Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  331  of  344  ( 41197 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107601932--107601963
16
1.9
17
93
6
57
43
9
6
40
1.62
107601933--107601974
16
2.7
16
85
10
52
50
7
4
38
1.51
107608818--107608910
18
5.2
18
90
0
150
31
16
24
27
1.96
107608818--107608910
36
2.6
36
94
0
168
31
16
24
27
1.96
107611412--107611454
12
3.5
12
81
6
59
74
9
2
13
1.16
107611412--107611466
24
2.2
25
93
3
94
70
10
3
14
1.28
107611425--107611465
12
3.4
12
80
12
57
70
12
4
12
1.31
107616364--107616388
9
2.8
9
100
0
50
32
0
44
24
1.54
107621221--107621265
22
2.0
22
100
0
90
42
17
8
31
1.80
107623561--107623605
15
3.0
15
86
0
63
55
0
13
31
1.38
107623882--107623906
4
6.2
4
100
0
50
72
0
0
28
0.86
107626798--107626853
28
2.0
29
82
3
69
62
0
10
26
1.28
107631283--107631588
127
2.4
127
80
1
362
34
21
17
26
1.95
107633453--107633562
26
4.2
26
94
2
177
34
4
24
36
1.76
107636153--107636532
131
2.9
131
89
0
582
29
19
18
31
1.96
107648373--107649074
44
16.0
44
87
0
866
29
15
28
26
1.96
107651675--107652054
131
2.9
131
90
0
582
29
19
18
31
1.96
107652901--107652943
16
2.8
15
75
6
50
39
18
0
41
1.51
107655445--107655588
64
2.3
63
91
1
225
43
13
17
25
1.85
107658994--107659060
23
2.8
24
82
10
68
46
31
0
22
1.52
107660242--107660614
117
3.2
117
79
12
363
27
6
8
58
1.52
107660814--107660875
3
22.3
3
76
12
53
27
3
0
69
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107660796--107660858
18
3.3
20
81
14
64
26
1
0
71
0.95
107660785--107660872
41
2.1
43
80
6
99
30
2
1
65
1.12
107661346--107661373
3
9.3
3
100
0
56
32
0
0
67
0.91
107666791--107666847
30
1.9
29
86
10
80
40
35
10
14
1.80
107668085--107668117
12
2.8
12
82
17
50
36
0
0
63
0.95
107668083--107668115
16
2.1
15
94
5
57
36
0
0
63
0.95
107668133--107668276
7
21.4
7
67
22
51
35
5
0
59
1.21
107672196--107672238
15
2.9
15
80
16
54
25
25
9
39
1.85
107681987--107682039
26
2.0
26
82
7
63
26
15
20
37
1.92
107683524--107683633
26
4.2
26
96
0
184
36
23
6
33
1.80
107684657--107684713
30
1.9
29
89
3
87
40
36
8
14
1.76
107684652--107684724
30
2.5
30
81
2
85
41
39
6
12
1.69
107685936--107685968
16
2.1
15
94
5
57
36
0
0
63
0.95
107685986--107686128
7
21.4
7
66
23
51
35
5
0
58
1.21
107690016--107690058
15
2.9
15
80
16
54
25
25
9
39
1.85
107699618--107699670
26
2.0
26
82
7
63
26
15
20
37
1.92
107701158--107701267
26
4.2
26
96
0
184
36
23
6
33
1.80
107702292--107702348
30
1.9
29
89
3
87
40
36
8
14
1.76
107702287--107702359
30
2.5
30
81
2
85
41
39
6
12
1.69
107703590--107703622
16
2.1
15
94
5
57
36
0
0
63
0.95
107703640--107703784
7
21.4
7
67
21
51
35
5
0
58
1.21
107709569--107709610
19
2.3
19
87
4
59
54
0
2
42
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107713177--107713224
24
1.9
26
84
16
66
58
6
0
35
1.23
107713424--107713470
21
2.3
21
89
7
71
59
2
0
38
1.09
107713428--107713490
23
2.7
24
82
7
76
55
3
4
36
1.37
107715383--107715799
88
4.7
87
77
9
382
36
19
16
26
1.93
107715791--107715960
89
1.9
89
90
2
270
32
21
18
28
1.96
107715877--107716036
75
2.2
72
89
3
257
33
23
16
26
1.96
107716016--107716050
14
2.5
14
95
0
61
60
8
14
17
1.58
107715624--107716288
164
4.1
161
86
6
914
33
21
18
26
1.96
107716030--107716178
73
2.0
72
83
6
174
31
20
19
28
1.97
107715624--107716289
325
2.0
325
96
0
1235
33
21
18
26
1.96
107716113--107716359
89
2.7
91
88
4
367
33
21
16
29
1.95
107730572--107730617
18
2.4
18
85
7
56
67
6
4
21
1.32
107730572--107730615
19
2.2
20
84
4
54
68
6
4
20
1.31
107732632--107732741
26
4.2
26
95
2
177
36
24
4
34
1.76
107733435--107733492
29
2.0
29
83
10
73
34
8
3
53
1.49
107734601--107734895
127
2.3
127
81
1
349
27
16
21
34
1.95
107739323--107739378
28
2.0
29
82
3
69
26
10
0
62
1.28
107758983--107759090
26
4.2
26
97
0
207
30
6
26
36
1.82
107762433--107762459
3
9.0
3
100
0
54
66
0
0
33
0.92
107781374--107781449
37
2.1
37
94
0
134
35
17
14
32
1.90
107782466--107782498
2
16.5
2
93
0
57
54
0
0
45
0.99
107785416--107785490
29
2.6
29
93
0
123
36
8
2
53
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107790242--107790268
14
1.9
14
100
0
54
0
3
14
81
0.82
107790674--107790707
15
2.3
15
89
0
50
70
0
0
29
0.87
107799341--107799433
18
5.2
18
93
0
159
31
17
24
26
1.97
107799341--107799433
36
2.6
36
98
0
177
31
17
24
26
1.97
107807037--107807075
16
2.4
16
91
0
60
43
5
20
30
1.73
107807225--107807251
7
3.9
7
100
0
54
70
0
0
29
0.88
107807259--107807301
14
2.9
15
82
10
52
55
0
0
44
0.99
107807319--107807369
15
3.3
16
81
8
61
43
0
0
56
0.99
107807867--107808052
92
2.0
92
100
0
372
33
6
17
43
1.74
107808045--107808102
23
2.8
20
72
23
55
29
8
8
53
1.61
107808903--107808953
21
2.4
21
90
0
75
17
5
11
64
1.45
107812766--107812815
24
2.1
24
100
0
100
34
16
16
34
1.90
107816386--107816432
21
2.2
22
92
3
78
21
19
38
21
1.94
107819539--107819583
23
2.0
23
82
8
56
40
13
8
37
1.76
107824496--107824541
16
2.9
16
90
0
74
41
6
30
21
1.78
107824521--107824611
44
2.0
46
91
4
150
26
3
30
39
1.72
107824521--107824627
46
2.5
44
85
11
143
28
2
30
37
1.72
107824770--107824925
17
10.5
15
65
30
61
54
2
1
41
1.22
107824775--107824808
17
2.0
17
100
0
68
58
0
0
41
0.98
107824892--107824925
17
2.0
17
100
0
68
58
0
0
41
0.98
107824755--107825244
117
4.3
117
93
3
795
51
3
1
42
1.30
107825004--107825042
17
2.5
15
84
15
60
61
0
0
38
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107825009--107825042
17
2.0
17
100
0
68
58
0
0
41
0.98
107825075--107825114
20
2.0
21
85
5
55
60
5
0
35
1.19
107825082--107825161
28
2.8
28
81
11
92
56
1
0
42
1.07
107824859--107825194
43
8.3
41
65
24
137
51
4
1
42
1.31
107825204--107825267
32
2.0
32
81
0
74
48
3
0
48
1.17
107830136--107830178
22
2.0
22
95
0
77
27
11
13
46
1.78
107831690--107831782
47
2.0
47
93
0
159
46
6
6
40
1.55
107837786--107837918
66
2.0
66
98
0
257
24
19
21
33
1.97
107840818--107840963
53
2.7
53
89
4
204
29
27
15
27
1.96
107857197--107857318
39
3.1
39
91
0
190
16
25
27
31
1.96
107858540--107858573
16
2.1
17
88
5
52
44
8
2
44
1.50
107861458--107861601
53
2.7
53
90
4
209
26
15
28
29
1.96
107868940--107869089
53
2.8
53
88
5
205
26
16
28
30
1.96
107874392--107874417
7
3.7
7
100
0
52
57
15
0
26
1.38
107875534--107875581
22
2.2
22
85
3
62
50
4
16
29
1.64
107875765--107875820
28
2.0
29
82
3
69
41
16
14
28
1.87
107876359--107876419
23
2.8
22
83
11
72
68
4
0
26
1.09
107876470--107876541
26
2.7
25
79
10
72
65
0
6
27
1.18
107891317--107891350
16
2.1
17
88
5
52
44
2
8
44
1.50
107892572--107892732
39
4.1
39
88
1
225
31
27
24
16
1.97
107895202--107895426
40
5.7
40
84
5
260
25
21
27
25
1.99
107895209--107895459
119
2.1
119
79
7
260
27
20
26
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107903315--107903539
40
5.7
40
84
5
269
24
21
28
25
1.99
107903315--107903572
119
2.2
119
81
6
283
25
21
27
25
1.99
107908495--107908602
26
4.2
26
91
0
180
35
24
8
32
1.85
107931409--107931541
18
7.5
18
88
5
191
36
13
12
38
1.82
107931409--107931550
35
4.0
35
92
2
221
36
14
11
38
1.81
107938378--107938551
47
3.7
46
77
13
176
30
29
18
21
1.97
107938386--107938557
94
1.8
93
89
1
272
29
29
19
21
1.98
107938775--107938822
23
2.1
23
100
0
96
62
16
0
20
1.33
107938999--107939058
30
2.0
30
83
6
77
30
26
6
36
1.82
107947500--107947604
37
2.9
37
91
2
169
24
21
17
36
1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344