genome.fa.s10.2.7.7.80.10.50.1000.334.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  334  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108538866--108538911	3	15.0	3	82	13	58	0	36	0	63	0.95
108538880--108538908	10	2.9	10	100	0	58	0	37	0	62	0.96
108538866--108538911	13	3.7	13	81	18	62	0	36	0	63	0.95
108538966--108539011	23	2.0	23	86	0	65	0	32	0	67	0.91
108538966--108539000	18	2.0	17	94	5	61	0	37	0	62	0.95
108539260--108539376	30	3.9	29	78	11	103	44	3	21	30	1.69
108539275--108539376	30	3.4	30	83	2	125	44	3	21	30	1.70
108539648--108539897	53	4.7	54	89	6	377	35	18	15	30	1.92
108539909--108539941	13	2.4	14	95	5	59	69	9	9	12	1.36
108539902--108539949	14	3.5	14	85	5	62	62	8	10	18	1.52
108540025--108540889	72	12.1	72	92	3	1324	34	18	16	30	1.94
108540025--108540889	145	6.1	144	91	4	1326	34	18	16	30	1.94
108540022--108540872	217	4.0	217	92	3	1384	33	18	17	30	1.94
108540768--108541042	121	2.2	123	83	5	333	35	21	14	28	1.93
108556436--108556529	35	2.6	34	77	11	89	42	11	9	36	1.74
108556508--108556543	18	2.1	18	94	5	65	33	11	13	41	1.80
108556497--108556543	18	2.8	16	81	12	58	42	12	12	31	1.81
108556545--108556580	17	2.2	16	90	5	54	47	11	2	38	1.54
108556508--108556590	37	2.2	37	80	2	94	38	10	9	40	1.73
108556562--108556602	22	2.0	20	85	9	55	46	7	4	41	1.53
108556615--108556745	21	6.8	20	63	18	62	42	9	12	35	1.75
108556661--108556745	20	4.3	19	73	19	77	43	5	11	38	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108556665--108556869	17	11.6	18	68	17	90	42	8	13	35	1.74
108556612--108556859	37	6.9	37	72	14	128	42	9	14	33	1.78
108556663--108556820	59	3.0	51	80	10	160	42	8	12	36	1.73
108556774--108556864	34	2.6	34	83	11	114	40	8	14	36	1.77
108556775--108556904	17	7.3	17	69	26	74	43	9	13	33	1.76
108556841--108556944	39	2.7	38	81	10	129	45	10	9	34	1.72
108557350--108557389	21	1.9	21	94	0	71	42	20	20	17	1.89
108557414--108557492	7	11.1	7	76	12	72	0	20	2	77	0.89
108557411--108557492	20	3.9	21	78	13	78	0	20	2	76	0.89
108557414--108557490	13	6.0	13	75	14	70	0	19	2	77	0.88
108557416--108557500	43	2.0	42	82	13	102	0	20	2	77	0.88
108557693--108557751	26	2.2	27	82	8	68	5	11	5	77	1.08
108557772--108557815	18	2.4	18	84	0	61	9	27	45	18	1.79
108557858--108557925	6	11.3	6	90	4	66	0	26	0	73	0.83
108557868--108557926	3	20.0	3	82	3	75	0	28	0	71	0.87
108558005--108558062	20	3.0	20	80	9	68	0	37	0	62	0.96
108558288--108558404	30	3.9	29	77	11	94	44	3	21	30	1.69
108558303--108558404	30	3.4	30	83	2	125	44	3	21	30	1.70
108558400--108558428	14	2.0	15	93	6	51	17	0	0	82	0.66
108558679--108558928	53	4.7	54	90	6	386	35	18	15	30	1.92
108558941--108558973	13	2.4	14	95	5	59	69	9	9	12	1.36
108558934--108558981	14	3.5	14	85	5	62	62	8	10	18	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108559057--108559934	72	12.1	72	93	1	1418	33	18	17	30	1.94
108559057--108559934	145	6.1	144	94	2	1420	33	18	17	30	1.94
108559054--108559922	217	4.0	217	95	1	1483	33	18	17	30	1.94
108571852--108571923	16	4.3	16	75	16	65	43	9	12	34	1.76
108571977--108572014	18	2.2	18	86	9	53	39	7	5	47	1.55
108571851--108572297	17	25.1	17	69	14	165	44	10	11	33	1.75
108572059--108572125	22	3.0	22	87	10	93	40	7	7	44	1.61
108572104--108572294	35	5.5	32	74	12	121	45	10	14	28	1.79
108572292--108572342	18	2.9	17	77	8	57	47	7	9	35	1.66
108572845--108572894	7	6.9	7	93	6	82	0	16	0	84	0.63
108572836--108572898	15	4.1	15	87	8	92	0	17	0	82	0.67
108572835--108572910	22	3.3	22	76	15	82	0	18	0	81	0.69
108573204--108573249	3	15.0	3	82	13	58	0	36	0	63	0.95
108573218--108573246	10	2.9	10	100	0	58	0	37	0	62	0.96
108573204--108573249	13	3.7	13	81	18	62	0	36	0	63	0.95
108573304--108573356	17	3.1	17	84	13	65	0	33	0	66	0.92
108573305--108573354	10	5.2	10	76	7	50	0	32	0	68	0.90
108573600--108573716	30	3.9	29	77	11	94	44	3	21	30	1.69
108573615--108573716	30	3.4	30	83	2	125	44	3	21	30	1.70
108581827--108581868	22	1.9	22	85	0	57	33	7	9	50	1.62
108584379--108584438	29	2.0	29	83	3	75	36	21	8	33	1.84
108586380--108586433	26	2.1	24	83	16	65	46	9	0	44	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108586477--108586540	32	2.1	32	82	11	80	53	1	1	43	1.19
108589897--108589960	31	2.1	31	85	11	87	39	0	9	51	1.34
108591464--108591511	24	1.9	26	83	8	64	37	43	2	16	1.60
108594701--108594769	34	2.0	34	100	0	138	40	8	14	36	1.77
108601791--108601846	26	2.1	26	83	3	67	64	12	12	10	1.51
108606917--108606962	15	2.9	15	83	6	56	71	2	0	26	0.97
108608352--108608380	12	2.3	13	94	5	51	17	10	6	65	1.44
108608529--108608553	11	2.3	11	100	0	50	48	8	0	44	1.32
108614694--108615785	546	2.0	546	99	0	2177	39	12	11	36	1.80
108620252--108620314	33	2.0	32	81	6	74	47	4	1	46	1.33
108620604--108620649	15	3.0	15	77	3	56	60	0	0	39	0.97
108620601--108620652	15	3.5	14	72	12	50	65	0	0	34	0.93
108623615--108623741	50	2.6	49	78	12	136	29	23	4	42	1.74
108625278--108625314	18	2.1	18	89	0	56	45	2	2	48	1.30
108626812--108626885	18	4.1	18	70	16	53	28	51	1	18	1.55
108626794--108626867	37	2.0	38	94	2	132	29	48	1	20	1.58
108626852--108626887	18	2.0	18	94	0	63	25	58	0	16	1.38
108626957--108626995	11	3.4	11	85	7	51	28	0	30	41	1.57
108627201--108627320	63	1.9	63	83	8	156	25	5	6	62	1.40
108627531--108627570	21	1.9	21	84	0	53	25	12	5	57	1.55
108631403--108631447	21	2.1	21	84	8	56	42	20	20	17	1.90
108633969--108634014	13	3.5	13	82	11	58	71	0	28	0	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108633961--108634014	26	2.1	26	85	0	72	74	0	25	0	0.83
108633975--108634045	18	3.8	19	77	7	67	74	0	23	1	0.90
108633973--108634035	31	1.9	34	81	15	80	73	0	25	1	0.93
108635397--108635694	90	3.3	90	68	15	254	27	22	24	25	2.00
108635527--108635615	46	2.0	46	82	4	110	29	22	23	24	1.99
108635316--108635596	89	3.1	89	66	17	220	29	22	24	23	1.99
108635304--108635702	179	2.2	179	90	1	631	29	21	23	24	1.99
108635572--108636265	133	5.2	133	88	3	966	28	21	22	27	1.99
108635304--108635748	179	2.5	177	86	3	608	29	21	24	24	1.99
108635571--108636281	268	2.7	265	88	2	1037	29	20	22	27	1.99
108636499--108636555	29	2.0	29	89	6	89	33	47	1	17	1.58
108636522--108636596	37	2.0	37	97	0	141	28	54	1	16	1.50
108636538--108636610	18	4.0	18	71	16	69	26	56	1	16	1.49
108636899--108637025	63	2.0	63	83	10	161	26	4	5	62	1.37
108639450--108639488	16	2.4	17	83	8	55	5	12	38	43	1.65
108641009--108641062	25	2.2	25	86	6	74	61	1	1	35	1.18
108641031--108641070	19	2.2	18	86	4	53	60	0	7	32	1.25
108642657--108642695	15	2.6	15	84	8	53	66	0	5	28	1.12
108650189--108650224	6	6.0	6	93	0	63	80	0	0	19	0.71
108650712--108650758	25	1.9	25	86	4	69	46	6	4	42	1.48
108662951--108663111	51	3.2	51	94	0	268	29	22	14	32	1.94
108666899--108666958	18	3.3	18	79	9	68	31	15	10	43	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108672889--108672920	3	10.7	3	100	0	64	34	0	0	65	0.93
108673240--108673306	34	2.0	34	88	5	100	28	20	14	35	1.93
108688027--108688075	22	2.2	22	77	0	53	22	10	8	59	1.56
108688578--108688606	2	15.0	2	92	7	51	48	0	0	51	1.00
108688796--108688828	17	1.9	17	100	0	66	45	0	6	48	1.27
108689073--108689156	9	9.0	9	72	12	53	28	1	4	65	1.20
108689096--108689173	20	4.0	20	78	9	70	25	2	5	66	1.25
108689073--108689151	29	2.8	28	81	9	90	27	1	5	65	1.21
108689091--108689201	48	2.3	48	83	6	127	27	2	4	64	1.26
108689282--108689347	31	2.1	31	83	10	82	42	16	18	22	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344