496253	39	4.1	38	80	8	119	32	9	11	46	1.73
92499787--92499829	22	1.9	23	90	4	70	27	0	11	60	1.31
92508762--92509037	55	4.9	55	82	7	322	50	15	9	25	1.73
92526614--92526645	12	2.6	13	90	9	50	50	25	6	18	1.70
92528466--92528591	66	1.9	66	80	3	146	49	18	17	15	1.80
92536078--92536126	20	2.5	19	80	12	55	63	2	0	34	1.06
92537513--92537542	8	3.8	8	90	0	51	16	33	0	50	1.46
92558279--92558306	3	9.3	3	100	0	56	0	35	32	32	1.58
92563414--92563449	8	4.6	8	86	6	56	52	11	0	36	1.37
92563546--92563585	22	1.9	20	85	10	53	40	2	0	57	1.12
92563568--92563620	23	2.2	26	86	10	76	39	0	1	58	1.09
92563567--92563619	25	2.2	22	81	15	61	41	0	1	56	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92568633--92568703	36	2.0	36	97	0	133	50	16	12	19	1.77
92571956--92571980	5	5.0	5	100	0	50	20	0	0	80	0.72
92585724--92585770	25	2.0	25	83	8	62	27	14	4	53	1.60
92586031--92586342	46	7.0	46	86	6	408	21	24	15	38	1.92
92588458--92588534	27	2.8	28	74	16	72	55	3	1	38	1.26
92591621--92591676	28	2.0	28	82	0	67	28	8	3	58	1.45
92591712--92591794	30	2.9	28	78	15	82	33	6	0	60	1.21
92592112--92592152	21	2.0	21	90	0	64	21	2	2	73	1.07
92593987--92594020	17	1.9	18	88	5	52	38	2	0	58	1.13
92603105--92603367	46	5.7	46	90	0	366	38	14	24	22	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344