Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  326  of  344  ( 41197 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106514770--106514937
73
2.3
72
85
2
228
36
38
0
24
1.60
106514759--106514909
15
10.3
15
72
3
76
38
37
0
23
1.60
106514844--106514909
7
9.1
7
77
6
60
37
39
1
21
1.63
106515160--106515197
16
2.6
14
91
8
58
47
31
0
21
1.51
106515424--106515478
28
2.0
28
85
0
74
27
1
21
49
1.60
106515580--106515621
16
2.7
16
82
13
52
23
0
30
45
1.53
106515570--106515622
23
2.3
23
77
6
63
24
0
33
41
1.55
106515672--106515702
6
5.3
6
92
7
55
67
12
0
19
1.22
106516017--106516097
41
2.0
42
85
4
112
29
23
16
30
1.96
106516010--106516100
41
2.2
40
80
7
103
29
23
15
31
1.95
106524360--106524441
32
2.5
33
78
13
80
20
23
39
17
1.92
106524909--106524995
35
2.5
35
100
0
174
22
20
29
26
1.99
106527163--106527192
12
2.4
13
88
11
53
10
13
40
36
1.78
106532028--106532110
41
2.0
41
97
0
157
30
20
9
39
1.84
106532285--106532327
22
1.9
23
85
4
61
62
4
2
30
1.28
106536763--106536787
13
1.9
13
100
0
50
64
12
0
24
1.27
106536751--106536807
29
2.0
29
82
0
69
61
8
1
28
1.36
106542045--106542087
19
2.3
19
84
8
52
44
2
0
53
1.13
106543180--106543214
16
2.1
17
89
5
54
68
0
0
31
0.90
106544868--106544928
6
10.2
6
75
7
52
62
4
4
27
1.37
106544868--106544927
21
2.9
21
84
0
66
61
5
5
28
1.38
106553077--106553196
51
2.4
51
91
0
186
38
12
22
26
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106561607--106561979
133
2.8
131
77
8
355
35
13
13
38
1.83
106563851--106563912
20
3.3
17
75
18
52
66
1
6
25
1.25
106563859--106563912
19
2.8
19
75
10
56
66
1
7
24
1.27
106563898--106563953
29
2.0
27
83
13
69
64
0
5
30
1.16
106564096--106564137
3
14.0
3
85
9
59
64
4
0
30
1.14
106564099--106564137
15
2.6
15
95
0
69
64
5
0
30
1.15
106566073--106566378
88
3.5
88
89
2
474
26
22
23
27
2.00
106566372--106567088
86
8.3
86
86
1
941
22
24
21
31
1.98
106566937--106567088
44
3.5
44
72
5
155
18
26
22
32
1.97
106568421--106568455
10
3.5
10
84
0
52
0
14
0
85
0.59
106569063--106569134
31
2.3
32
83
9
87
38
0
2
58
1.13
106571266--106571628
46
7.9
46
91
0
494
39
14
23
21
1.91
106571914--106571946
17
2.0
17
94
5
59
48
0
15
36
1.45
106574681--106574766
31
2.7
32
77
17
81
39
0
4
55
1.20
106574722--106574766
11
3.9
11
80
11
54
35
0
2
62
1.08
106576868--106577126
46
5.6
46
94
0
358
41
14
23
20
1.89
106577422--106577454
17
2.0
17
94
5
59
48
0
15
36
1.45
106581203--106581244
19
2.2
19
87
8
59
45
11
21
21
1.84
106583499--106583559
18
3.3
18
79
20
72
67
1
6
24
1.24
106583575--106583627
27
2.0
27
81
7
63
64
1
9
24
1.34
106583686--106583776
3
30.7
3
75
10
80
60
5
3
30
1.35
106586407--106586444
20
1.9
20
88
0
58
18
15
10
55
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106588473--106588535
9
6.9
9
76
20
60
60
1
0
38
1.07
106588489--106588545
17
3.4
17
81
13
73
59
1
0
38
1.08
106588480--106588566
26
3.2
26
78
18
88
62
1
0
36
1.03
106588489--106588545
9
6.8
8
81
18
71
59
1
0
38
1.08
106588498--106588565
7
9.1
7
80
16
50
61
1
0
36
1.05
106588446--106588566
10
13.4
9
73
19
85
64
1
0
33
1.09
106589282--106589358
29
2.6
29
79
6
75
35
2
3
58
1.30
106589328--106589378
22
2.3
22
80
16
61
41
1
3
52
1.31
106595879--106595931
7
7.6
7
95
0
88
30
11
32
26
1.91
106597591--106597731
70
2.0
70
98
0
273
26
3
27
41
1.72
106608378--106608426
24
2.0
24
100
0
98
36
12
4
46
1.60
106629754--106629801
10
4.8
10
82
10
53
66
2
6
25
1.26
106629752--106629811
20
3.0
19
76
9
66
66
1
6
25
1.25
106630396--106630434
11
3.5
11
82
6
51
33
0
0
66
0.92
106631654--106631722
20
3.8
18
85
11
81
76
0
1
21
0.86
106631667--106631717
11
4.2
13
77
22
58
78
0
0
21
0.75
106631667--106631722
16
3.4
17
79
13
64
78
0
0
21
0.75
106631655--106631722
16
4.2
16
74
20
61
76
0
1
22
0.87
106631655--106631725
24
3.0
23
86
13
92
76
0
1
22
0.87
106631654--106631725
12
5.9
12
76
23
71
76
0
1
22
0.86
106635237--106635268
5
6.4
5
100
0
64
21
0
0
78
0.76
106635600--106635949
131
2.7
131
92
0
567
26
17
20
35
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106636903--106636962
28
2.1
29
90
3
95
23
33
21
21
1.97
106640231--106640267
13
2.8
13
87
4
56
43
13
0
43
1.44
106645347--106645389
18
2.5
17
75
20
52
58
0
2
39
1.11
106646034--106646061
14
2.0
14
100
0
56
42
0
0
57
0.99
106647973--106648034
19
3.1
19
70
20
63
17
17
17
46
1.84
106647957--106648034
41
1.9
41
94
0
138
17
16
20
44
1.86
106650390--106650428
17
2.3
17
86
0
51
15
2
2
79
0.95
106651535--106651864
73
4.5
72
84
7
398
33
18
16
32
1.93
106651612--106651864
73
3.5
72
92
3
400
31
18
17
32
1.94
106651797--106652041
88
2.8
86
84
4
285
34
19
18
28
1.95
106652071--106652212
72
1.9
72
84
4
185
33
19
14
33
1.92
106654822--106654886
32
2.0
32
100
0
130
30
6
24
38
1.80
106656367--106656419
26
2.0
26
85
7
72
37
22
15
24
1.92
106659324--106659355
15
2.1
15
94
0
55
28
6
0
65
1.16
106660361--106660439
16
5.1
16
76
11
74
54
0
7
37
1.29
106663694--106663718
10
2.5
10
100
0
50
92
0
0
8
0.40
106663818--106663852
11
3.2
11
88
11
54
0
54
0
45
0.99
106664335--106664380
23
2.0
23
83
8
58
30
2
10
56
1.46
106664615--106664651
19
1.9
19
88
0
56
40
2
5
51
1.39
106665918--106666025
26
4.2
26
89
0
171
32
7
24
36
1.83
106678843--106678869
13
2.1
13
100
0
54
0
22
22
55
1.44
106683380--106683635
75
3.4
75
80
6
245
33
16
18
31
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106685531--106685575
22
2.0
22
82
0
54
28
6
2
62
1.33
106685738--106685835
11
8.7
12
74
15
59
41
0
3
55
1.15
106685738--106685906
35
4.2
38
72
21
100
39
1
4
55
1.30
106685773--106685813
19
2.2
19
90
0
64
39
0
2
58
1.11
106685785--106685836
22
2.4
21
83
3
68
42
0
3
53
1.19
106685738--106685838
42
2.3
44
83
14
129
41
0
2
55
1.15
106685830--106685906
23
3.3
23
77
15
70
36
3
5
54
1.41
106685849--106685929
22
3.6
23
75
18
80
34
1
4
59
1.27
106685939--106685990
23
2.2
23
82
6
59
30
1
9
57
1.42
106685939--106686189
24
10.9
23
67
21
100
33
3
7
55
1.46
106686138--106686255
13
9.2
12
67
18
51
34
4
4
56
1.38
106686154--106686217
14
4.6
14
72
14
51
32
3
4
59
1.34
106686169--106686253
37
2.3
39
77
10
95
34
3
4
57
1.37
106686402--106686460
22
2.6
22
75
2
55
35
6
3
54
1.44
106691826--106691856
15
2.1
15
100
0
62
38
6
32
22
1.80
106692793--106692822
15
2.0
15
93
0
51
23
6
46
23
1.75
106696127--106696162
18
1.9
19
88
5
56
25
0
8
66
1.19
106696129--106696170
19
2.2
19
83
8
50
23
0
9
66
1.21
106700473--106700521
21
2.3
23
79
13
59
55
4
0
40
1.19
106707395--106707503
54
2.0
54
89
0
164
30
27
15
26
1.96
106722311--106722403
18
5.2
18
84
0
123
32
13
23
30
1.94
106724231--106724270
20
2.0
20
95
0
71
35
10
22
32
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106726701--106726784
26
3.2
26
96
0
150
33
4
25
36
1.77
106731028--106731073
18
2.5
19
80
16
60
28
10
0
60
1.30
106737656--106737683
12
2.3
12
100
0
56
14
7
7
71
1.29
106737578--106737843
85
3.0
87
82
6
308
26
14
19
39
1.90
106737772--106738139
74
4.9
72
80
10
308
30
16
20
32
1.95
106737918--106738218
74
3.7
82
80
12
318
27
15
21
34
1.94
106737986--106738297
74
4.2
74
74
16
329
27
15
22
34
1.94
106738161--106738284
66
1.9
66
89
0
194
31
16
24
28
1.96
106738225--106738563
89
3.8
88
83
7
470
28
15
19
36
1.93
106738493--106738795
73
3.9
73
75
13
291
27
16
21
33
1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344