Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  95  of  344  ( 41197 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31746833--31747091
115
2.3
115
91
0
410
33
18
16
30
1.94
31747907--31747970
31
2.1
31
93
0
110
26
26
6
40
1.79
31752086--31752128
21
2.0
22
90
4
70
44
0
2
53
1.13
31765573--31765654
26
3.2
26
86
6
121
40
23
3
32
1.72
31769579--31769637
24
2.5
24
85
0
82
32
32
18
16
1.94
31769780--31769838
24
2.5
24
88
2
93
33
33
15
16
1.91
31769950--31770009
24
2.5
24
88
0
93
35
31
16
16
1.92
31769678--31770270
171
3.4
171
90
3
852
32
27
21
18
1.96
31771464--31771504
18
2.2
19
86
4
57
65
0
4
29
1.13
31774465--31774516
18
2.8
18
85
14
70
1
28
0
69
0.99
31777080--31777184
31
3.4
30
69
12
88
56
7
2
33
1.43
31777072--31777189
61
2.0
61
89
1
184
54
9
2
33
1.46
31783492--31783525
16
2.1
16
100
0
68
52
0
11
35
1.38
31787714--31787834
47
2.7
46
78
5
120
27
31
17
23
1.97
31787758--31787877
47
2.5
47
81
11
122
24
32
17
25
1.97
31787802--31787975
94
1.9
94
90
2
278
22
29
20
27
1.98
31787799--31787971
47
3.7
46
72
10
145
22
30
19
27
1.98
31794719--31794839
47
2.6
47
97
0
224
29
28
6
34
1.83
31797568--31797628
30
2.0
30
87
6
88
26
32
21
19
1.97
31801186--31801247
27
2.3
27
85
0
79
24
20
12
41
1.87
31804357--31804381
4
6.2
4
100
0
50
24
0
0
76
0.80
31805934--31805975
18
2.4
18
84
4
59
69
0
9
21
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31815718--31815903
77
2.3
78
89
5
284
47
18
6
27
1.72
31828620--31828764
76
1.9
76
80
5
168
48
10
12
28
1.74
31829267--31829356
42
2.1
42
87
2
126
26
47
2
23
1.63
31837666--31837727
29
2.1
29
90
0
97
16
20
38
24
1.92
31848172--31848275
21
4.9
21
72
18
72
62
2
2
31
1.24
31848173--31848248
24
3.4
23
77
13
72
64
1
3
30
1.20
31848353--31848512
3
52.0
3
66
21
50
60
4
3
31
1.34
31848341--31848397
24
2.4
25
80
19
77
63
0
8
28
1.24
31848395--31848439
24
2.0
24
82
8
58
57
6
2
33
1.37
31848402--31848488
28
3.4
25
71
25
67
57
4
2
35
1.32
31848413--31848452
20
2.0
21
85
14
57
57
5
0
37
1.21
31848392--31848487
26
4.0
23
72
21
56
56
6
2
35
1.36
31848455--31848510
28
2.0
29
85
3
78
64
5
0
30
1.16
31849221--31849275
21
2.6
21
88
5
76
65
0
12
21
1.26
31849230--31849285
22
2.6
21
85
5
67
69
0
10
19
1.17
31850314--31850708
79
5.0
80
74
13
302
32
21
16
29
1.95
31850491--31850720
73
3.2
72
84
3
316
33
20
15
29
1.94
31863266--31863338
24
3.4
21
78
15
78
63
1
4
31
1.22
31863495--31863549
24
2.3
24
78
15
60
65
1
9
23
1.31
31863547--31863591
24
2.0
24
86
8
67
57
4
2
35
1.31
31863554--31863639
28
3.4
25
72
24
65
56
4
2
36
1.33
31863565--31863604
20
2.0
21
85
14
57
57
5
0
37
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31863544--31863639
23
4.0
23
72
21
72
56
5
2
36
1.34
31863607--31863662
28
2.0
29
82
10
71
62
5
1
30
1.28
31863724--31863769
18
2.6
18
82
6
58
56
0
6
36
1.25
31866081--31866256
46
3.8
46
74
12
171
22
19
28
29
1.98
31866077--31866247
93
1.8
93
89
0
270
22
19
29
28
1.98
31870755--31870815
29
2.1
30
90
3
97
26
1
13
59
1.44
31874517--31874605
46
1.9
46
88
4
135
39
8
8
42
1.68
31877752--31877893
48
3.0
48
85
2
178
39
33
9
16
1.82
31877802--31878149
177
2.0
177
90
0
552
41
33
12
12
1.81
31877965--31878069
48
2.2
47
83
6
122
38
33
13
15
1.86
31878716--31878746
16
1.9
16
93
0
53
41
35
3
19
1.67
31879175--31879239
33
1.9
35
81
12
82
35
1
4
58
1.28
31880478--31880523
21
2.2
21
84
0
56
23
4
8
63
1.42
31884780--31884861
25
3.2
25
67
16
78
45
17
1
36
1.56
31884753--31884860
51
2.1
51
100
0
216
43
15
1
38
1.58
31888094--31888170
22
3.5
22
76
13
68
35
9
18
37
1.82
31888473--31888581
36
3.1
36
72
6
96
23
22
20
33
1.97
31888502--31888588
35
2.4
36
79
5
106
21
24
21
32
1.98
31888436--31888591
72
2.2
73
82
4
192
23
21
19
35
1.96
31893938--31894064
36
3.5
36
75
8
132
23
24
18
33
1.96
31894250--31894784
228
2.4
226
85
5
733
38
11
7
43
1.68
31894658--31894894
120
2.0
117
84
8
306
34
13
8
42
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31894687--31894903
120
1.8
121
87
3
330
32
13
8
44
1.75
31906968--31907078
42
2.7
41
80
9
127
29
17
25
27
1.97
31911632--31911661
16
1.9
16
93
6
53
50
20
0
30
1.49
31913946--31914139
40
4.9
39
84
5
237
21
28
25
24
1.99
31934913--31935065
46
3.4
47
69
16
153
32
17
26
23
1.97
31934912--31935129
87
2.4
87
90
4
328
30
18
27
24
1.98
31935097--31935229
46
3.0
44
80
8
128
28
18
27
24
1.98
31942909--31942956
20
2.4
20
89
0
69
50
8
10
31
1.66
31967072--31967256
47
4.1
44
77
14
146
30
19
27
22
1.98
31967167--31967256
44
2.0
44
87
8
130
30
20
26
23
1.98
31973911--31974039
46
2.8
46
95
2
224
20
20
28
30
1.98
31976956--31977024
15
4.6
15
83
0
84
11
17
13
57
1.64
31976947--31977034
30
3.0
30
81
8
99
10
17
15
56
1.66
31985135--31985164
10
3.0
10
95
0
51
46
20
0
33
1.51
31992513--31992538
12
2.2
12
100
0
52
50
7
7
34
1.60
32004123--32004190
29
2.3
29
82
0
82
20
14
27
36
1.92
32004123--32004198
29
2.6
28
77
8
80
21
15
27
35
1.94
32007556--32007679
58
2.2
58
97
1
232
38
27
4
29
1.75
32011297--32011333
19
1.9
19
88
0
56
45
18
10
24
1.81
32016867--32017049
79
2.3
81
85
7
241
25
27
22
24
2.00
32016846--32017049
40
5.1
40
81
8
238
25
27
22
24
2.00
32025029--32025213
40
4.7
40
82
6
225
25
27
22
24
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32025031--32025213
79
2.3
81
83
7
232
25
27
22
24
2.00
32035792--32035951
42
3.8
42
86
6
216
31
13
25
29
1.94
32035792--32035957
85
2.0
84
85
5
228
31
13
25
29
1.94
32042327--32042387
30
2.0
30
83
0
77
37
4
26
31
1.77
32042851--32043001
68
2.3
64
80
7
160
29
16
27
26
1.97
32042920--32043102
67
2.8
64
75
8
174
30
16
30
22
1.96
32049795--32049839
17
2.6
17
89
6
65
8
28
37
24
1.86
32052930--32053333
219
1.8
220
87
1
596
27
21
29
21
1.98
32063775--32064099
40
8.2
40
87
3
446
23
22
26
27
1.99
32067274--32067496
119
1.9
120
84
6
301
25
27
21
24
1.99
32067272--32067496
40
5.7
40
84
6
287
25
28
21
24
1.99
32069918--32070014
30
3.2
30
75
2
106
28
26
15
28
1.96
32076934--32077098
40
4.2
40
87
8
223
24
21
27
27
1.99
32076934--32077098
79
2.1
79
85
8
221
24
21
27
27
1.99
32088847--32089031
40
4.7
40
78
6
189
28
28
20
23
1.99
32095839--32096196
47
7.6
47
93
2
574
33
8
29
28
1.86
32108614--32108727
48
2.4
48
79
8
124
32
21
19
26
1.97
32115956--32115996
20
2.0
21
95
4
75
19
9
19
51
1.74
32118688--32118756
33
2.1
33
100
0
138
26
14
27
31
1.95
32122712--32122753
22
1.9
22
85
9
59
16
7
28
47
1.73
32138187--32138288
40
2.5
40
80
9
118
26
27
21
24
1.99
32150013--32150184
93
1.8
93
91
4
285
29
29
20
21
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32150006--32150181
46
3.8
47
75
15
177
30
28
19
21
1.98
32152641--32152775
48
2.8
48
89
0
189
23
21
25
28
1.99
32152641--32152915
48
5.8
48
71
10
170
25
20
26
26
1.99
32155644--32155684
22
1.9
22
95
5
75
14
29
46
9
1.77
32156806--32157031
47
4.8
48
75
11
182
23
30
18
28
1.98
32156807--32157026
46
4.7
45
74
14
137
23
30
18
28
1.98
32156807--32157069
140
1.9
141
81
7
329
23
29
18
28
1.98
32158344--32158414
28
2.5
28
88
8
117
32
15
23
28
1.95
32159827--32160073
40
6.2
40
91
3
376
26
27
22
23
2.00
32161691--32161921
51
4.5
51
90
3
358
30
14
25
29
1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344