Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  144  of  344  ( 41197 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48042217--48042368
54
2.8
54
80
2
171
24
20
30
24
1.98
48044596--48044647
20
2.6
19
88
8
77
42
19
11
26
1.85
48044992--48045057
32
2.0
33
91
2
107
34
21
6
37
1.78
48046481--48046618
53
2.6
53
81
2
150
37
19
21
21
1.94
48052121--48052151
3
10.3
3
100
0
62
32
0
35
32
1.58
48058729--48058839
38
3.1
38
64
19
94
45
6
3
44
1.46
48058678--48058839
68
2.4
68
88
2
227
44
6
5
43
1.54
48058812--48058846
18
1.9
18
88
0
52
51
2
0
45
1.16
48067509--48067534
13
2.0
13
100
0
52
30
15
0
53
1.42
48069993--48070023
11
2.8
11
100
0
62
16
35
19
29
1.93
48073893--48073963
21
3.5
20
82
3
81
47
16
19
15
1.82
48073904--48074013
53
2.1
53
87
0
157
50
15
18
15
1.78
48075513--48075591
24
3.5
22
81
11
88
24
21
21
32
1.98
48076690--48076737
24
2.0
24
95
0
87
29
29
27
14
1.95
48079944--48080000
15
3.9
15
88
2
89
35
0
12
52
1.39
48080398--48080459
21
3.0
21
85
0
79
14
22
27
35
1.93
48081416--48081488
1
73.0
1
97
0
137
1
0
0
98
0.10
48097253--48097283
11
2.8
11
100
0
62
16
35
19
29
1.93
48101040--48101077
20
1.9
20
88
0
58
47
13
23
15
1.81
48101034--48101133
50
2.0
52
84
4
132
52
13
19
16
1.75
48102611--48102689
24
3.5
22
81
11
88
24
21
21
32
1.98
48103784--48103831
24
2.0
24
95
0
87
29
29
27
14
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48107031--48107087
15
3.9
15
88
2
89
35
0
12
52
1.39
48107485--48107546
21
3.0
21
85
0
79
14
22
27
35
1.93
48108645--48108685
15
2.7
15
84
0
55
29
0
14
56
1.39
48121831--48121887
24
2.5
22
76
20
71
24
21
17
36
1.94
48121845--48121910
24
2.7
24
86
6
80
28
22
16
31
1.96
48122404--48122443
18
2.2
18
90
0
71
37
5
27
30
1.78
48128128--48128302
47
3.7
48
80
10
157
27
18
29
24
1.98
48128080--48128253
94
1.9
94
84
4
235
27
18
29
24
1.98
48128128--48128302
94
1.9
95
83
6
230
27
18
29
24
1.98
48131753--48131922
47
3.7
45
82
12
186
28
18
30
22
1.97
48131750--48131922
94
1.8
94
90
2
276
28
18
30
23
1.98
48146830--48147150
94
3.4
94
81
7
346
29
20
28
21
1.98
48146829--48147153
47
6.8
48
74
11
231
29
20
28
21
1.98
48146874--48147149
146
1.9
144
82
5
351
29
20
28
21
1.98
48147355--48147396
22
1.9
22
100
0
84
19
14
16
50
1.79
48153743--48153767
13
1.9
13
100
0
50
16
4
16
64
1.44
48154436--48154756
47
6.7
48
75
13
254
28
20
28
21
1.98
48154436--48154756
94
3.4
95
81
8
332
28
20
28
21
1.98
48154480--48154755
146
1.9
144
82
5
351
28
20
28
21
1.98
48154960--48155001
22
1.9
22
100
0
84
19
14
16
50
1.79
48160637--48160860
101
2.2
101
81
5
274
32
16
23
26
1.96
48161121--48161154
16
2.1
16
88
5
50
52
0
14
32
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48164902--48165205
47
6.4
47
90
1
419
27
29
8
33
1.87
48164905--48164984
25
3.3
24
67
18
67
31
28
5
35
1.79
48168859--48169023
43
3.9
41
68
12
109
33
25
15
25
1.95
48174056--48174265
33
6.2
33
76
9
147
33
15
24
27
1.95
48174089--48174214
68
1.9
66
81
6
155
31
15
26
26
1.95
48174055--48174266
101
2.1
101
92
0
352
33
15
24
27
1.95
48174068--48174313
101
2.5
101
86
4
329
32
15
25
26
1.96
48179322--48179368
14
3.3
14
72
16
51
46
12
0
40
1.42
48182355--48182443
40
2.2
39
82
11
101
30
15
25
28
1.96
48210875--48210943
19
3.7
19
71
9
52
59
2
1
36
1.21
48210858--48210912
19
2.8
20
81
10
60
63
5
0
30
1.17
48211066--48211146
34
2.4
34
75
6
85
29
0
3
66
1.09
48216558--48216608
26
2.0
26
96
0
93
33
23
23
19
1.97
48219333--48219809
48
9.9
48
78
0
434
26
27
16
28
1.97
48219333--48219809
96
5.0
96
84
0
551
26
27
16
28
1.97
48219805--48219900
48
2.0
48
97
0
183
29
19
14
36
1.92
48221365--48221420
25
2.2
25
83
0
67
35
17
25
21
1.95
48222218--48222263
21
2.1
23
84
15
62
67
0
26
6
1.15
48222507--48222550
22
2.0
22
82
8
54
34
6
22
36
1.81
48224764--48224839
26
2.9
25
75
7
71
17
22
22
38
1.93
48224779--48224846
26
2.7
26
83
2
84
17
20
23
38
1.93
48224858--48224903
24
2.0
23
86
4
65
15
19
21
43
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48229230--48229258
15
2.0
15
93
6
51
20
6
3
68
1.27
48229841--48229874
16
2.1
16
88
0
50
58
0
11
29
1.33
48231283--48231334
25
2.1
25
100
0
104
59
11
17
11
1.60
48231538--48231573
18
2.0
18
100
0
72
11
16
16
55
1.68
48232892--48232945
29
2.0
29
86
13
80
48
0
0
51
1.00
48236888--48236912
3
8.3
3
100
0
50
36
0
32
32
1.58
48243208--48243337
49
2.7
49
88
0
188
26
26
19
27
1.99
48243363--48243476
48
2.4
48
92
0
192
24
26
19
29
1.98
48244036--48244074
20
2.0
20
85
10
53
35
20
0
43
1.52
48251935--48252101
37
4.5
37
95
0
289
26
31
17
24
1.97
48252314--48252839
47
10.9
47
85
6
676
26
30
12
30
1.93
48252314--48252839
145
3.6
144
87
6
733
26
30
12
30
1.93
48252314--48252839
98
5.4
94
86
6
676
26
30
12
30
1.93
48255020--48255198
85
2.1
85
96
0
331
25
27
8
37
1.86
48256146--48256357
46
4.6
45
73
15
143
24
30
18
26
1.98
48256183--48256357
46
3.8
45
76
13
162
22
30
19
26
1.98
48256146--48256357
90
2.3
93
80
10
231
24
30
18
26
1.98
48264235--48264292
10
5.8
10
86
8
73
24
6
1
67
1.25
48264239--48264292
20
2.7
19
86
8
81
24
7
1
66
1.27
48265562--48265779
49
4.6
48
75
11
191
26
27
19
26
1.99
48265562--48265779
93
2.3
94
80
9
230
26
27
19
26
1.99
48267127--48267241
49
2.3
49
82
8
128
28
20
25
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48268725--48268845
48
2.6
47
79
11
142
21
23
22
33
1.98
48272017--48272066
26
1.9
26
95
0
91
16
24
12
48
1.79
48280216--48280294
27
2.9
27
80
0
95
20
29
13
36
1.91
48280371--48280533
45
3.7
44
78
9
156
20
23
16
39
1.92
48285294--48285338
22
2.0
22
87
8
65
31
4
26
37
1.76
48288750--48288796
20
2.3
20
96
0
85
27
12
14
44
1.82
48293058--48293606
47
11.6
47
92
1
855
28
29
8
32
1.87
48293058--48293606
239
2.3
239
93
1
926
28
29
8
32
1.87
48293058--48293606
96
5.8
95
89
3
793
28
29
8
32
1.87
48293058--48293606
143
3.8
140
91
2
819
28
29
8
32
1.87
48293815--48293876
31
2.0
31
100
0
124
29
16
19
35
1.93
48298257--48298460
47
4.3
47
94
0
336
28
30
8
32
1.87
48298685--48298776
39
2.3
39
85
5
123
25
28
21
25
1.99
48298666--48298826
40
4.1
40
78
10
143
24
27
21
26
1.99
48309231--48309337
28
3.8
28
89
0
142
35
10
23
30
1.88
48311312--48311466
28
5.5
28
68
3
121
17
20
34
28
1.95
48311340--48311437
29
3.4
29
77
2
126
15
17
37
29
1.90
48311310--48311497
57
3.3
57
91
0
304
18
18
35
28
1.94
48315818--48315919
28
3.6
28
91
0
150
37
10
22
29
1.88
48317887--48318041
28
5.5
28
68
3
112
18
19
34
27
1.95
48317915--48318016
29
3.6
29
75
7
118
17
15
38
28
1.91
48317885--48318071
57
3.2
57
88
3
277
19
17
35
27
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48318245--48318381
46
3.0
46
87
0
193
25
30
8
35
1.86
48318355--48318639
47
6.0
47
88
4
383
26
28
11
33
1.91
48325264--48325316
28
1.9
28
88
3
81
24
24
22
28
2.00
48325291--48325370
34
2.4
34
93
0
133
22
25
26
26
2.00
48337535--48337570
18
2.0
18
88
0
54
69
5
5
19
1.29
48342535--48342598
32
2.0
32
100
0
128
31
21
15
31
1.95
48345806--48345830
13
1.9
13
100
0
50
16
36
24
24
1.94
48346876--48347101
48
4.7
48
80
5
224
23
28
19
29
1.98
48346873--48347107
96
2.4
94
80
5
247
23
28
19
28
1.98
48350777--48350939
45
3.6
44
79
4
146
22
19
13
44
1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344