genome.fa.s10.2.7.7.80.10.50.1000.318.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  318  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104399715--104399880	39	4.5	37	82	12	175	26	18	28	26	1.98
104401660--104401747	44	2.0	44	84	4	115	38	9	19	32	1.83
104406233--104406328	22	4.5	22	64	19	58	26	4	2	67	1.19
104406107--104406322	64	3.4	64	87	4	328	27	5	2	64	1.28
104406170--104406345	15	11.3	15	67	21	85	27	4	1	67	1.17
104406239--104406403	88	1.9	88	82	11	205	27	6	2	63	1.32
104408459--104408980	125	4.2	124	88	2	744	32	22	17	28	1.96
104409013--104409051	16	2.4	16	82	0	51	53	28	0	17	1.44
104409707--104409787	30	2.7	29	79	11	74	35	8	9	45	1.68
104409926--104410005	29	2.7	30	80	7	83	50	12	3	33	1.58
104409930--104410005	30	2.5	29	80	6	80	48	13	3	34	1.60
104421068--104421148	36	2.2	36	77	2	90	37	14	20	27	1.92
104426877--104426924	20	2.5	20	86	3	62	50	0	2	47	1.12
104453446--104453653	40	5.3	38	90	5	265	24	21	28	25	1.99
104453393--104453653	78	3.3	78	85	5	312	24	21	27	26	1.99
104453393--104453653	118	2.2	120	82	4	316	24	21	27	26	1.99
104453394--104453688	118	2.5	117	80	6	292	25	21	28	25	1.99
104461081--104461345	40	6.7	40	84	6	297	26	21	27	25	1.99
104463507--104463674	27	6.2	27	85	8	200	19	23	22	35	1.96
104463505--104463652	54	2.7	54	93	2	244	16	25	22	35	1.94
104463507--104463674	81	2.1	81	86	4	232	19	23	22	35	1.96
104463507--104463674	54	3.1	54	90	3	241	19	23	22	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104465641--104465689	24	1.9	27	88	12	77	73	2	10	14	1.18
104466571--104466608	17	2.2	17	86	9	51	13	7	42	36	1.73
104466938--104467573	44	13.8	44	66	13	210	29	21	17	31	1.96
104467280--104467492	91	2.4	89	78	7	227	27	19	18	34	1.95
104467419--104467653	94	2.5	94	85	0	317	28	22	18	30	1.97
104467717--104467805	46	1.9	45	84	8	117	28	25	14	31	1.95
104472354--104472382	12	2.3	13	94	5	51	79	3	0	17	0.87
104475682--104475748	29	2.3	29	80	17	77	49	4	0	46	1.22
104476003--104476037	17	2.0	18	88	5	54	25	0	5	68	1.11
104476392--104476487	48	2.0	48	95	0	174	20	20	16	41	1.90
104481092--104481132	21	1.9	22	85	14	59	12	4	12	70	1.31
104482072--104482108	20	1.9	18	89	10	56	43	0	21	35	1.53
104482665--104482840	46	3.8	46	78	10	196	21	19	28	30	1.98
104482662--104482832	93	1.8	93	91	0	279	21	20	29	29	1.98
104485895--104485943	20	2.5	20	100	0	98	34	10	8	46	1.67
104488056--104488116	20	3.2	20	79	9	65	50	3	0	45	1.17
104488603--104488687	34	2.5	35	72	14	88	34	0	5	60	1.21
104493847--104493885	20	2.1	17	86	13	51	38	0	0	61	0.96
104494905--104494938	17	2.0	17	94	0	59	82	0	2	14	0.79
104497523--104497963	94	4.8	92	77	5	343	30	12	16	40	1.86
104498386--104498628	134	1.8	131	81	9	305	33	17	16	32	1.92
104508838--104508879	18	2.5	18	81	11	54	33	0	4	61	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104509054--104509093	20	2.0	20	95	0	71	42	10	17	30	1.82
104511356--104511459	33	3.2	32	79	5	118	30	24	15	29	1.95
104511473--104511589	33	3.5	33	91	0	171	26	18	14	40	1.89
104512221--104512261	20	2.0	22	85	9	59	29	24	0	46	1.53
104512288--104512353	31	2.1	31	100	0	132	27	15	3	54	1.55
104512654--104512692	16	2.4	16	88	12	62	33	12	0	53	1.39
104512750--104512775	13	2.0	13	100	0	52	46	7	7	38	1.61
104514036--104514066	3	10.0	3	93	6	53	3	64	0	32	1.09
104516819--104516851	16	2.1	16	100	0	66	33	12	12	42	1.79
104519838--104519906	26	2.9	23	79	12	68	47	0	1	50	1.09
104519874--104519898	13	1.9	13	100	0	50	52	0	0	48	1.00
104520784--104520846	31	2.0	31	82	11	76	38	11	7	42	1.70
104523368--104523439	35	2.1	35	89	0	108	36	12	23	27	1.91
104533447--104533531	43	2.0	43	100	0	170	37	4	14	43	1.66
104538352--104538389	9	4.2	9	80	12	51	55	0	2	42	1.14
104540746--104540824	31	2.6	30	75	16	83	40	12	11	35	1.79
104546417--104546474	30	1.9	30	89	0	89	41	3	24	31	1.71
104546686--104546717	13	2.5	13	94	0	55	31	0	12	56	1.37
104548805--104548841	18	2.0	19	89	5	58	13	8	5	72	1.24
104552160--104552203	19	2.3	20	84	7	56	27	20	11	40	1.86
104556915--104556950	17	2.1	17	89	0	54	83	0	11	5	0.80
104557845--104558747	44	19.9	44	71	10	374	33	17	20	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104557940--104558374	89	4.8	89	77	4	280	34	18	19	28	1.95
104557935--104558384	133	3.3	133	81	4	524	34	18	18	28	1.95
104558118--104558247	46	2.7	49	85	4	167	38	17	16	26	1.92
104558580--104558746	43	3.8	43	80	2	181	27	14	26	31	1.95
104561671--104561699	14	2.1	14	100	0	58	0	6	13	79	0.93
104561742--104561791	19	2.6	18	79	20	57	24	8	0	68	1.16
104563584--104563637	26	2.2	25	83	6	65	5	16	1	75	1.07
104565126--104565190	21	3.1	21	95	0	112	23	20	26	30	1.98
104574519--104574594	31	2.4	32	93	4	136	2	32	6	57	1.38
104581463--104581541	32	2.5	32	91	2	124	2	31	5	60	1.31
104584043--104584068	3	8.7	3	100	0	52	65	0	0	34	0.93
104586789--104586818	13	2.3	13	94	0	51	50	6	13	30	1.67
104588378--104588412	18	2.0	18	94	5	63	42	0	0	57	0.99
104588385--104588430	18	2.8	17	83	9	51	45	0	0	54	0.99
104588397--104588453	26	2.2	25	81	3	69	40	0	3	56	1.17
104588301--104588607	120	2.6	119	94	2	526	41	1	4	52	1.33
104588498--104588662	22	8.0	21	67	20	82	41	1	2	54	1.21
104588500--104588534	17	2.1	17	100	0	70	34	0	0	65	0.93
104588525--104588582	13	4.3	13	79	16	64	41	1	0	56	1.09
104588446--104588637	60	3.2	58	71	18	162	42	1	3	53	1.26
104588788--104588878	45	2.0	44	85	2	119	35	28	5	30	1.80
104588857--104588926	16	4.4	16	90	0	113	31	35	1	31	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104597309--104597334	13	2.0	13	100	0	52	23	30	30	15	1.95
104597392--104597474	31	2.7	31	98	0	157	16	34	37	10	1.84
104599075--104599120	22	2.1	22	91	0	74	21	19	28	30	1.98
104603523--104603768	41	6.0	41	86	2	307	30	21	25	22	1.99
104603524--104603768	82	3.0	82	87	1	339	29	22	25	22	1.99
104603806--104603840	15	2.4	14	90	4	52	20	0	34	45	1.51
104603801--104603959	7	21.7	7	70	12	88	20	1	36	42	1.60
104604574--104604617	16	2.8	16	80	16	56	72	2	0	25	0.96
104604609--104604636	14	2.0	14	100	0	56	50	0	0	50	1.00
104608333--104608386	28	2.0	28	82	10	67	27	5	3	62	1.34
104608399--104608501	43	2.4	43	85	0	125	21	17	28	33	1.96
104611172--104611213	12	3.5	12	90	0	57	35	7	2	54	1.41
104611336--104611361	3	8.7	3	100	0	52	65	0	0	34	0.93
104611880--104611943	32	2.0	32	100	0	128	31	25	12	31	1.92
104612344--104612420	19	4.2	19	68	6	59	45	0	2	51	1.14
104620022--104620078	23	2.4	25	88	5	82	57	0	0	42	0.98
104620049--104620159	26	4.2	27	72	18	74	54	1	0	43	1.17
104620098--104620159	27	2.3	26	83	8	72	51	3	1	43	1.27
104625475--104625529	20	2.7	20	75	13	58	36	7	12	43	1.71
104647681--104647788	26	4.2	26	93	0	189	32	7	24	36	1.83
104649371--104649498	27	4.7	28	83	10	176	19	22	22	35	1.96
104649367--104649525	54	2.9	54	87	4	223	19	22	22	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104649371--104649528	27	5.9	27	79	10	171	19	22	22	35	1.96
104649371--104649528	81	2.0	80	82	6	194	19	22	22	35	1.96
104651194--104651248	25	2.3	25	75	6	60	20	5	21	52	1.66
104651354--104651423	36	1.9	36	88	5	106	41	8	8	41	1.66
104652612--104652667	25	2.2	25	84	6	69	60	25	12	1	1.42
104652621--104652675	20	2.8	20	78	10	58	61	25	10	1	1.39
104662966--104662991	13	2.0	13	100	0	52	15	38	30	15	1.88
104666378--104666406	13	2.1	14	93	6	51	55	10	0	34	1.34
104668915--104669402	244	2.0	244	99	0	967	39	15	20	24	1.91
104672201--104672269	29	2.4	30	78	11	81	44	31	0	23	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344