Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  303  of  344  ( 41197 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100420330--100420462
47
2.8
47
84
7
162
31
10
6
51
1.60
100426056--100426230
46
3.8
46
77
13
187
28
28
21
22
1.99
100426065--100426235
93
1.8
93
91
0
279
28
28
21
22
1.99
100426682--100426721
16
2.5
16
100
0
80
22
20
7
50
1.73
100428634--100428712
15
5.4
15
73
10
65
58
12
17
11
1.63
100428645--100428721
15
5.2
15
71
10
52
55
14
16
12
1.69
100431598--100431767
46
3.7
45
75
10
173
30
28
20
21
1.98
100433602--100433643
14
2.9
15
86
13
61
0
16
2
80
0.81
100434223--100434247
9
2.8
9
100
0
50
0
0
8
92
0.40
100439110--100439206
29
3.5
28
74
14
76
56
3
10
29
1.48
100443414--100443463
25
2.0
25
100
0
100
24
16
8
52
1.70
100445275--100445364
19
4.8
19
93
5
157
38
11
14
35
1.82
100445265--100445364
36
2.7
35
77
20
105
39
11
14
36
1.81
100447122--100447173
16
3.2
16
100
0
104
25
0
36
38
1.56
100447154--100447244
45
2.0
45
85
2
121
27
6
28
37
1.82
100447398--100447860
122
3.8
121
94
1
793
48
6
2
42
1.40
100447398--100447860
243
1.9
242
94
0
818
48
6
2
42
1.40
100447813--100447881
16
4.4
16
74
20
74
40
10
0
49
1.37
100449823--100449874
24
2.2
24
96
0
95
53
7
1
36
1.41
100450559--100450873
128
2.5
127
91
1
522
38
22
13
25
1.91
100451479--100451559
35
2.6
30
77
20
87
62
3
2
30
1.25
100452842--100452869
14
2.0
14
100
0
56
57
0
21
21
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100453260--100453425
83
2.0
83
98
0
323
35
21
13
29
1.91
100461596--100461624
7
4.3
7
91
8
51
72
13
0
13
1.13
100461596--100461624
13
2.1
14
93
6
51
72
13
0
13
1.13
100470757--100470796
20
2.0
20
100
0
80
20
10
35
35
1.86
100471434--100471490
24
2.4
24
82
5
71
47
8
1
42
1.45
100482920--100482982
30
2.1
30
88
5
92
25
6
9
58
1.53
100484226--100484256
7
4.4
7
100
0
62
38
0
0
61
0.96
100489741--100489812
36
2.0
36
91
0
117
20
22
18
38
1.93
100495471--100495526
14
3.9
14
73
13
51
55
1
5
37
1.33
100497340--100497895
207
2.7
207
89
1
839
27
23
18
30
1.98
100500627--100500751
43
2.9
43
95
0
223
27
20
29
22
1.99
100501126--100501165
21
1.9
21
89
0
62
0
47
22
30
1.52
100501577--100501605
14
2.1
14
93
6
51
58
6
0
34
1.25
100501772--100501810
17
2.4
17
86
4
53
48
0
10
41
1.37
100506641--100506830
9
20.6
9
72
11
107
37
1
13
47
1.52
100506641--100506803
71
2.3
69
84
4
202
38
1
12
47
1.50
100506677--100506861
96
2.0
90
86
9
259
38
2
11
47
1.53
100506617--100506830
114
1.9
114
84
5
290
38
1
13
47
1.51
100506677--100506861
87
2.1
87
84
7
234
38
2
11
47
1.53
100506935--100506990
15
3.8
15
76
21
64
51
0
1
46
1.11
100507200--100508076
355
2.5
356
96
0
1614
37
12
15
35
1.85
100508301--100508329
15
1.9
15
100
0
58
48
20
6
24
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100508531--100508897
183
2.0
183
97
0
689
42
14
15
26
1.86
100508970--100508999
14
2.2
13
94
5
51
36
13
0
50
1.42
100511541--100511589
15
3.5
15
68
21
52
30
0
51
18
1.47
100511540--100511596
26
2.2
26
96
0
105
29
0
47
22
1.52
100511881--100511938
28
2.1
28
83
6
73
36
29
1
32
1.68
100511915--100511958
21
2.1
21
91
0
70
34
34
2
29
1.70
100512195--100512238
21
2.0
22
91
4
72
43
38
0
18
1.50
100512311--100512613
41
7.4
41
91
1
484
21
23
19
35
1.96
100521026--100521081
14
3.9
14
73
13
51
55
3
3
37
1.35
100524027--100524077
16
3.2
16
97
0
93
52
13
11
21
1.72
100526615--100526640
3
8.7
3
100
0
52
69
0
0
30
0.89
100528795--100528895
39
2.7
36
77
17
98
50
7
0
40
1.38
100529139--100529172
12
2.9
12
86
4
52
32
0
0
67
0.91
100529296--100529358
30
2.1
30
91
5
101
58
9
3
28
1.45
100529398--100529440
22
2.0
22
85
0
59
58
11
11
18
1.63
100529405--100529445
11
3.7
11
80
0
55
56
9
14
19
1.66
100534308--100534347
19
2.1
19
85
0
53
70
5
0
25
1.08
100534508--100534570
19
3.3
19
95
2
108
50
12
0
36
1.41
100534508--100534613
19
5.5
19
81
11
99
52
9
0
36
1.40
100534501--100534629
39
3.3
38
78
8
116
55
8
0
34
1.36
100534559--100534643
39
2.2
39
83
8
102
60
7
1
31
1.31
100535206--100535300
9
10.4
9
75
15
88
31
1
5
62
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100535206--100535280
36
2.1
36
85
9
100
32
0
4
64
1.12
100535206--100535280
19
4.2
17
78
17
80
32
0
4
64
1.12
100538123--100538172
19
2.7
18
85
14
59
66
0
2
32
1.03
100538113--100538172
17
3.3
18
79
9
59
63
1
1
33
1.14
100538133--100538172
20
2.0
20
85
9
55
70
0
2
27
1.01
100538430--100538467
20
1.9
20
100
0
76
31
31
5
31
1.80
100539528--100539601
38
1.9
38
91
0
121
27
9
21
41
1.84
100542461--100542494
16
2.1
16
88
0
50
41
2
20
35
1.68
100543057--100543097
21
2.0
21
85
0
55
34
9
14
41
1.79
100544106--100544147
10
4.1
10
80
14
50
54
28
0
16
1.42
100544600--100544634
17
2.1
17
89
10
54
22
28
0
48
1.51
100544916--100545006
40
2.3
39
84
1
119
30
26
13
29
1.94
100549849--100549905
19
3.1
18
75
9
53
7
17
1
73
1.14
100551156--100551190
17
2.0
18
88
5
54
60
0
2
37
1.12
100554013--100554075
23
3.0
20
80
13
56
63
4
0
31
1.15
100554088--100554121
17
2.1
17
88
5
52
70
2
0
26
1.01
100557120--100557313
96
2.0
96
86
0
271
40
15
29
13
1.86
100558946--100558995
22
2.2
24
85
7
68
32
6
4
58
1.41
100559799--100559845
13
3.7
13
83
16
55
23
0
2
74
0.93
100561059--100561171
47
2.4
47
83
5
131
45
13
15
26
1.82
100564443--100564468
3
8.7
3
100
0
52
30
0
0
69
0.89
100572466--100572865
41
10.1
40
81
9
376
35
23
22
18
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100572668--100572723
28
2.0
28
89
0
85
39
21
19
19
1.93
100572587--100572804
109
2.0
110
90
2
350
34
25
23
16
1.96
100572549--100572845
150
2.0
151
89
3
465
34
24
22
18
1.96
100576871--100577255
133
2.9
133
98
0
725
20
9
18
51
1.73
100577138--100577177
21
2.0
20
85
5
53
12
7
17
62
1.52
100579203--100579242
21
1.9
21
94
0
71
30
10
12
47
1.74
100585732--100585833
44
2.3
45
88
6
145
18
19
22
39
1.93
100585732--100585960
43
5.3
43
79
6
169
21
22
23
31
1.98
100585885--100585962
41
1.9
40
89
2
120
17
25
26
29
1.98
100587777--100587813
5
7.4
5
96
0
65
62
2
0
35
1.10
100590955--100591054
43
2.3
43
84
6
123
27
25
23
25
2.00
100597027--100597154
9
13.6
9
76
9
121
31
1
21
46
1.61
100597027--100597154
57
2.2
57
84
0
166
31
1
21
46
1.61
100598315--100598676
64
5.7
64
96
2
642
46
3
10
38
1.56
100601955--100602137
80
2.3
80
85
1
242
36
34
3
26
1.73
100602052--100602137
22
4.0
22
74
6
68
38
33
2
25
1.69
100602122--100602178
14
4.0
14
77
8
53
38
35
0
26
1.57
100602349--100602386
16
2.6
14
91
8
58
47
31
0
21
1.51
100602619--100602672
14
3.8
14
73
11
56
24
1
24
50
1.60
100602617--100602671
28
1.9
29
88
3
85
25
1
23
49
1.60
100603195--100603352
43
3.8
41
79
8
167
30
23
18
27
1.98
100603373--100603630
140
1.8
139
85
5
356
25
24
21
28
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100604699--100605060
64
5.7
64
96
2
642
38
10
3
46
1.56
100604699--100605060
189
1.9
189
94
2
645
38
10
3
46
1.56
100606222--100606349
9
13.6
9
76
9
121
46
21
1
31
1.61
100606239--100606314
39
1.9
39
97
0
143
44
21
1
32
1.60
100606235--100606347
57
2.0
57
87
0
163
45
23
1
30
1.63
100611155--100612237
537
2.0
537
99
0
2157
32
15
15
36
1.90
100617473--100617509
12
3.0
13
84
11
51
29
40
18
10
1.85
100620959--100621014
28
2.0
28
96
0
103
30
5
7
57
1.48
100627739--100627858
60
2.0
60
95
0
213
33
14
25
27
1.94
100630562--100630638
19
4.2
19
75
12
63
61
0
3
35
1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344