genome.fa.s10.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  110  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37156624--37156662	20	1.9	20	84	5	51	35	2	10	51	1.50
37160599--37160624	13	2.0	13	100	0	52	15	38	30	15	1.88
37165661--37165756	49	2.0	49	91	0	156	28	23	23	23	2.00
37166483--37166525	16	2.7	16	89	7	61	6	18	13	60	1.55
37186618--37186839	40	5.6	40	82	10	242	25	27	21	24	1.99
37186620--37186835	119	1.8	120	83	7	287	25	26	21	25	2.00
37194574--37194812	40	6.0	40	81	7	240	24	27	21	25	1.99
37194593--37194809	79	2.7	77	79	8	229	25	27	21	25	2.00
37194593--37194812	39	5.6	40	84	6	236	25	27	21	25	1.99
37201973--37202007	16	2.2	16	100	0	70	31	5	40	22	1.78
37207904--37207930	14	1.9	14	100	0	54	59	11	7	22	1.56
37210422--37210473	23	2.3	23	83	9	63	65	3	7	23	1.35
37221120--37221164	22	2.0	22	95	0	81	22	26	13	37	1.91
37224438--37224603	40	4.2	40	95	0	280	26	27	22	23	1.99
37232095--37232176	40	2.0	40	88	4	121	29	26	20	23	1.99
37235125--37235281	54	2.9	54	86	3	201	30	9	20	39	1.84
37235128--37235281	81	1.9	81	85	2	211	31	9	19	39	1.84
37235126--37235268	27	5.3	27	84	5	182	28	9	22	39	1.84
37235163--37235281	27	4.4	27	87	4	114	32	11	17	37	1.86
37235280--37235477	27	7.3	27	86	2	263	38	7	24	28	1.83
37235280--37235477	81	2.4	81	90	1	299	38	7	24	28	1.83
37244306--37244337	16	2.0	16	93	0	55	12	31	15	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37248166--37248226	30	2.0	30	87	0	86	39	8	22	29	1.83
37256325--37256502	27	6.6	27	83	3	178	29	28	15	26	1.96
37256346--37256501	82	1.9	81	86	3	224	29	28	15	26	1.96
37260717--37260809	47	2.0	47	97	0	177	62	19	6	11	1.50
37266042--37266217	46	3.8	46	78	15	191	22	20	27	28	1.99
37266038--37266210	93	1.9	93	91	0	283	23	20	28	27	1.99
37269158--37269226	15	4.6	15	83	0	84	11	17	13	57	1.64
37269149--37269228	30	2.7	30	82	7	99	11	17	15	56	1.67
37271159--37271283	46	2.7	46	93	0	205	20	20	28	31	1.97
37281470--37281503	18	1.9	17	88	5	50	73	0	11	14	1.10
37297571--37297622	23	2.3	23	83	9	63	65	5	7	21	1.40
37325983--37326023	20	2.1	19	86	4	55	51	2	14	31	1.56
37326388--37326439	23	2.3	23	83	9	63	65	5	7	21	1.40
37356598--37356748	28	5.4	28	92	1	223	25	11	28	33	1.92
37364798--37364951	28	5.5	28	96	0	265	25	11	29	33	1.91
37364773--37364951	56	3.2	56	90	1	270	25	11	29	34	1.91
37370712--37370747	12	3.0	12	95	0	63	47	0	0	52	1.00
37372718--37372874	39	4.0	39	90	1	217	29	28	17	24	1.97
37377284--37377455	40	4.3	40	88	2	222	25	27	21	25	1.99
37377286--37377508	40	5.6	39	83	5	216	25	27	21	25	1.99
37377284--37377508	80	2.8	79	80	7	240	25	27	21	25	1.99
37377440--37377517	40	1.9	41	82	10	97	26	28	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37385208--37385379	40	4.3	40	88	2	222	25	27	21	25	1.99
37385208--37385422	80	2.7	79	79	5	227	26	27	20	25	1.99
37391936--37392089	39	3.9	39	90	1	220	27	27	21	23	1.99
37391920--37392064	78	1.9	78	85	0	200	26	27	20	24	1.99
37400022--37400175	39	4.0	38	88	4	209	29	27	20	22	1.99
37400019--37400175	78	2.0	78	88	0	233	28	27	20	23	1.99
37405457--37405680	40	5.6	40	85	3	279	24	23	26	25	2.00
37405461--37405680	83	2.7	80	86	5	266	23	23	27	25	2.00
37410396--37410662	40	6.7	40	94	0	471	21	27	20	29	1.98
37418886--37419191	40	7.7	40	94	0	533	22	27	19	30	1.98
37418886--37419191	119	2.6	120	94	0	533	22	27	19	30	1.98
37425809--37426032	40	5.6	40	84	5	263	24	22	26	26	2.00
37425809--37426028	83	2.7	80	84	8	259	23	22	26	27	2.00
37431869--37432015	39	3.8	39	91	0	231	29	27	19	24	1.98
37434425--37434483	31	1.9	31	100	0	118	25	16	10	47	1.78
37436137--37436215	37	2.1	37	90	0	122	25	31	18	24	1.98
37436334--37436832	47	10.4	47	92	1	692	28	29	9	32	1.89
37436678--37436818	49	3.0	45	93	6	228	29	29	8	31	1.87
37444813--37444922	28	4.0	28	89	1	150	36	20	24	18	1.95
37448823--37448903	28	2.9	28	83	8	103	37	19	24	18	1.94
37449004--37449053	26	1.9	26	95	0	91	26	12	26	36	1.91
37450124--37450180	18	3.2	18	80	7	71	66	0	29	3	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37457754--37457961	46	4.5	46	78	9	217	23	22	25	28	1.99
37471620--37471841	40	5.6	40	90	1	340	23	23	26	26	2.00
37475094--37475271	27	6.6	27	84	3	205	29	28	15	26	1.96
37475115--37475270	82	1.9	81	88	3	233	29	28	15	26	1.96
37475752--37475777	12	2.2	12	100	0	52	42	0	7	50	1.31
37483186--37483363	27	6.6	27	84	3	205	29	28	15	26	1.96
37483207--37483362	82	1.9	81	88	3	233	29	28	15	26	1.96
37485450--37485627	27	6.6	27	83	3	205	26	15	28	29	1.96
37485451--37485606	82	1.9	81	88	3	233	26	15	28	29	1.96
37485447--37485627	82	2.2	81	83	2	229	27	15	27	29	1.96
37493523--37493692	26	6.4	27	84	5	152	26	14	28	30	1.95
37493523--37493692	53	3.2	54	81	8	172	26	14	28	30	1.95
37495780--37495863	43	2.0	43	92	0	141	33	11	25	29	1.91
37507106--37507253	42	3.5	42	79	4	129	26	15	25	32	1.95
37508663--37508993	48	6.9	48	81	3	360	28	18	28	24	1.98
37515504--37515680	55	3.2	55	88	0	237	30	29	13	26	1.94
37515504--37515655	27	5.6	27	91	3	223	29	28	13	27	1.94
37520011--37520180	46	3.7	46	73	10	157	28	28	21	21	1.98
37520112--37520197	46	1.9	45	85	4	120	29	26	20	23	1.99
37521810--37521923	57	2.0	57	92	0	192	21	26	21	30	1.98
37526723--37527050	48	6.8	48	81	4	338	28	18	27	24	1.98
37526726--37527050	96	3.4	96	82	1	373	28	19	27	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37526735--37527056	144	2.2	144	81	5	373	29	19	26	24	1.99
37529293--37529346	27	2.0	27	85	3	74	35	20	22	22	1.96
37529347--37529491	27	5.4	27	83	1	157	25	19	18	36	1.94
37529376--37529491	54	2.2	53	92	1	187	25	18	17	38	1.92
37536142--37536192	27	1.9	26	84	4	66	35	17	27	19	1.94
37536803--37536859	27	2.1	27	83	0	69	38	19	21	21	1.93
37536840--37536984	27	5.4	27	83	3	166	26	20	17	35	1.95
37548608--37548783	46	3.8	46	77	14	191	21	19	30	28	1.98
37548605--37548776	93	1.8	93	92	2	292	21	20	30	27	1.98
37551910--37551940	16	1.9	16	93	0	53	48	25	19	6	1.72
37552174--37552282	28	3.9	28	77	9	114	31	12	30	25	1.93
37559820--37559871	24	2.2	23	89	3	77	53	25	15	5	1.63
37559820--37559871	8	6.6	8	80	10	63	53	25	15	5	1.63
37559821--37559875	16	3.4	16	94	0	92	52	25	16	5	1.65
37560091--37560237	29	5.2	29	83	4	167	30	12	29	27	1.93
37560103--37560237	57	2.4	57	85	5	166	29	14	30	25	1.95
37564163--37564210	24	2.0	24	83	0	60	39	8	8	43	1.65
37568885--37569110	27	8.3	27	82	2	247	24	12	20	42	1.87
37568885--37569110	81	2.8	81	83	6	287	24	12	20	42	1.87
37569438--37569501	18	3.6	18	89	4	94	21	17	15	45	1.85
37573697--37573897	108	1.8	110	87	4	300	22	23	17	35	1.95
37573697--37573904	55	3.8	51	78	12	195	22	24	17	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37576327--37576876	140	4.0	140	83	4	715	45	6	8	39	1.60
37576327--37576874	273	2.0	279	86	3	777	45	6	8	39	1.60
37576858--37576999	75	1.9	75	86	2	205	32	14	8	44	1.76
37587445--37587917	47	10.1	47	90	0	669	33	11	29	25	1.91
37587799--37587874	22	3.3	22	66	28	59	34	11	28	25	1.91
37587891--37588027	46	3.0	46	91	0	220	34	8	31	25	1.86
37589524--37589878	40	8.9	40	88	1	480	23	21	29	25	1.99
37593835--37594260	47	9.1	47	89	0	611	34	11	28	25	1.91
37594005--37594074	24	3.0	24	69	29	60	31	12	32	22	1.92
37594142--37594217	22	3.3	22	66	28	59	34	11	28	25	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344