genome.fa.s10.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  141  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47255504--47255547	22	2.0	22	82	13	54	70	0	0	29	0.88
47255506--47255538	13	2.4	14	85	5	50	69	0	0	30	0.88
47256880--47256925	20	2.3	19	88	11	65	60	6	0	32	1.22
47257550--47257583	2	17.0	2	93	0	59	47	0	52	0	1.00
47266779--47266815	19	1.9	19	88	0	56	32	10	21	35	1.88
47284810--47284870	24	2.5	24	86	5	79	34	29	16	19	1.94
47292032--47292092	24	2.5	24	86	5	79	34	29	16	19	1.94
47294292--47294363	34	2.1	34	82	7	85	25	22	20	31	1.98
47302086--47302202	56	2.1	56	98	0	225	44	8	23	23	1.81
47303335--47303559	79	2.8	79	82	7	276	24	21	28	25	1.99
47303335--47303559	40	5.7	40	84	5	278	24	21	28	25	1.99
47303335--47303592	119	2.2	119	80	6	274	25	21	27	25	1.99
47305797--47305832	18	2.1	17	94	5	63	80	11	0	8	0.90
47309193--47309235	14	3.3	12	79	17	50	37	18	2	41	1.63
47309264--47309323	13	4.4	13	69	19	50	36	13	0	50	1.42
47309260--47309326	21	3.2	21	66	8	64	34	14	0	50	1.44
47309207--47309335	42	3.1	41	85	4	163	31	16	3	48	1.64
47309377--47309441	25	2.6	25	80	0	85	35	24	13	26	1.93
47317530--47317698	46	3.7	45	75	15	175	28	26	21	23	1.99
47317535--47317705	93	1.8	93	91	2	281	28	27	22	22	1.99
47318128--47318187	30	2.0	30	90	0	93	30	25	8	36	1.85
47321770--47321813	19	2.3	18	85	14	54	13	6	25	54	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47323170--47323345	27	6.6	27	78	5	169	34	11	23	30	1.90
47325416--47325473	29	2.1	29	80	6	66	32	20	20	25	1.97
47328256--47328402	61	2.4	61	80	3	163	24	23	14	37	1.92
47330681--47330721	21	1.9	22	85	5	57	48	9	0	41	1.36
47331058--47331133	37	2.1	37	97	0	143	47	13	1	38	1.51
47337119--47337214	48	2.0	48	100	0	192	41	18	14	25	1.88
47337869--47338096	125	1.8	125	92	0	384	25	38	7	28	1.82
47343816--47343889	27	2.8	25	80	13	85	25	16	16	41	1.88
47353983--47354206	104	2.2	104	92	1	369	31	31	18	17	1.95
47360990--47361136	69	2.1	70	91	2	235	31	27	17	23	1.97
47361058--47361265	102	2.0	102	90	5	332	32	29	18	19	1.96
47374367--47374590	40	5.7	40	82	8	246	25	28	21	24	1.99
47374367--47374543	39	4.5	39	88	7	234	25	28	19	25	1.99
47374367--47374537	79	2.2	79	88	6	249	25	28	20	25	1.99
47374367--47374590	79	2.8	78	81	8	238	25	28	21	24	1.99
47379837--47380021	79	2.3	81	85	7	245	25	27	22	24	2.00
47379837--47380021	40	4.7	40	82	7	225	25	27	22	24	2.00
47382047--47382145	41	2.4	41	82	0	117	31	16	22	30	1.95
47383268--47383337	25	2.8	25	95	0	122	25	22	25	25	2.00
47383393--47383445	11	5.0	11	81	6	65	30	20	13	35	1.91
47383385--47383433	21	2.3	21	96	0	89	36	18	10	34	1.85
47383557--47383741	27	7.0	27	83	1	205	24	18	19	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47383582--47383749	54	3.1	53	87	3	237	25	17	18	38	1.92
47383680--47383916	81	3.0	79	77	11	218	31	11	18	38	1.86
47383731--47383952	81	2.8	79	83	4	268	31	10	19	37	1.86
47383734--47383940	27	7.7	27	84	5	242	31	10	18	39	1.84
47383796--47383963	54	3.1	54	85	1	149	33	10	18	37	1.84
47383947--47384085	27	5.1	27	89	0	188	41	7	22	28	1.81
47383734--47383979	81	3.1	79	77	8	194	32	10	19	36	1.86
47383823--47384078	81	3.2	80	79	3	228	37	9	19	33	1.84
47387783--47387940	41	3.9	41	78	2	192	29	27	21	21	1.99
47392540--47392637	45	2.1	46	81	7	110	32	17	25	24	1.97
47392550--47392661	24	4.7	24	79	10	99	32	16	23	28	1.96
47394085--47394138	21	2.7	21	88	11	78	53	29	0	16	1.43
47394319--47394449	47	2.7	47	82	5	147	34	29	14	21	1.93
47396352--47396404	21	2.5	21	100	0	106	15	32	30	22	1.94
47397394--47397436	20	2.2	20	86	0	59	39	32	0	27	1.57
47399667--47399716	24	2.1	24	85	7	66	30	30	16	24	1.96
47401829--47402006	27	6.6	27	85	3	214	26	14	28	30	1.95
47401830--47401985	82	1.9	81	89	3	242	26	14	28	30	1.95
47401826--47402006	82	2.2	81	84	2	238	27	14	27	30	1.95
47406001--47406191	47	4.1	47	94	0	301	31	11	30	25	1.91
47406165--47406255	46	2.0	46	84	0	119	32	9	31	25	1.89
47406400--47406512	37	3.1	37	90	0	172	23	18	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47426146--47426319	46	3.8	46	75	11	185	30	30	18	20	1.97
47426154--47426324	92	1.8	93	93	1	299	29	30	19	19	1.97
47428238--47428317	15	5.4	15	77	7	83	58	12	17	11	1.62
47428249--47428326	15	5.2	15	77	9	70	56	14	16	12	1.68
47431488--47431851	40	9.1	40	95	0	656	28	18	27	26	1.98
47431488--47432006	120	4.2	120	87	7	761	27	19	27	25	1.99
47431837--47431865	14	2.1	14	100	0	58	34	6	20	37	1.80
47431797--47431905	54	2.0	54	96	0	200	27	16	26	29	1.97
47431851--47432006	40	3.9	40	88	3	224	26	21	28	23	1.99
47431757--47431945	94	2.0	94	93	2	326	28	17	26	27	1.98
47431717--47431984	134	2.0	134	92	1	448	27	18	27	26	1.98
47431677--47432006	174	1.9	174	91	1	545	27	19	27	25	1.99
47431859--47432033	80	2.2	80	86	1	235	25	21	28	24	1.99
47438772--47439276	40	12.6	40	92	0	832	27	20	27	24	1.99
47442180--47442354	46	3.8	46	76	13	187	29	29	20	21	1.98
47442188--47442359	93	1.8	93	91	0	281	29	29	20	20	1.98
47444515--47444567	14	3.7	14	79	20	65	22	22	11	43	1.85
47447007--47447084	18	4.3	18	76	12	70	78	1	17	2	0.94
47447993--47448616	44	14.2	44	69	12	277	32	18	21	27	1.97
47447985--47448228	132	1.8	132	90	0	389	31	19	20	27	1.97
47447971--47448259	132	2.2	132	82	7	388	34	18	20	25	1.96
47448210--47448611	132	3.1	132	91	0	626	33	17	22	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47447993--47448603	220	2.8	219	81	5	551	33	18	21	27	1.96
47448122--47448603	88	5.5	87	76	7	345	33	17	21	27	1.96
47448591--47448829	44	5.4	44	73	14	188	28	15	26	28	1.96
47448601--47448895	131	2.3	131	90	1	475	27	15	25	30	1.96
47449220--47449273	28	2.0	28	88	3	83	38	38	7	14	1.75
47450401--47450486	12	6.8	12	73	20	59	31	5	1	61	1.27
47450709--47450766	18	2.8	21	77	15	59	41	5	0	53	1.23
47452213--47452334	46	2.6	47	84	5	147	26	22	14	36	1.93
47454819--47454876	27	2.3	26	79	8	66	0	41	1	56	1.09
47455482--47455518	7	5.1	7	96	3	65	54	0	0	45	1.00
47455847--47455888	21	2.0	21	90	0	66	33	47	0	19	1.49
47455855--47455895	14	2.9	14	92	0	55	34	46	0	19	1.50
47455883--47455936	22	2.5	22	80	14	67	42	31	1	24	1.65
47455901--47455931	15	2.1	15	93	0	53	41	38	0	19	1.51
47455941--47455986	21	2.2	21	88	0	65	45	28	0	26	1.54
47456085--47456146	22	2.9	20	79	11	52	43	30	3	22	1.69
47456110--47456160	14	3.6	14	75	2	57	47	31	5	15	1.70
47456106--47456146	21	2.0	21	85	0	55	46	31	4	17	1.69
47456138--47456212	21	3.4	21	78	10	62	37	41	4	17	1.68
47456167--47456226	25	2.4	26	81	15	74	36	45	1	16	1.58
47456605--47456754	79	1.9	81	84	2	205	27	20	20	31	1.98
47458836--47458889	22	2.5	22	73	11	56	22	25	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47460035--47460066	10	3.2	10	95	0	55	50	0	21	28	1.49
47461781--47461878	27	3.7	27	82	8	103	32	17	20	29	1.95
47461860--47462207	27	12.9	27	79	7	215	39	18	10	32	1.84
47462466--47462590	41	3.0	41	90	0	205	22	22	28	27	1.99
47465139--47465244	48	2.2	48	94	0	176	41	13	9	35	1.76
47465150--47465247	48	2.0	48	100	0	196	38	14	10	36	1.80
47467072--47467150	39	2.0	39	92	0	131	45	8	21	24	1.80
47468404--47468590	30	6.4	30	83	11	244	48	13	17	20	1.81
47468404--47468590	85	2.2	85	97	0	347	48	13	17	20	1.81
47468404--47468565	6	26.8	6	77	15	165	48	14	16	20	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344