genome.fa.s10.2.7.7.80.10.50.1000.194.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  194  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64788892--64788945	27	2.0	27	85	0	72	38	14	7	38	1.75
64793854--64793886	17	1.9	17	93	0	57	36	3	27	33	1.72
64794591--64794642	21	2.5	21	87	6	70	21	38	5	34	1.77
64794602--64794645	21	2.1	21	95	0	79	18	40	4	36	1.71
64797989--64798178	96	2.0	96	91	0	308	11	33	16	38	1.85
64800303--64800328	12	2.2	12	100	0	52	50	7	0	42	1.31
64801617--64801653	19	1.9	19	88	0	56	59	2	10	27	1.44
64801736--64801794	27	2.2	27	81	6	66	45	0	10	44	1.37
64803415--64803444	6	5.0	6	100	0	60	16	16	16	50	1.79
64820787--64820824	17	2.2	17	86	9	51	52	0	0	47	1.00
64820829--64820893	29	2.3	27	82	10	69	64	1	6	27	1.26
64821914--64821973	28	2.1	28	87	6	86	48	0	16	35	1.47
64821946--64822075	34	3.8	33	83	8	163	39	0	16	44	1.47
64822170--64822554	125	3.1	126	82	3	472	38	17	15	28	1.90
64824537--64824642	27	4.0	27	88	1	151	22	36	2	37	1.69
64824619--64824827	93	2.3	93	86	2	278	23	29	11	35	1.90
64829115--64829391	41	6.8	40	83	5	254	37	23	19	19	1.94
64829115--64829360	81	3.0	81	84	2	303	38	23	19	18	1.94
64830412--64830485	8	8.9	8	73	16	53	62	4	0	33	1.14
64830438--64830471	7	4.7	7	88	3	50	70	0	0	29	0.87
64830438--64830482	22	2.0	22	91	4	72	64	2	0	33	1.06
64833482--64833533	23	2.3	22	75	21	54	9	23	1	65	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64833527--64833565	18	2.2	18	85	0	51	12	23	2	61	1.43
64838378--64838470	18	5.2	18	88	0	141	27	23	16	32	1.96
64838378--64838472	36	2.6	36	93	0	163	28	23	16	31	1.96
64844976--64845063	45	2.0	45	97	0	167	27	13	28	30	1.94
64846056--64846283	43	5.3	43	83	2	264	23	17	29	29	1.97
64849818--64849867	24	2.1	24	85	7	66	8	0	12	80	0.92
64851780--64851831	23	2.3	23	82	0	68	63	7	0	28	1.22
64853858--64853897	15	2.7	15	88	7	55	30	2	0	67	1.04
64854293--64854509	76	2.8	76	81	5	240	34	15	10	39	1.82
64854266--64854574	77	4.0	77	82	2	325	32	15	12	39	1.85
64854657--64854810	84	1.8	83	84	4	211	30	9	11	48	1.71
64854859--64854897	19	2.0	20	85	5	53	33	0	10	56	1.33
64858391--64858455	21	3.2	21	68	12	64	15	27	18	38	1.91
64858373--64858473	39	2.6	39	87	0	148	14	26	21	36	1.93
64859343--64859383	20	2.0	20	100	0	82	56	14	0	29	1.39
64862986--64863013	14	2.0	14	100	0	56	35	7	14	42	1.73
64866164--64866214	21	2.5	20	78	12	59	50	3	3	41	1.39
64866171--64866236	21	3.0	22	76	6	55	62	3	1	33	1.20
64866676--64866719	21	2.1	21	86	0	61	34	0	4	61	1.16
64866685--64866734	21	2.3	21	86	6	64	34	0	2	64	1.05
64866760--64866798	21	2.0	21	90	10	64	51	0	0	48	1.00
64871022--64871484	222	2.1	220	93	3	786	31	19	20	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64878415--64878447	7	4.7	7	100	0	66	54	0	0	45	0.99
64881817--64881936	25	4.5	25	74	12	96	55	5	6	32	1.47
64881896--64881961	15	4.3	15	83	7	71	57	0	6	36	1.23
64881958--64882020	24	2.6	24	83	11	76	52	4	4	38	1.44
64882071--64882135	21	3.2	20	81	10	80	58	4	1	35	1.28
64882118--64882184	3	22.0	3	73	14	57	62	0	2	34	1.10
64896258--64896293	14	2.6	14	100	0	72	47	11	16	25	1.79
64898506--64898669	3	54.7	3	67	18	74	31	6	2	59	1.36
64898508--64898553	23	2.0	23	83	8	58	28	6	0	65	1.17
64898887--64898941	19	3.2	16	80	16	65	38	1	0	60	1.08
64898903--64899021	23	5.3	23	81	10	106	34	3	3	58	1.31
64898899--64899017	43	2.8	42	80	10	132	34	3	3	58	1.31
64898902--64899011	44	2.5	45	82	10	122	33	3	3	59	1.32
64899099--64899254	25	6.4	24	73	18	90	33	8	5	52	1.55
64907541--64907601	20	3.0	20	87	4	68	45	27	11	14	1.80
64907552--64907601	20	2.5	20	93	0	82	48	26	12	14	1.78
64910669--64911089	144	2.9	143	79	7	429	29	16	20	33	1.95
64910669--64911127	75	6.3	73	80	8	436	29	16	20	33	1.94
64913032--64913193	3	53.7	3	65	21	63	31	6	2	59	1.37
64913034--64913079	23	2.0	23	83	8	58	28	6	0	65	1.17
64913043--64913118	14	5.4	14	71	16	50	25	7	2	64	1.34
64913041--64913107	35	1.9	35	84	6	91	25	8	2	62	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64913105--64913164	17	3.5	17	80	6	59	35	6	1	56	1.35
64913122--64913182	16	3.7	17	79	16	58	32	6	3	57	1.41
64913154--64913204	24	2.1	24	82	13	61	31	1	7	58	1.37
64913195--64913225	16	1.9	16	93	0	53	32	0	12	54	1.38
64913427--64913543	23	5.2	22	78	11	114	32	2	4	60	1.29
64913426--64913537	45	2.5	45	83	9	133	32	2	4	60	1.30
64913541--64913575	16	2.1	17	89	5	54	25	0	22	51	1.48
64916401--64916470	27	2.6	27	86	6	90	51	2	15	30	1.58
64916454--64916550	26	3.6	27	77	5	99	56	1	8	34	1.36
64918572--64918699	68	1.9	65	93	4	220	30	8	11	49	1.69
64919477--64919584	26	4.2	26	89	0	171	32	9	23	35	1.86
64921368--64921791	137	3.1	137	97	0	803	25	18	24	31	1.98
64926120--64926148	3	9.7	3	100	0	58	34	0	0	65	0.93
64926417--64926510	48	1.9	49	87	6	138	53	2	14	29	1.53
64926513--64926548	18	2.0	18	100	0	72	50	0	5	44	1.25
64927176--64927239	31	2.1	31	82	5	76	56	9	10	23	1.63
64929373--64929473	17	5.9	17	72	4	60	43	15	10	29	1.81
64937283--64937337	23	2.5	23	85	11	71	60	0	40	0	0.97
64937347--64937423	30	2.5	31	78	12	88	59	0	40	0	0.97
64948920--64948968	21	2.4	21	90	10	75	51	4	4	40	1.40
64949869--64950038	9	17.9	9	65	18	60	36	1	4	58	1.25
64949870--64949952	23	3.6	23	68	17	64	37	1	2	59	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64949965--64950027	19	3.2	20	73	13	60	34	0	7	57	1.28
64958229--64958261	16	2.0	17	88	5	50	24	9	0	66	1.20
64963890--64963928	2	19.5	2	83	0	51	2	56	0	41	1.13
64976572--64976608	18	2.0	18	89	5	56	18	0	8	72	1.08
64984067--64984146	40	2.0	40	95	0	142	40	15	16	28	1.88
64987558--64987590	5	6.6	5	92	0	57	39	0	24	36	1.56
64987707--64987737	12	2.5	12	94	5	53	35	0	38	25	1.56
64990005--64990073	29	2.4	29	80	9	70	27	36	20	15	1.93
64990713--64990786	31	2.4	31	81	0	85	37	39	4	18	1.70
64991404--64991708	152	2.0	152	96	1	567	32	22	15	30	1.95
64993363--64993408	20	2.3	20	85	7	58	36	19	4	39	1.72
64994070--64994153	32	2.6	32	84	3	89	25	34	20	20	1.96
64994451--64994483	11	2.9	12	86	13	52	33	0	0	66	0.92
65001651--65001772	44	2.7	46	80	5	140	27	23	13	34	1.93
65004852--65004942	40	2.3	40	84	0	119	24	23	30	21	1.99
65004852--65004953	40	2.5	40	80	3	116	26	23	29	20	1.99
65006344--65006403	19	3.0	20	85	7	77	46	0	11	41	1.40
65007757--65007796	18	2.2	18	86	8	55	20	0	12	67	1.22
65008011--65008095	43	2.0	42	83	2	107	52	2	22	22	1.58
65013179--65013377	103	1.9	103	88	0	299	41	8	14	35	1.75
65021011--65021057	24	2.0	24	86	0	67	21	25	4	48	1.68
65021096--65021134	18	2.2	17	86	4	51	48	0	7	43	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65021278--65021321	17	2.5	17	81	7	52	65	2	0	31	1.05
65026839--65026880	13	2.9	15	79	17	52	64	2	0	33	1.07
65026970--65027010	18	2.2	19	91	4	66	63	0	2	34	1.08
65028713--65028757	21	2.1	21	83	0	54	22	0	20	57	1.40
65038254--65038287	17	2.0	17	100	0	68	29	17	11	41	1.85
65040578--65040622	7	6.4	7	100	0	90	40	13	31	15	1.86
65041610--65041682	17	4.5	17	72	16	57	54	2	2	39	1.29
65042076--65042142	29	2.3	29	86	0	89	37	10	22	29	1.88
65048643--65048677	17	2.1	17	100	0	70	45	17	17	20	1.85
65058890--65058920	4	8.0	4	92	7	55	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344