genome.fa.s10.2.7.7.80.10.50.1000.301.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  301  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99841117--99841244	63	2.0	63	81	6	150	33	24	20	21	1.97
99846099--99846149	25	2.1	24	82	10	59	41	25	19	13	1.88
99848281--99848305	5	5.0	5	100	0	50	80	0	0	20	0.72
99849051--99849091	22	1.9	21	85	5	55	17	19	2	60	1.46
99855163--99855234	9	8.2	9	77	9	69	36	0	16	47	1.47
99855167--99855241	34	2.2	34	85	4	98	34	0	16	49	1.46
99855367--99855527	9	17.9	9	67	21	88	39	2	14	44	1.58
99855405--99855453	16	3.1	15	91	5	71	34	2	18	44	1.61
99855635--99856103	99	4.7	98	88	9	694	50	4	6	38	1.47
99855917--99856103	62	3.2	60	71	20	171	53	3	5	36	1.43
99855982--99856014	14	2.4	14	95	5	59	60	6	0	33	1.21
99855883--99856099	112	1.9	113	90	2	348	50	4	6	38	1.47
99859074--99859099	12	2.2	12	100	0	52	50	23	7	19	1.73
99860756--99860984	80	2.8	80	84	3	255	25	22	13	38	1.90
99860806--99860992	80	2.3	82	86	7	265	27	20	13	37	1.90
99861344--99861396	28	1.9	27	85	11	72	45	22	3	28	1.70
99862001--99862085	40	2.1	40	88	0	125	23	20	20	36	1.95
99862274--99862405	41	3.2	41	90	2	185	17	25	21	36	1.94
99864821--99864855	18	1.9	19	88	11	56	22	8	0	68	1.16
99865981--99866009	14	2.1	14	100	0	58	27	13	17	41	1.87
99866498--99866726	116	2.0	116	96	0	422	36	26	12	25	1.91
99875646--99875701	28	2.0	28	89	0	85	39	8	28	23	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99878873--99878904	16	2.0	16	93	0	55	40	0	18	40	1.51
99883706--99883807	45	2.2	47	85	5	136	38	20	22	18	1.94
99889463--99889497	18	2.0	17	88	5	52	65	0	5	28	1.15
99889651--99889715	29	2.2	30	83	5	78	49	7	1	41	1.41
99892019--99892061	21	2.0	22	82	8	54	25	0	23	51	1.49
99893077--99893142	33	2.0	33	96	0	123	33	6	16	43	1.73
99896779--99896817	20	2.0	20	85	5	53	35	0	2	61	1.10
99898376--99898418	18	2.4	18	88	0	59	23	25	9	41	1.84
99902944--99902982	18	2.2	18	86	9	53	38	12	0	48	1.42
99908382--99908408	13	2.1	13	100	0	54	29	14	14	40	1.86
99911533--99911566	4	8.2	4	87	6	50	73	0	2	23	0.97
99913627--99914268	125	5.1	126	84	3	807	28	16	15	39	1.89
99913629--99914268	249	2.6	251	84	4	846	28	16	15	39	1.89
99914353--99914485	34	4.0	33	77	8	110	43	15	0	40	1.47
99914452--99914509	28	2.1	27	83	3	71	44	15	0	39	1.47
99926349--99926387	6	6.5	6	94	5	62	0	12	0	87	0.55
99931583--99931627	18	2.5	18	85	7	65	22	46	20	11	1.81
99937102--99937147	23	2.0	23	84	12	60	45	10	6	36	1.65
99937109--99937153	23	2.0	23	82	8	56	40	13	8	37	1.76
99947126--99947161	15	2.4	16	90	9	58	41	27	11	19	1.85
99951379--99951412	16	2.1	16	94	0	59	67	0	32	0	0.91
99959681--99959825	68	2.1	71	83	7	181	51	4	2	40	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99964494--99964530	18	2.1	17	90	5	56	40	13	2	43	1.58
99973209--99973238	15	2.0	15	93	0	51	43	13	20	23	1.86
99973875--99973909	5	7.2	5	90	6	54	62	0	0	37	0.95
99974595--99974620	12	2.2	12	100	0	52	7	15	30	46	1.74
99974651--99974811	41	3.9	41	84	4	209	30	22	23	22	1.99
99974651--99974811	82	2.0	82	87	4	236	30	22	23	22	1.99
99975374--99975422	24	2.0	24	96	0	89	51	0	4	44	1.20
99975870--99975924	20	2.6	22	75	18	55	70	3	0	25	1.03
99975907--99975932	7	3.7	7	100	0	52	88	0	0	11	0.52
99977943--99977988	21	2.2	21	84	0	56	45	2	21	30	1.64
99980487--99980543	28	1.9	31	82	10	75	29	3	5	61	1.35
99980589--99980747	42	3.8	42	87	2	203	23	14	30	30	1.94
99982408--99982462	28	1.9	29	81	3	67	36	14	21	27	1.93
99986101--99986134	15	2.3	15	85	5	52	70	0	2	26	1.01
99988243--99988311	21	3.4	19	72	21	59	62	2	0	34	1.10
99988244--99988311	20	3.2	21	74	16	68	63	2	0	33	1.10
99988244--99988311	22	3.2	20	76	14	66	63	2	0	33	1.10
99988454--99988491	10	3.8	10	93	6	60	60	5	2	31	1.33
99988438--99988520	37	2.2	39	81	14	102	61	4	3	30	1.34
99988523--99988568	19	2.4	20	79	17	53	39	0	2	58	1.10
99989954--99989998	20	2.3	20	85	11	58	57	4	0	37	1.19
99990451--99990491	22	1.9	22	85	5	57	31	0	4	63	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99990905--99990942	18	2.1	18	95	0	67	42	47	2	7	1.46
99990919--99990943	13	1.9	13	100	0	50	40	48	0	12	1.40
99990968--99991008	6	6.5	6	83	10	55	78	4	0	17	0.93
99990971--99991010	20	2.0	20	90	0	62	75	7	0	17	1.03
99991028--99991070	9	4.8	9	88	0	68	25	9	18	46	1.79
99991028--99991095	18	3.8	18	75	7	66	27	7	14	50	1.70
99991028--99991083	27	2.1	27	83	6	69	28	8	16	46	1.77
99992377--99992646	47	5.5	46	80	11	200	31	28	15	24	1.95
99992377--99992637	54	5.2	51	85	5	238	32	28	14	24	1.95
99996528--99996654	26	4.9	26	80	5	89	18	15	31	33	1.93
99996565--99996680	52	2.2	52	85	0	151	20	13	26	38	1.90
99996565--99996686	26	4.7	26	85	0	136	20	13	27	39	1.89
99996592--99996700	52	2.1	52	84	0	137	22	13	24	39	1.90
99997824--99997912	29	3.1	29	81	1	99	22	30	21	25	1.99
100005144--100005280	48	2.9	47	83	4	166	36	28	16	18	1.93
100005843--100005881	21	1.9	20	89	5	60	46	20	0	33	1.51
100017787--100017820	17	2.0	17	88	0	50	29	29	11	29	1.92
100018901--100018930	8	3.6	8	91	8	51	26	0	33	40	1.57
100033076--100033131	26	2.3	25	79	11	62	46	3	1	48	1.30
100035705--100035730	13	2.0	13	100	0	52	15	0	23	61	1.33
100054356--100054388	18	1.9	18	88	11	52	33	0	12	54	1.37
100055255--100055309	27	2.0	27	96	0	101	60	0	7	32	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100057069--100057093	9	2.8	9	100	0	50	92	0	8	0	0.40
100058332--100058394	29	2.1	29	85	11	83	23	14	20	41	1.89
100073201--100073258	30	1.9	31	85	3	82	51	0	5	43	1.24
100075326--100075383	28	2.1	28	100	0	116	36	20	22	20	1.95
100075804--100075859	28	2.0	28	96	0	103	51	10	3	33	1.54
100076508--100076541	17	2.0	17	88	0	50	58	0	0	41	0.98
100076688--100076735	25	1.9	25	86	0	69	39	6	16	37	1.74
100085339--100085368	9	3.2	9	90	9	51	66	0	0	33	0.92
100086276--100086342	16	4.2	16	82	0	80	43	1	25	29	1.64
100086323--100086412	44	2.0	44	80	8	101	31	6	22	40	1.80
100090252--100090281	15	2.0	15	93	0	51	50	0	10	40	1.36
100096671--100096714	23	1.9	23	86	9	63	13	11	0	75	1.06
100097680--100097892	118	1.8	118	91	0	354	23	16	30	29	1.96
100098670--100098699	15	2.0	15	93	0	51	50	0	10	40	1.36
100102314--100102467	43	3.6	42	78	9	118	31	25	15	27	1.96
100102599--100102668	35	2.0	35	83	5	88	48	12	5	32	1.65
100110966--100111016	21	2.4	22	81	18	63	25	3	3	66	1.26
100111064--100111113	24	2.1	24	84	0	64	22	4	2	72	1.12
100111270--100111307	12	3.1	13	92	7	62	26	5	0	68	1.11
100111557--100111599	23	1.9	22	86	13	61	67	18	9	4	1.36
100111746--100111802	26	2.2	26	100	0	114	14	19	7	59	1.57
100112632--100112672	10	4.3	10	81	9	50	12	2	9	75	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100112629--100112666	19	2.0	20	89	5	60	10	2	10	76	1.12
100115750--100115957	104	2.0	104	98	0	398	23	18	25	32	1.97
100118482--100118528	19	2.5	19	86	6	60	27	19	8	44	1.79
100122813--100123066	39	6.4	40	84	2	264	22	24	26	27	2.00
100122813--100123064	79	3.2	79	84	2	292	22	24	26	27	2.00
100130881--100131059	45	3.8	45	76	13	175	34	15	18	31	1.93
100130928--100131080	51	3.1	49	73	14	163	35	16	16	30	1.92
100130882--100131147	96	2.8	96	85	0	327	34	17	18	28	1.94
100131106--100131246	44	3.2	44	80	2	167	31	15	22	29	1.95
100131815--100131843	15	1.9	15	100	0	58	17	0	6	75	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344