genome.fa.s10.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  147  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48972894--48973063	40	4.3	40	88	0	225	25	28	21	24	1.99
48976084--48976666	47	12.4	46	88	2	752	32	9	30	27	1.89
48982179--48982330	40	3.8	40	91	1	225	22	28	25	23	1.99
48984749--48984919	93	1.8	93	94	2	308	28	28	21	21	1.98
48984741--48984916	46	3.8	46	80	14	218	29	28	20	21	1.98
49001089--49001227	37	3.8	37	80	8	160	26	17	28	26	1.98
49001200--49001471	48	6.3	41	78	9	172	26	16	27	29	1.97
49001223--49001361	48	2.9	48	94	2	244	28	17	27	26	1.97
49002742--49002768	12	2.2	12	100	0	54	25	14	25	33	1.95
49004733--49004776	21	2.1	21	100	0	88	20	9	27	43	1.82
49005590--49005714	29	4.3	29	91	1	180	24	13	30	31	1.94
49007875--49007932	27	2.2	27	84	3	82	24	20	20	34	1.97
49007886--49007943	27	2.1	27	83	0	71	22	22	20	34	1.97
49013770--49013836	34	2.0	34	96	0	125	32	22	7	37	1.82
49014527--49014553	14	1.9	14	100	0	54	37	11	0	51	1.37
49023465--49023534	36	1.9	36	88	5	106	30	21	28	20	1.98
49023536--49023666	20	6.6	20	84	0	181	16	19	25	38	1.92
49027379--49027489	20	5.6	20	91	0	186	13	17	27	41	1.87
49061423--49061541	60	2.0	60	100	0	238	48	21	15	14	1.80
49062278--49062526	101	2.5	101	82	1	295	30	25	13	30	1.93
49063865--49063934	27	2.6	27	79	4	70	31	21	12	34	1.91
49065775--49065817	13	3.4	13	77	3	52	37	16	9	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49067506--49067600	47	2.0	47	95	0	172	35	8	24	31	1.85
49069258--49069311	18	3.1	17	71	10	54	38	0	0	61	0.96
49071343--49071407	28	2.3	28	89	0	94	33	26	15	24	1.95
49073534--49073569	17	2.1	17	100	0	72	27	16	11	44	1.82
49075475--49075542	29	2.3	29	85	5	93	27	30	13	27	1.94
49075644--49075722	29	2.7	30	82	13	110	29	30	15	25	1.96
49079892--49079952	21	3.0	21	87	2	88	9	37	29	22	1.87
49092171--49092358	40	4.7	40	90	3	281	25	27	22	25	2.00
49095676--49095700	9	2.8	9	100	0	50	56	0	44	0	0.99
49101657--49101705	24	2.0	24	96	0	89	18	28	10	42	1.83
49110499--49110724	50	4.7	50	76	9	200	24	30	18	26	1.98
49110542--49110731	50	3.9	50	77	11	214	24	30	17	27	1.98
49113170--49113255	26	3.3	26	82	7	79	30	22	19	27	1.98
49113191--49113257	26	2.6	26	90	0	107	29	22	20	26	1.99
49113303--49113349	20	2.3	20	100	0	94	34	19	10	36	1.86
49115841--49115906	25	2.6	25	83	4	80	28	24	18	28	1.98
49119965--49120102	64	2.2	64	95	0	249	30	13	30	25	1.94
49123670--49123786	28	4.2	28	82	4	137	27	10	29	32	1.90
49133553--49133591	18	2.2	17	86	4	51	43	0	2	53	1.14
49133898--49133944	22	2.2	21	84	3	58	65	2	2	29	1.15
49134115--49134154	14	2.9	14	80	0	53	55	30	0	15	1.41
49134127--49134178	22	2.4	22	90	0	77	50	34	1	13	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49138656--49138932	95	2.9	97	82	5	312	25	28	19	27	1.99
49138662--49138962	143	2.1	146	86	5	425	25	28	18	26	1.98
49138659--49138934	48	5.7	48	81	5	299	25	28	18	27	1.98
49146331--49146602	48	5.7	48	75	2	215	26	27	18	28	1.98
49146339--49146600	144	1.8	144	85	0	371	25	26	18	29	1.98
49152709--49152759	22	2.3	22	83	6	68	25	9	27	37	1.87
49155258--49155485	68	3.5	64	78	11	176	23	29	16	29	1.96
49161790--49161950	45	3.5	44	74	11	119	23	26	15	34	1.95
49161925--49162054	47	2.8	43	80	11	125	25	30	16	26	1.97
49174051--49174165	37	3.1	37	92	0	185	26	31	20	20	1.98
49174368--49174441	23	3.2	22	67	27	55	25	32	12	29	1.92
49174328--49174868	47	11.5	47	90	0	812	26	29	12	31	1.92
49177435--49177502	33	2.1	33	97	0	127	32	30	5	30	1.81
49179418--49179472	18	3.2	17	80	10	67	3	36	0	60	1.15
49184508--49184559	23	2.3	22	75	21	54	9	23	1	65	1.32
49184553--49184591	18	2.2	18	85	0	51	12	23	2	61	1.43
49191701--49191774	29	2.6	29	89	4	105	25	16	32	25	1.96
49194386--49194515	45	2.9	45	88	0	197	27	27	21	23	1.99
49196409--49196434	13	2.0	13	100	0	52	69	7	15	7	1.35
49198076--49198138	29	2.2	29	94	0	108	12	23	44	19	1.85
49198475--49198657	48	3.8	48	87	2	217	27	30	19	22	1.98
49198523--49198658	48	2.8	48	94	0	236	30	30	16	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49199922--49199967	20	2.3	20	80	0	56	15	30	34	19	1.93
49207700--49207757	29	2.0	29	96	0	107	44	6	15	32	1.73
49211359--49211419	27	2.3	27	82	0	68	31	29	6	32	1.83
49211370--49211527	54	2.9	54	80	0	165	31	20	6	41	1.78
49211370--49211552	27	6.8	27	83	1	134	32	20	7	40	1.79
49211504--49211836	27	12.3	27	77	4	242	38	20	9	31	1.85
49211518--49211724	80	2.6	81	82	3	231	40	21	9	29	1.84
49212652--49212682	16	1.9	16	93	0	53	29	19	16	35	1.93
49212713--49212803	25	3.7	25	88	1	121	27	23	23	26	2.00
49212712--49212819	25	4.4	24	81	5	110	29	20	22	27	1.98
49215257--49215469	27	7.9	27	82	4	146	32	23	7	37	1.82
49215257--49215467	54	3.9	54	76	2	183	31	23	7	37	1.82
49215432--49215637	27	7.7	27	80	7	197	41	21	8	28	1.83
49215421--49215653	54	4.4	54	76	8	208	40	21	8	29	1.83
49215432--49215637	80	2.5	80	82	6	238	41	21	8	28	1.83
49215675--49215726	27	1.9	27	88	7	79	40	13	11	34	1.81
49215767--49215844	27	2.9	27	74	11	79	35	20	20	23	1.96
49216302--49216341	18	2.2	18	100	0	80	15	17	37	30	1.90
49216654--49216760	25	4.4	25	87	5	139	27	20	23	28	1.99
49219296--49219356	27	2.3	27	85	0	77	31	29	6	32	1.83
49219307--49219462	27	5.8	27	83	1	143	28	23	7	41	1.82
49219527--49219570	22	2.0	22	86	0	61	36	6	18	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49219455--49219627	27	6.6	27	74	10	101	41	17	10	30	1.83
49219552--49219656	27	3.9	26	78	5	93	40	20	9	30	1.84
49219663--49219718	27	2.1	26	83	9	69	39	10	12	37	1.78
49219772--49219836	27	2.4	27	82	5	78	35	18	24	21	1.96
49220667--49220724	24	2.4	25	77	11	68	29	18	24	27	1.98
49220930--49221006	31	2.5	31	91	0	127	31	18	23	27	1.97
49224394--49224565	93	1.8	93	95	2	310	28	29	20	20	1.98
49224387--49224562	46	3.8	46	79	14	209	29	29	20	20	1.98
49226242--49226612	27	13.7	27	88	0	499	30	22	7	40	1.80
49226510--49226676	27	6.2	27	79	2	104	34	21	8	35	1.84
49226661--49226825	27	6.1	27	90	2	260	36	18	20	24	1.94
49226634--49226811	54	3.3	54	82	10	204	38	20	17	23	1.93
49226634--49226818	81	2.3	79	83	10	223	37	20	18	23	1.94
49226661--49226898	54	4.6	54	82	11	255	36	18	20	24	1.95
49226781--49226871	46	2.0	46	95	0	164	37	23	19	19	1.94
49226661--49226898	100	2.3	100	83	7	273	36	18	20	24	1.95
49227105--49227199	25	3.8	25	88	0	127	27	22	22	28	1.99
49227149--49227226	25	3.2	24	80	14	79	28	21	21	28	1.99
49227431--49227514	29	2.9	29	77	15	84	29	19	23	27	1.98
49230147--49230324	27	6.6	26	81	8	153	28	15	26	29	1.96
49230144--49230324	82	2.2	81	82	2	220	28	15	26	29	1.96
49230229--49230335	27	3.9	27	82	1	70	28	14	26	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49249204--49249244	22	2.0	21	90	9	66	24	14	24	36	1.93
49251051--49251189	27	5.1	28	84	9	164	34	24	23	17	1.96
49252772--49252879	26	4.2	26	90	0	171	36	23	8	32	1.84
49259036--49259173	27	5.1	27	85	5	181	35	22	24	17	1.95
49259042--49259173	54	2.4	54	92	0	219	34	22	25	17	1.96
49262097--49262272	27	6.5	27	83	3	192	26	15	27	30	1.96
49262097--49262251	82	1.9	81	86	4	222	27	15	27	30	1.96
49262092--49262272	82	2.2	81	81	2	211	27	15	26	30	1.96
49272957--49273052	43	2.2	43	81	3	113	34	16	21	27	1.95
49281589--49281692	49	2.2	45	79	12	127	33	21	17	27	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344