Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  333  of  344  ( 41197 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108181483--108181627
32
4.5
33
74
5
111
31
16
12
39
1.86
108181513--108181604
31
2.9
33
73
12
93
29
16
11
42
1.84
108182284--108182337
18
2.9
18
81
18
58
57
3
3
35
1.34
108186532--108186576
22
2.0
22
91
0
72
42
20
13
24
1.87
108186684--108186741
27
2.1
27
90
6
91
27
12
0
60
1.32
108205486--108205567
33
2.5
32
81
11
87
29
20
14
35
1.93
108205484--108205693
101
2.1
101
91
1
341
28
25
16
30
1.96
108205441--108205656
33
6.5
31
66
15
78
27
25
15
31
1.96
108206418--108206516
51
1.9
51
97
0
189
27
11
17
44
1.82
108214648--108214684
18
2.1
18
94
0
65
54
2
16
27
1.56
108219217--108219278
33
1.9
32
86
3
88
35
19
9
35
1.85
108224603--108224665
31
2.0
31
96
0
117
47
3
4
44
1.40
108230648--108230680
15
2.1
16
88
5
50
48
9
0
42
1.35
108233059--108233090
16
2.0
16
93
0
55
40
12
3
43
1.58
108246790--108247054
18
14.3
18
70
9
156
36
13
12
36
1.84
108246777--108247054
36
7.5
36
72
9
175
36
14
12
36
1.84
108247217--108247320
45
2.3
45
89
0
163
42
20
19
18
1.90
108248112--108248145
12
2.8
12
95
4
59
55
2
0
41
1.15
108251740--108251799
30
2.0
30
86
0
84
56
13
1
28
1.47
108253823--108253872
26
2.0
24
88
7
73
64
6
0
30
1.18
108253843--108253901
21
2.8
21
78
12
59
69
8
0
22
1.15
108254181--108254259
27
2.7
29
82
9
108
35
5
5
54
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108254673--108254709
3
12.3
3
88
0
56
35
2
0
62
1.10
108262234--108262267
6
5.7
6
100
0
68
35
64
0
0
0.94
108263561--108263612
26
2.0
26
81
7
61
51
0
1
46
1.12
108265189--108265221
6
5.5
6
100
0
66
33
0
48
18
1.48
108265305--108265450
12
12.5
11
68
21
68
50
2
45
2
1.25
108265368--108265450
6
12.8
6
80
14
85
53
1
44
1
1.16
108265324--108265450
27
5.0
24
76
14
105
51
2
44
1
1.24
108265324--108265468
45
3.0
48
75
13
136
51
2
45
1
1.21
108265360--108265451
33
2.8
33
83
3
114
53
1
44
1
1.15
108270886--108271441
184
3.0
180
89
3
792
29
14
24
30
1.95
108273861--108273936
36
2.1
36
87
0
107
10
21
32
35
1.87
108274806--108274885
35
2.3
35
80
10
92
22
10
1
66
1.29
108275989--108276017
13
2.1
14
93
6
51
65
0
0
34
0.93
108285972--108286018
21
2.2
21
88
7
69
25
25
19
29
1.98
108304602--108304683
40
2.0
40
100
0
164
45
2
7
45
1.44
108304609--108304673
20
3.2
20
67
16
62
46
1
7
44
1.41
108311052--108311080
14
2.1
14
100
0
58
48
17
0
34
1.47
108315725--108315765
21
2.0
21
90
0
64
29
21
29
19
1.98
108323166--108323197
11
2.9
11
95
0
55
21
0
34
43
1.53
108325620--108325690
35
2.0
35
100
0
142
16
47
11
23
1.79
108325638--108325717
34
2.3
35
84
2
99
22
50
10
17
1.76
108331458--108331495
6
6.7
6
85
11
53
86
0
10
2
0.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108331457--108331494
11
3.5
11
85
0
58
84
0
13
2
0.73
108331458--108331521
16
4.1
15
76
13
58
84
3
10
1
0.81
108333699--108334173
73
6.5
73
91
2
634
31
17
18
32
1.94
108333699--108335615
145
12.9
144
71
16
1065
29
17
19
33
1.94
108334207--108335221
74
13.5
73
73
14
550
30
17
19
33
1.95
108334432--108334550
59
2.0
60
86
4
170
26
18
23
31
1.97
108334491--108334726
88
2.7
88
83
5
264
28
18
19
33
1.95
108334669--108335221
72
7.4
73
87
7
679
31
17
18
32
1.94
108335363--108335615
73
3.5
72
90
3
382
32
17
18
31
1.94
108336318--108336386
35
2.0
35
97
0
129
18
50
10
20
1.75
108339008--108339141
66
2.0
67
98
1
261
16
20
5
57
1.60
108339988--108340025
17
2.2
17
86
9
51
52
0
5
42
1.24
108346208--108346268
30
2.0
30
96
0
113
24
13
11
50
1.74
108355697--108355730
17
2.0
17
94
0
59
79
5
0
14
0.91
108355697--108355760
17
3.5
19
75
14
55
70
4
0
25
1.06
108355974--108356141
9
18.2
9
66
24
66
33
1
2
61
1.21
108356045--108356130
18
4.8
18
76
13
79
34
0
2
62
1.08
108356061--108356141
19
4.4
19
72
20
73
33
0
2
64
1.07
108361896--108361920
6
4.2
6
100
0
50
20
0
0
80
0.72
108369251--108369323
21
3.5
20
77
18
69
61
1
6
30
1.30
108369266--108369308
15
2.9
15
78
21
54
65
0
4
30
1.13
108369761--108369815
23
2.5
22
75
3
56
58
0
41
0
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108369771--108369821
20
2.6
20
78
9
52
56
0
43
0
0.99
108369777--108369826
18
3.0
17
73
21
52
50
0
50
0
1.00
108369796--108369825
14
2.1
15
93
6
53
50
0
50
0
1.00
108369933--108369978
22
2.1
21
88
4
65
21
4
2
71
1.14
108386855--108386891
18
2.1
18
89
0
56
40
32
18
8
1.80
108387828--108387968
44
3.3
43
77
8
153
29
21
19
29
1.98
108388664--108388746
41
2.0
41
97
0
157
49
12
13
25
1.76
108403481--108403516
15
2.4
15
95
0
63
19
25
13
41
1.88
108407799--108407835
18
2.1
18
100
0
74
56
5
10
27
1.55
108408889--108408938
21
2.3
22
79
10
57
22
22
26
30
1.99
108421400--108421428
13
2.3
13
94
5
51
24
6
0
68
1.13
108434487--108434616
45
2.9
45
88
2
165
23
21
28
26
1.99
108446950--108447041
28
3.3
28
82
0
121
18
42
19
19
1.90
108447994--108448168
47
3.7
47
76
15
164
25
28
15
30
1.96
108448088--108448214
47
2.7
45
79
11
123
25
28
15
30
1.96
108451420--108451520
50
2.0
50
92
0
166
39
30
9
19
1.85
108453325--108453379
24
2.3
24
87
6
76
49
7
1
41
1.41
108468490--108468562
21
3.5
20
77
18
69
61
1
6
30
1.30
108468505--108468547
15
2.9
15
78
21
54
65
0
4
30
1.13
108469680--108469709
15
2.0
15
93
0
51
13
6
36
43
1.70
108470409--108470660
72
3.5
72
90
4
391
31
19
17
32
1.95
108470593--108470837
87
2.8
86
84
6
287
34
19
17
28
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108470803--108471160
130
2.8
124
78
8
362
34
23
15
25
1.95
108471058--108471410
148
2.4
147
84
5
464
34
19
15
30
1.93
108471058--108471392
76
4.5
74
87
5
446
32
20
15
31
1.94
108471410--108471582
68
2.5
70
85
4
219
33
23
14
28
1.94
108482024--108482066
18
2.3
19
88
11
63
62
0
9
27
1.25
108482038--108482078
15
2.6
17
82
17
54
65
0
4
29
1.13
108482544--108482598
19
3.0
18
80
17
60
49
0
50
0
1.00
108482546--108482595
18
3.0
17
73
21
52
50
0
50
0
1.00
108482565--108482594
14
2.1
15
93
6
53
50
0
50
0
1.00
108482701--108482748
22
2.1
23
84
3
62
20
4
2
72
1.11
108488412--108488437
3
8.7
3
100
0
52
65
0
0
34
0.93
108493279--108493310
17
1.9
17
93
6
57
37
0
0
62
0.95
108509215--108509239
13
1.9
13
100
0
50
12
16
8
64
1.49
108512600--108512951
174
2.0
176
94
1
627
33
19
18
28
1.96
108513019--108513672
325
2.0
325
98
0
1254
33
16
17
32
1.92
108520208--108520234
4
6.8
4
100
0
54
51
22
0
25
1.48
108531020--108531059
12
3.3
12
89
0
53
20
0
37
42
1.52
108531020--108531059
18
2.2
18
86
0
53
20
0
37
42
1.52
108536373--108536422
16
3.1
16
77
11
57
14
24
2
60
1.45
108537491--108537534
22
2.0
23
86
13
65
31
4
9
54
1.52
108537532--108537579
16
3.0
15
79
11
51
47
12
14
25
1.79
108537639--108537691
18
3.1
16
78
13
52
45
7
3
43
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108537639--108537676
18
2.2
18
86
9
53
39
7
5
47
1.55
108537513--108537961
17
25.1
17
68
16
144
44
10
11
33
1.75
108537720--108537788
23
3.0
23
87
10
97
39
7
7
46
1.59
108537785--108537838
16
3.2
16
75
14
56
40
9
14
35
1.78
108537767--108537927
35
4.6
32
75
12
115
44
9
14
31
1.77
108537906--108537961
18
3.1
19
76
7
62
41
14
10
33
1.80
108537956--108538006
18
2.9
17
77
8
57
47
7
9
35
1.66
108538500--108538565
7
8.4
8
88
10
84
0
18
0
81
0.68
108538502--108538565
15
4.1
15
91
4
101
0
17
0
82
0.66
108538506--108538575
30
2.3
30
85
4
97
0
18
0
81
0.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344