Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  206  of  344  ( 41197 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68382295--68382922
140
4.5
140
95
1
1114
37
21
16
24
1.93
68382479--68382584
54
1.9
55
81
5
126
39
18
13
28
1.88
68382564--68382597
13
2.5
13
90
4
50
58
8
11
20
1.59
68382619--68382724
54
1.9
54
83
9
135
37
20
14
27
1.91
68382855--68383020
72
2.3
71
85
6
219
42
21
13
22
1.88
68382895--68383141
122
2.0
124
88
3
374
39
22
12
25
1.89
68383020--68383194
71
2.5
70
85
3
219
34
22
14
28
1.93
68391472--68391507
12
3.0
12
95
0
63
41
5
25
27
1.77
68393568--68393614
18
2.6
18
93
0
76
6
31
38
23
1.80
68404538--68404591
17
3.6
17
68
31
59
20
0
22
57
1.41
68404537--68404589
27
2.0
27
100
0
106
22
0
20
56
1.42
68407296--68407353
30
1.9
30
82
6
73
15
29
34
20
1.94
68409172--68409237
6
11.3
6
82
6
55
74
1
4
19
1.07
68409169--68409233
23
2.8
22
79
9
67
73
1
4
20
1.08
68409172--68409237
17
3.8
16
78
13
60
74
1
4
19
1.07
68409169--68409237
12
6.0
11
78
9
75
73
1
4
20
1.07
68410901--68410955
3
18.3
3
87
7
76
65
3
1
29
1.20
68421238--68421278
19
2.2
19
95
0
73
78
0
17
4
0.93
68423280--68423366
43
2.0
43
84
8
115
27
28
19
24
1.98
68431829--68431912
26
3.2
26
96
0
150
35
23
5
34
1.80
68437833--68437885
11
5.0
10
86
2
61
30
1
47
20
1.61
68437833--68437887
22
2.5
22
91
2
85
30
1
45
21
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68441922--68441996
18
4.2
18
83
6
89
30
12
24
33
1.91
68442546--68442578
11
2.9
12
86
13
52
27
6
48
18
1.71
68443628--68443714
43
2.0
43
100
0
174
47
6
29
16
1.72
68443854--68443935
32
2.6
32
82
0
101
30
2
14
52
1.55
68445571--68445836
93
2.9
93
94
0
451
28
29
20
21
1.98
68445564--68445832
46
5.8
46
75
14
257
29
29
20
21
1.98
68453426--68453464
21
1.9
20
84
5
51
76
7
10
5
1.13
68453988--68454057
26
2.6
27
82
13
83
78
5
4
11
1.06
68453986--68454056
25
2.7
26
86
6
99
76
5
4
14
1.13
68455486--68456244
177
4.3
176
87
3
1011
28
17
24
28
1.98
68456165--68456329
85
1.9
85
88
0
249
26
21
21
30
1.98
68455997--68456505
262
2.0
253
84
5
671
27
18
24
29
1.98
68456243--68456618
177
2.1
176
88
2
549
28
17
26
28
1.97
68459650--68459781
19
7.4
17
68
20
58
59
0
5
34
1.25
68459638--68459689
22
2.4
22
80
0
68
63
0
5
30
1.18
68459707--68459764
12
4.8
12
73
23
50
58
1
5
34
1.30
68459705--68459783
25
2.9
29
82
17
98
59
1
5
34
1.27
68462638--68462670
17
1.9
17
93
0
57
39
0
30
30
1.57
68465468--68465611
32
4.6
30
67
24
84
26
18
25
30
1.98
68465417--68465579
60
2.7
61
83
9
183
28
19
24
27
1.98
68470115--68470253
60
2.3
60
80
8
140
29
19
25
25
1.98
68474016--68474200
15
11.8
15
71
19
112
36
2
0
60
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68474016--68474199
7
26.6
7
70
22
97
36
2
0
60
1.13
68474030--68474202
33
5.3
32
74
15
133
36
2
0
60
1.14
68474023--68474199
73
2.4
73
81
13
188
36
2
0
60
1.14
68474097--68474215
44
2.6
48
82
11
135
37
2
0
58
1.17
68474486--68474536
15
3.4
14
77
22
50
29
1
1
66
1.13
68485876--68486515
210
3.1
210
89
3
922
30
18
22
28
1.98
68488368--68488632
30
9.3
30
66
25
80
33
3
1
61
1.22
68488449--68488592
15
9.5
15
75
15
111
36
1
0
61
1.10
68488449--68488634
7
26.6
7
71
20
106
37
2
0
59
1.16
68488456--68488588
3
41.7
3
71
24
87
35
1
0
62
1.10
68488456--68488635
68
2.8
61
82
12
184
36
2
0
60
1.16
68488924--68488972
15
3.3
14
78
21
55
28
2
2
67
1.13
68492783--68492860
29
2.7
28
84
11
104
25
15
30
28
1.96
68492813--68493140
174
1.9
174
95
0
593
31
14
23
30
1.95
68500936--68501006
29
2.4
29
88
0
97
28
14
28
29
1.95
68500965--68501292
174
1.9
174
95
0
593
31
14
23
31
1.94
68505718--68505764
20
2.4
20
89
3
69
44
0
4
51
1.21
68505718--68505772
21
2.7
21
86
8
69
43
0
5
50
1.25
68506021--68506059
16
2.5
16
84
16
55
38
5
7
48
1.54
68506588--68506800
106
2.0
106
84
1
275
39
13
15
31
1.86
68509790--68509848
28
2.1
28
90
0
91
22
16
5
55
1.60
68511612--68511644
11
2.8
12
86
4
50
33
3
12
51
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68513187--68513285
44
2.2
44
87
0
144
37
17
12
33
1.86
68514941--68514979
20
2.0
20
94
0
69
51
20
10
17
1.74
68515494--68515541
25
1.9
25
91
0
78
47
0
0
52
1.00
68518225--68518265
21
2.0
21
100
0
82
34
0
9
56
1.32
68518249--68518428
37
4.7
36
69
17
96
44
1
3
50
1.27
68518274--68518324
17
3.1
16
83
8
50
47
0
3
49
1.20
68518295--68518444
17
9.0
17
65
22
61
44
0
2
53
1.17
68518406--68518607
43
4.9
42
67
19
122
43
2
4
50
1.36
68518240--68518705
119
3.9
119
92
3
737
42
1
5
49
1.36
68518543--68518588
15
3.0
15
84
9
58
47
0
2
50
1.13
68518663--68518703
15
2.6
16
81
14
50
43
0
2
53
1.13
68518831--68518935
44
2.5
40
76
18
115
32
29
3
34
1.76
68518829--68518937
45
2.6
44
81
11
131
32
29
4
33
1.78
68518917--68518965
16
3.1
16
90
0
80
24
36
4
34
1.75
68522550--68522682
49
2.7
49
86
5
171
24
19
33
22
1.97
68528247--68528420
46
3.7
46
80
6
190
27
18
29
24
1.98
68530312--68530353
20
2.1
20
100
0
84
40
4
4
50
1.45
68532964--68533086
49
2.5
49
86
2
158
27
21
28
22
1.99
68554055--68554083
11
2.7
11
94
5
51
0
17
24
58
1.38
68555918--68556007
5
16.8
5
79
13
67
76
1
4
17
1.01
68555918--68556022
33
3.2
33
75
17
103
76
1
3
18
1.03
68556569--68556611
22
1.9
23
90
4
70
9
39
16
34
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68557869--68558026
55
3.0
53
78
6
176
36
16
23
23
1.94
68558265--68558295
16
1.9
16
93
0
53
41
0
22
35
1.54
68565395--68565649
55
4.8
53
77
10
202
36
16
25
21
1.94
68570274--68570317
21
2.0
22
91
4
72
47
4
4
43
1.44
68571344--68571377
10
3.3
10
88
8
50
2
20
17
58
1.51
68578557--68578660
3
34.7
3
74
5
77
64
3
5
25
1.33
68579792--68579842
26
2.0
26
88
0
75
7
1
41
49
1.43
68580561--68580657
44
2.2
44
84
1
122
23
24
24
26
2.00
68580253--68580959
143
5.0
143
84
2
839
27
22
20
30
1.98
68580745--68580953
44
4.5
44
69
14
141
30
23
18
27
1.98
68580839--68580987
45
3.3
45
74
3
131
29
26
16
27
1.97
68580828--68580998
89
1.9
89
82
0
216
30
24
16
27
1.97
68582096--68582179
19
4.5
19
81
14
88
1
17
0
80
0.77
68582098--68582208
7
15.3
7
74
15
93
2
16
0
80
0.88
68582101--68582199
13
7.8
12
80
17
103
2
16
1
80
0.85
68582101--68582208
26
4.2
25
82
8
119
2
15
0
80
0.88
68586490--68586527
18
2.1
18
100
0
76
42
10
13
34
1.78
68588455--68588717
40
6.6
40
84
4
246
25
21
26
26
1.99
68590559--68590635
3
26.0
3
76
2
66
64
6
3
24
1.34
68590564--68590624
32
1.9
32
96
0
113
67
6
4
21
1.33
68591773--68591831
26
2.4
24
80
8
73
6
3
40
49
1.46
68592856--68592896
12
3.4
12
82
0
55
14
4
4
75
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68600047--68600094
24
2.0
24
100
0
96
25
16
8
50
1.73
68613045--68613188
40
3.6
39
91
3
225
22
28
22
27
1.99
68613038--68613188
80
1.9
80
92
0
257
22
27
21
27
1.99
68621113--68621374
40
6.6
40
91
0
418
23
27
20
28
1.99
68626374--68626491
49
2.4
49
75
0
119
33
17
23
24
1.96
68627181--68627225
22
2.0
22
86
0
63
28
6
20
44
1.76
68633117--68633293
47
3.8
46
83
6
187
22
32
21
24
1.98
68632982--68633292
94
3.3
92
73
10
263
23
29
19
27
1.98
68636600--68637308
356
2.0
355
88
0
1049
28
26
24
20
1.99
68638313--68638359
14
3.6
14
72
21
57
57
4
6
31
1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344