genome.fa.s10.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  93  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31036486--31036674	43	4.4	43	98	0	369	26	34	14	23	1.94
31038528--31038603	37	2.1	37	89	0	116	26	32	18	22	1.97
31038724--31039314	47	12.6	47	92	2	911	29	30	7	31	1.86
31041917--31042190	50	5.6	50	84	3	342	22	27	20	29	1.98
31046946--31048173	613	2.0	612	97	0	2341	23	26	15	35	1.94
31057413--31057562	53	2.8	54	82	1	194	20	25	18	36	1.95
31064168--31064341	46	3.8	46	80	10	210	21	21	28	28	1.99
31064162--31064335	93	1.9	93	93	0	303	20	21	29	27	1.98
31076886--31076939	27	2.0	27	85	0	72	40	9	12	37	1.76
31077192--31077367	50	3.5	50	82	3	194	26	18	25	30	1.98
31083037--31083268	49	4.7	49	82	3	277	25	18	26	29	1.98
31083039--31083282	100	2.4	99	82	8	239	26	18	25	29	1.98
31087858--31087890	17	1.9	17	93	0	57	54	3	18	24	1.57
31090002--31090039	12	3.2	12	81	11	51	60	2	7	28	1.38
31093078--31093106	11	2.5	12	94	5	51	72	13	0	13	1.13
31094023--31094083	25	2.4	25	75	5	59	60	3	3	32	1.29
31097858--31097993	40	3.4	40	90	5	206	23	28	22	25	1.99
31102716--31103522	402	2.0	403	93	0	1391	27	15	19	38	1.91
31108256--31108310	24	2.3	24	78	9	60	23	23	18	34	1.96
31114555--31114614	23	2.6	23	94	0	102	28	33	26	11	1.91
31126983--31127450	48	9.6	48	77	3	418	23	27	19	28	1.98
31126983--31127455	146	3.2	146	89	0	732	23	28	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31131970--31132293	48	6.7	48	79	4	330	29	19	26	24	1.98
31131970--31132293	96	3.4	95	87	4	436	29	19	26	24	1.98
31131970--31132242	95	2.9	96	91	2	433	29	18	26	25	1.98
31134760--31134798	21	1.9	21	94	5	71	20	30	38	10	1.86
31136023--31136195	46	3.7	45	80	11	165	23	30	19	27	1.98
31139521--31139598	16	5.4	16	64	22	55	38	2	16	42	1.62
31139520--31139609	28	3.2	28	96	1	164	41	3	16	38	1.65
31141387--31141413	14	1.9	14	100	0	54	62	0	0	37	0.95
31141639--31141690	25	2.0	25	82	17	63	32	1	1	63	1.16
31141935--31141962	7	4.0	7	100	0	56	71	0	0	28	0.86
31142985--31143014	16	1.9	15	93	6	51	10	30	0	60	1.30
31145778--31145869	39	2.4	39	81	0	112	21	27	10	40	1.87
31150151--31150206	28	2.0	28	100	0	112	35	28	17	17	1.93
31155984--31156021	19	2.0	20	85	15	53	39	23	0	36	1.55
31156249--31156370	46	2.7	46	93	0	199	29	27	21	21	1.98
31156247--31156389	46	3.1	45	84	6	137	29	27	20	21	1.98
31167219--31167280	25	2.4	25	78	2	70	43	3	14	38	1.62
31173988--31174025	19	2.0	20	85	15	53	39	23	0	36	1.55
31174253--31174416	46	3.6	45	76	11	170	31	28	18	22	1.97
31174254--31174422	93	1.8	93	89	2	268	30	28	18	21	1.97
31174248--31174433	46	4.0	45	70	17	114	30	29	17	22	1.97
31174845--31174904	30	2.0	30	83	6	77	31	25	8	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31178853--31179004	60	2.5	63	79	9	165	26	23	21	29	1.99
31178994--31179039	20	2.3	20	82	14	60	28	28	17	26	1.98
31183370--31183598	40	5.7	40	93	0	395	21	28	20	29	1.98
31197326--31197467	30	4.8	29	73	11	126	37	23	16	21	1.94
31197547--31197660	30	3.7	31	78	13	121	46	24	10	18	1.80
31197574--31197687	29	3.8	30	73	13	90	45	26	10	17	1.81
31197558--31197687	61	2.1	61	88	0	188	46	25	10	17	1.81
31197558--31197661	32	3.3	32	76	12	117	47	25	9	17	1.78
31204549--31204573	8	3.1	8	100	0	50	36	28	24	12	1.91
31204810--31204988	29	6.2	29	92	2	270	25	16	31	27	1.96
31227631--31227735	47	2.2	47	94	0	183	28	30	7	33	1.85
31231235--31231362	49	2.7	47	77	7	132	24	27	22	25	2.00
31239641--31239769	54	2.3	54	84	11	154	25	16	25	32	1.96
31250889--31250947	29	2.0	29	96	0	109	27	11	10	50	1.71
31256345--31256569	40	5.6	40	84	8	278	26	28	22	22	1.99
31256345--31256569	83	2.8	80	86	7	319	26	28	22	22	1.99
31263814--31263889	37	2.1	37	89	0	116	26	32	18	22	1.97
31264010--31264639	47	13.2	47	89	3	936	30	30	7	31	1.86
31264010--31264641	96	6.6	95	93	2	1009	30	30	7	31	1.86
31264010--31264639	191	3.3	191	94	1	1050	30	30	7	31	1.86
31266269--31266345	39	2.0	38	92	2	127	36	29	10	23	1.88
31268399--31268677	40	7.0	40	79	7	160	24	29	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31268484--31268728	80	3.0	80	87	1	321	24	28	20	26	1.99
31268428--31268721	120	2.5	120	81	5	283	25	28	20	25	1.99
31268532--31268729	40	4.9	40	91	2	308	22	28	21	27	1.99
31268747--31268825	29	2.7	29	86	5	106	27	32	15	24	1.95
31268830--31268944	43	2.7	43	97	0	221	26	33	15	24	1.95
31270810--31270885	37	2.1	37	89	0	116	26	32	18	22	1.97
31271006--31271635	47	13.2	47	89	3	936	30	30	7	31	1.86
31271006--31271637	96	6.6	95	93	2	1009	30	30	7	31	1.86
31271006--31271635	191	3.3	191	94	1	1050	30	30	7	31	1.86
31273267--31273344	39	2.0	39	94	0	138	37	29	10	23	1.88
31276395--31276579	79	2.3	81	84	7	236	24	22	27	25	2.00
31276396--31276579	40	4.6	40	83	9	216	24	22	27	25	2.00
31276396--31276612	79	2.7	79	81	7	201	25	22	27	24	2.00
31284253--31284435	39	4.6	41	80	11	213	24	22	27	25	2.00
31284254--31284468	78	2.7	78	79	9	181	26	21	27	24	1.99
31286738--31286839	38	2.7	35	80	8	105	24	24	22	28	1.99
31286759--31286865	37	2.9	36	80	8	117	21	23	24	30	1.99
31294155--31294241	31	2.8	31	82	3	113	24	28	17	29	1.97
31294444--31294527	26	3.4	25	84	11	84	27	20	22	29	1.98
31294460--31294527	26	2.7	26	90	4	104	26	20	26	26	1.99
31297144--31297194	27	1.9	26	84	4	66	17	27	17	37	1.93
31300707--31300981	47	5.8	47	89	0	388	31	8	30	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31301111--31301188	36	2.1	37	90	2	122	24	19	30	25	1.98
31302935--31302973	18	2.2	18	100	0	78	20	7	25	46	1.77
31319076--31319260	40	4.6	39	80	5	185	25	22	26	25	2.00
31319132--31319283	79	1.9	79	80	7	175	28	19	26	25	1.99
31322899--31323028	65	2.0	65	100	0	260	36	20	10	32	1.87
31330328--31330626	47	6.3	47	93	0	490	32	9	29	28	1.88
31330745--31330823	37	2.1	37	90	0	122	24	18	31	25	1.98
31337473--31337520	23	2.1	23	81	11	55	12	25	12	50	1.75
31348654--31348783	47	2.8	47	82	2	145	23	15	27	33	1.95
31349213--31349478	136	2.0	136	94	0	469	25	6	22	45	1.76
31350301--31350745	161	2.8	161	92	0	739	27	11	22	37	1.89
31356453--31356554	48	2.1	48	83	5	125	21	17	32	28	1.96
31358147--31358214	28	2.4	28	76	11	68	52	0	0	47	1.00
31363016--31363041	12	2.2	12	100	0	52	7	15	30	46	1.74
31367705--31367833	63	2.0	63	98	0	249	40	4	5	49	1.46
31368482--31368973	240	2.0	240	96	0	896	35	17	13	33	1.89
31369161--31369327	9	17.6	9	74	10	136	46	20	0	31	1.56
31369172--31369328	48	3.3	47	77	3	161	45	21	0	31	1.57
31369178--31369294	39	3.0	39	94	0	207	46	21	0	32	1.52
31369217--31369325	57	1.9	57	88	0	164	44	23	0	30	1.60
31369161--31369312	39	4.1	36	82	11	180	46	21	0	31	1.56
31375174--31375290	43	2.7	43	90	0	171	21	19	27	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31375718--31375781	7	9.0	7	77	3	65	25	3	25	46	1.67
31375734--31375784	15	3.5	15	86	2	68	23	1	27	47	1.63
31375718--31375780	14	4.4	14	80	4	72	23	3	25	47	1.66
31376376--31376429	7	7.6	7	97	2	99	61	0	0	38	0.96
31376376--31376486	21	5.0	22	84	3	91	68	0	0	30	0.96
31376376--31376486	15	7.6	15	86	4	111	68	0	0	30	0.96
31376426--31376466	7	5.7	7	94	5	73	87	0	0	12	0.53
31380555--31380811	43	6.0	43	86	2	376	23	20	29	26	1.99
31380566--31380818	126	2.0	127	92	0	427	23	20	28	27	1.99
31384750--31384970	46	4.7	47	78	12	206	23	28	19	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344