Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  270  of  344  ( 41197 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90200928--90201145
47
4.7
46
74
16
159
27
19
29
22
1.98
90203588--90203663
25
3.0
25
84
0
98
19
22
30
27
1.98
90205887--90205930
18
2.4
18
85
7
63
25
0
4
70
1.06
90209428--90209501
10
7.4
10
79
13
73
20
2
1
75
1.00
90209453--90209502
25
2.0
25
88
7
75
26
0
0
74
0.83
90209434--90209493
14
4.1
14
79
10
59
21
1
1
75
0.99
90209434--90209500
14
4.9
14
75
17
54
22
1
1
74
0.98
90209664--90209743
6
13.3
6
73
13
58
16
7
2
73
1.16
90209693--90209743
18
2.7
18
87
9
66
17
5
3
72
1.20
90215889--90215999
40
2.8
40
83
1
98
25
28
23
22
1.99
90215912--90216056
40
3.6
40
85
4
184
23
25
24
26
2.00
90225004--90225229
40
5.7
40
88
4
280
26
22
26
25
2.00
90227054--90227221
40
4.2
40
83
4
106
25
27
23
23
2.00
90227077--90227221
40
3.6
40
85
4
193
23
26
24
25
2.00
90243021--90243440
27
15.7
27
77
7
367
38
19
10
31
1.85
90243021--90243413
54
7.3
54
83
1
425
39
19
9
32
1.84
90243021--90243412
107
3.7
106
83
6
452
39
19
9
31
1.84
90243021--90243426
134
3.0
133
82
5
453
39
18
9
32
1.84
90243392--90243458
27
2.5
27
87
0
89
38
14
17
28
1.90
90248954--90249032
39
2.0
39
85
0
104
18
18
24
37
1.94
90251610--90251765
50
3.1
50
80
7
199
37
27
12
22
1.90
90251610--90251772
25
6.5
25
72
12
120
37
26
12
23
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90272941--90273033
23
4.0
23
81
0
105
47
23
16
12
1.81
90275606--90275701
43
2.2
43
90
0
147
34
11
18
35
1.87
90283055--90283083
13
2.2
13
100
0
58
58
13
13
13
1.63
90295462--90295487
6
4.3
6
100
0
52
15
0
0
84
0.62
90297137--90297169
11
2.8
12
86
9
50
36
0
0
63
0.95
90300761--90301260
47
10.6
47
93
1
829
32
8
29
29
1.87
90300761--90301260
143
3.5
141
93
1
820
32
8
29
29
1.87
90300761--90301260
190
2.6
190
94
0
860
32
8
29
29
1.87
90311676--90311739
31
2.1
31
96
0
119
34
10
32
21
1.89
90320266--90320403
57
2.4
56
83
9
165
30
15
23
31
1.95
90325649--90325826
46
3.8
46
77
4
196
28
27
20
23
1.99
90325657--90325828
93
1.8
93
89
0
272
27
28
20
22
1.99
90328173--90328205
16
2.0
17
88
5
50
69
15
6
9
1.34
90331847--90331914
32
2.1
32
94
0
118
48
5
13
32
1.66
90335488--90335512
10
2.5
10
100
0
50
36
12
12
40
1.79
90335891--90336027
66
2.1
65
83
4
168
23
26
24
25
2.00
90337884--90337917
16
2.1
17
89
10
54
61
0
14
23
1.33
90342453--90342622
40
4.3
40
85
0
207
24
30
21
23
1.99
90350360--90350529
40
4.3
40
85
0
207
24
30
21
23
1.99
90353200--90353312
43
2.7
42
82
5
147
32
19
22
25
1.97
90368083--90368110
6
4.7
6
100
0
56
0
50
0
50
1.00
90371476--90371514
18
2.2
18
90
0
60
12
7
10
69
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90371481--90371526
18
2.5
19
75
10
51
10
10
8
69
1.37
90378962--90378991
9
3.4
9
95
4
53
73
0
0
26
0.84
90385759--90385831
24
3.0
24
91
0
119
38
24
19
17
1.93
90403820--90403854
16
2.2
16
90
10
54
60
0
11
28
1.32
90404661--90404712
26
2.0
25
85
14
70
40
3
25
30
1.73
90405191--90405308
42
2.8
43
82
5
143
28
16
24
30
1.96
90421533--90421604
32
2.3
32
90
4
112
16
22
40
20
1.91
90427246--90427516
46
5.7
48
74
13
217
28
20
28
22
1.98
90428541--90428582
21
2.0
21
95
4
77
9
33
28
28
1.88
90434772--90434966
97
2.0
97
98
0
381
38
17
17
26
1.92
90435588--90435619
6
5.3
6
100
0
64
31
53
15
0
1.43
90436032--90436063
16
2.0
16
100
0
64
43
31
6
18
1.75
90436554--90436594
14
2.9
14
92
0
64
34
7
7
51
1.58
90437880--90437955
29
2.6
29
85
0
107
35
26
9
28
1.87
90444052--90444235
49
3.9
48
79
11
211
23
25
6
44
1.77
90444059--90444196
43
3.0
44
80
12
188
21
26
7
44
1.79
90444613--90444686
30
2.5
30
86
0
103
18
28
25
27
1.98
90446565--90446620
29
1.9
29
96
0
103
50
23
1
25
1.59
90446829--90446875
25
1.9
24
87
12
69
17
10
2
70
1.26
90446855--90446889
12
3.0
12
87
4
54
28
8
0
62
1.24
90454614--90454646
12
2.8
12
100
0
66
66
0
9
24
1.20
90455553--90455608
10
5.7
9
80
16
58
69
1
5
23
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90455549--90455608
20
3.0
19
87
4
84
70
1
6
21
1.20
90455547--90455606
30
2.0
31
84
15
81
70
1
6
21
1.20
90457257--90457317
10
6.7
9
77
20
56
77
0
1
21
0.86
90457252--90457327
15
5.4
14
79
14
77
77
0
1
21
0.84
90457257--90457325
19
3.7
19
77
12
72
78
0
1
20
0.83
90457264--90457318
5
11.4
5
81
14
71
78
0
1
20
0.85
90462149--90462234
42
2.0
42
97
0
163
24
19
15
40
1.90
90462793--90462826
12
2.8
12
100
0
68
67
0
8
23
1.18
90463736--90463795
10
6.0
10
84
11
79
68
1
8
21
1.25
90465778--90465829
14
3.7
14
92
0
59
38
7
17
36
1.78
90465930--90466002
29
2.6
28
73
4
74
34
5
2
57
1.36
90467214--90467255
21
2.0
21
86
9
59
52
19
0
28
1.46
90469625--90469650
13
2.0
13
100
0
52
46
15
0
38
1.46
90472563--90472644
40
2.0
40
100
0
164
14
19
19
46
1.84
90484072--90484134
31
2.0
31
100
0
126
12
25
36
25
1.91
90485268--90485301
16
2.0
18
88
11
54
41
11
0
47
1.40
90491289--90491449
46
3.5
44
83
7
162
25
29
17
27
1.97
90491372--90491590
94
2.3
93
90
2
350
24
28
20
27
1.99
90493951--90494010
24
2.5
24
94
0
111
33
0
36
30
1.58
90495439--90495549
27
4.1
26
80
9
114
17
24
20
37
1.93
90499239--90499273
16
2.2
16
94
0
61
31
14
17
37
1.89
90504041--90504149
40
2.7
40
84
1
137
33
28
14
23
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90505169--90505193
13
1.9
13
100
0
50
40
4
16
40
1.67
90506341--90506444
43
2.4
43
78
10
106
28
19
22
29
1.98
90506364--90506444
43
1.9
42
84
2
108
27
18
22
32
1.97
90514051--90514168
60
2.0
61
82
1
148
35
19
21
23
1.96
90515813--90516853
519
2.0
519
98
0
2001
36
17
15
31
1.91
90522944--90523119
46
3.8
46
78
10
205
21
19
28
30
1.97
90522941--90523112
93
1.8
93
93
0
299
21
19
29
29
1.98
90530039--90530095
30
1.9
30
85
0
78
43
8
21
26
1.81
90530516--90530691
46
3.8
46
78
12
198
21
19
28
30
1.98
90530513--90530682
93
1.8
93
93
0
295
21
20
28
29
1.98
90559042--90559113
31
2.2
32
82
7
83
33
9
16
40
1.81
90562860--90562910
26
2.0
26
88
0
75
23
13
29
33
1.93
90563303--90563350
22
2.3
20
78
7
51
47
2
10
39
1.49
90567940--90568127
48
3.9
49
76
9
165
27
15
29
27
1.96
90573224--90573488
103
2.6
104
91
0
424
29
30
20
19
1.97
90575029--90575141
42
2.6
42
81
5
120
26
21
25
26
1.99
90582269--90582371
42
2.4
42
80
6
109
28
20
23
28
1.99
90584037--90584078
16
2.7
16
74
3
50
23
11
14
50
1.76
90585906--90585937
15
2.2
15
94
5
57
53
0
0
46
1.00
90585877--90585939
24
2.6
25
78
14
60
47
0
3
49
1.17
90586443--90586478
18
2.1
18
89
5
56
41
0
25
33
1.55
90589968--90590118
48
3.1
48
81
3
178
25
15
29
29
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90589968--90590154
48
3.9
46
76
10
169
25
15
29
29
1.96
90589968--90590141
96
1.8
95
86
6
253
25
16
28
29
1.96
90594970--90595241
40
6.8
40
91
0
436
29
20
27
22
1.98
90603192--90603463
40
6.8
40
91
0
436
29
20
27
22
1.98
90609860--90609915
25
2.2
25
96
3
103
35
12
10
41
1.78
90629445--90629475
15
2.1
15
93
0
53
48
35
0
16
1.46
90632794--90632862
24
2.9
24
93
0
111
36
1
36
26
1.66
90632792--90632885
48
1.9
49
82
6
120
36
4
36
23
1.75
90635528--90635640
27
4.2
26
80
13
120
16
23
23
36
1.94
90635525--90635640
55
2.1
54
85
4
153
16
24
23
36
1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344