genome.fa.s10.2.7.7.80.10.50.1000.278.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  278  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93308164--93308237	37	2.0	37	94	0	130	29	24	14	31	1.95
93310630--93310695	31	2.1	31	94	0	114	22	34	27	15	1.94
93315693--93315724	14	2.4	14	90	10	50	21	9	28	40	1.84
93315690--93315927	51	4.7	51	79	1	199	26	16	25	31	1.96
93317846--93317895	21	2.4	21	96	0	91	24	22	46	8	1.78
93321930--93322128	55	3.6	55	77	4	204	29	21	14	34	1.93
93335721--93335843	55	2.2	55	76	0	129	27	21	26	24	1.99
93339938--93340113	50	3.5	49	83	7	203	28	27	18	25	1.98
93339938--93340124	101	1.9	99	87	4	277	27	28	18	25	1.98
93344287--93344342	27	2.1	27	100	0	112	30	17	12	39	1.87
93349676--93349826	43	3.5	42	78	6	151	27	13	25	33	1.93
93351559--93351622	31	2.1	31	87	0	92	26	23	14	35	1.93
93351834--93351958	24	5.2	24	88	6	191	28	20	20	31	1.97
93352012--93352054	20	2.2	20	100	0	86	32	18	11	37	1.87
93352091--93352138	25	1.9	25	91	0	78	25	14	25	35	1.94
93354922--93355158	108	2.2	108	95	0	420	19	19	35	25	1.95
93361398--93361486	27	3.3	26	71	11	74	24	20	16	38	1.93
93375200--93375338	57	2.4	58	78	14	146	29	13	20	35	1.91
93380177--93380215	20	1.9	20	84	5	51	43	7	17	30	1.77
93392527--93392552	13	2.0	13	100	0	52	30	0	7	61	1.24
93394898--93394975	23	3.2	25	60	23	58	28	10	29	32	1.90
93395111--93395232	22	5.3	22	65	30	67	34	13	27	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93394850--93395235	47	8.2	47	92	0	592	33	11	28	26	1.91
93395249--93395339	46	2.0	46	86	0	128	34	6	31	27	1.83
93397606--93397650	23	1.9	24	86	4	65	20	2	51	26	1.59
93402165--93402388	39	5.7	40	83	9	248	25	27	21	25	1.99
93402165--93402388	79	2.8	78	81	9	256	25	27	21	25	1.99
93418385--93418435	24	2.1	25	88	3	77	37	31	13	17	1.89
93418809--93418875	33	2.0	33	94	0	116	38	16	7	37	1.77
93419695--93419729	18	1.9	18	88	0	52	28	0	0	71	0.86
93420899--93420984	27	3.2	26	80	8	93	37	18	22	22	1.94
93434204--93434257	27	2.0	27	82	7	65	44	5	1	48	1.37
93444492--93444670	27	6.6	27	92	1	268	30	28	14	26	1.95
93444492--93444669	82	2.2	82	89	2	268	30	28	14	25	1.95
93445169--93445211	22	2.0	21	82	8	52	25	18	2	53	1.56
93452640--93452791	27	5.6	27	91	2	232	30	28	14	26	1.95
93452640--93452791	55	2.8	54	89	2	232	30	28	14	26	1.95
93452640--93452791	82	1.9	82	91	0	250	30	28	14	26	1.95
93454907--93454959	28	1.9	27	85	11	72	20	11	5	62	1.49
93459444--93459501	30	1.9	30	96	0	107	39	20	12	27	1.88
93461942--93462117	47	3.7	47	78	11	182	28	18	28	23	1.98
93465834--93465976	60	2.3	63	75	14	138	26	25	20	27	1.99
93485173--93485260	27	3.3	27	80	4	106	29	13	17	39	1.88
93485185--93485589	54	7.5	53	77	9	345	31	9	19	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93485185--93485590	27	15.0	27	74	10	269	31	9	19	39	1.83
93485214--93485589	81	4.6	79	80	7	355	31	9	19	39	1.83
93485186--93485589	107	3.7	106	82	6	438	31	9	19	39	1.84
93485173--93485587	134	3.1	134	81	6	437	31	10	19	39	1.84
93493177--93493257	24	3.3	26	84	10	91	29	22	24	23	1.99
93493201--93493257	24	2.3	25	90	6	98	31	19	28	21	1.97
93498504--93498533	15	2.0	15	93	0	51	46	6	10	36	1.64
93500504--93500560	27	2.1	27	87	3	80	50	5	5	38	1.47
93501984--93502030	24	2.0	24	91	8	78	51	2	2	44	1.25
93505001--93505038	16	2.4	16	95	0	67	42	15	7	34	1.76
93518924--93519108	40	4.7	40	83	3	196	27	26	23	23	2.00
93521884--93522120	40	5.9	40	88	2	332	26	20	27	25	1.99
93538872--93539101	40	5.8	40	87	4	286	26	20	28	24	1.99
93538876--93539101	120	1.9	120	86	3	321	26	19	28	24	1.99
93547400--93547636	40	5.9	40	89	2	332	25	20	27	26	1.99
93555783--93555887	8	11.7	9	71	17	51	60	0	1	36	1.14
93555775--93555899	26	5.1	26	64	20	63	61	0	2	35	1.15
93556864--93556971	26	4.2	26	92	0	180	32	8	24	35	1.85
93558730--93559015	137	2.1	137	95	0	509	25	19	23	31	1.98
93560235--93560262	12	2.3	12	100	0	56	10	21	53	14	1.70
93565046--93565153	26	4.2	26	92	0	180	32	6	24	37	1.81
93566621--93566673	26	2.0	26	85	7	72	37	22	15	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93566924--93567207	137	2.1	137	91	1	462	25	18	23	32	1.97
93570698--93570732	18	1.9	18	88	0	52	45	2	2	48	1.32
93571955--93571993	17	2.3	16	86	8	51	20	2	0	76	0.90
93571955--93571993	18	2.2	18	86	13	55	20	2	0	76	0.90
93573860--93574086	7	31.4	7	91	4	346	45	40	0	14	1.44
93573860--93574083	72	3.1	72	94	1	387	46	39	0	14	1.44
93574451--93574587	51	2.7	51	79	0	175	40	13	6	39	1.71
93584508--93584544	18	2.1	18	89	0	56	45	21	8	24	1.78
93585817--93585913	39	2.5	38	73	8	97	36	36	12	15	1.85
93586238--93586288	18	2.8	18	79	5	50	17	41	27	13	1.87
93588428--93588475	20	2.3	22	79	13	57	25	8	4	62	1.41
93591895--93591966	37	1.9	37	94	0	126	26	15	19	38	1.91
93593595--93593646	21	2.5	21	93	0	86	48	19	11	21	1.80
93605840--93605891	19	2.9	17	75	10	59	25	15	13	46	1.82
93605918--93605974	24	2.4	24	79	5	62	50	8	1	38	1.44
93606186--93606213	13	2.2	13	100	0	56	21	14	0	64	1.29
93606717--93606754	19	2.0	20	94	5	69	52	0	26	21	1.47
93611616--93611673	24	2.6	21	80	15	71	25	18	20	34	1.96
93611627--93611674	24	2.0	24	95	0	87	27	16	18	37	1.92
93616324--93616363	21	2.0	20	90	5	62	17	22	35	25	1.95
93623455--93623494	21	2.0	20	90	5	62	17	22	35	25	1.95
93628872--93629039	43	4.0	42	76	10	153	32	27	17	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93629851--93629883	4	8.2	4	100	0	66	0	24	0	75	0.80
93630605--93630700	43	2.2	43	100	0	192	42	14	8	34	1.76
93630696--93630748	5	10.6	5	83	0	52	33	5	5	54	1.47
93630701--93630749	25	2.0	25	83	0	62	32	6	8	53	1.55
93634941--93635052	43	2.7	41	79	8	109	23	16	25	34	1.95
93634968--93635052	41	2.0	43	84	4	111	22	15	27	35	1.94
93635171--93635211	19	2.2	19	100	0	82	29	4	29	36	1.78
93637868--93637907	20	1.9	20	85	10	53	35	2	7	55	1.42
93638665--93638735	9	7.9	9	87	0	70	66	19	1	12	1.32
93638680--93638720	3	13.7	3	89	0	64	65	29	2	2	1.18
93639738--93639778	6	7.0	6	83	5	57	78	0	4	17	0.93
93640414--93640585	44	3.9	44	83	1	193	28	20	19	31	1.97
93640792--93640910	44	2.7	45	77	12	145	31	23	15	30	1.95
93658839--93658875	16	2.2	17	90	4	58	72	0	0	27	0.84
93659747--93659784	20	2.0	20	89	5	60	50	0	7	42	1.31
93665605--93665718	41	2.8	41	90	0	165	46	7	23	22	1.76
93665605--93665735	41	3.2	41	86	2	120	48	7	22	20	1.74
93667523--93667561	19	2.1	19	85	4	53	25	15	5	53	1.62
93668838--93668885	22	2.2	22	92	0	78	56	2	0	41	1.11
93669284--93669357	16	4.6	16	78	9	71	41	4	28	25	1.73
93669288--93669366	32	2.5	32	79	8	97	39	3	29	27	1.74
93672397--93672429	15	2.2	15	100	0	66	6	27	0	66	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93683585--93683610	12	2.2	12	100	0	52	50	34	0	15	1.45
93692225--93692272	25	1.9	25	86	0	69	33	20	16	29	1.95
93692404--93692539	26	5.3	26	88	5	199	28	21	23	26	1.99
93699442--93699523	43	1.9	43	92	0	137	25	12	26	35	1.91
93699444--93699610	43	3.9	43	75	8	126	30	11	22	34	1.91
93703667--93703699	17	1.9	17	93	0	57	27	3	30	39	1.72
93714550--93714594	21	2.2	21	92	4	74	37	4	17	40	1.70
93724561--93724604	22	2.0	22	82	8	54	38	13	18	29	1.89
93724831--93725052	40	5.6	40	91	1	340	28	26	22	22	1.99
93728270--93728446	96	1.8	96	81	9	218	27	22	27	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344