genome.fa.s10.2.7.7.80.10.50.1000.193.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  193  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64547009--64547592	210	2.8	210	83	2	629	34	15	22	27	1.94
64547285--64547860	210	2.8	206	80	4	627	34	14	22	28	1.94
64547285--64547860	207	2.8	206	80	4	629	34	14	22	28	1.94
64547999--64548076	38	2.1	38	92	0	129	41	6	23	29	1.79
64550561--64550620	22	2.7	23	73	19	63	66	6	0	26	1.16
64550570--64550603	4	8.0	4	90	9	50	73	2	0	23	0.97
64552001--64552039	18	2.2	18	85	0	51	12	23	2	61	1.43
64554370--64554429	22	2.7	23	73	19	63	66	6	0	26	1.16
64554379--64554412	4	8.0	4	90	9	50	73	2	0	23	0.97
64561842--64561881	19	2.2	18	95	4	71	40	2	15	42	1.60
64561842--64561888	19	2.5	19	86	3	69	36	2	14	46	1.57
64561898--64561994	42	2.3	42	85	3	133	30	6	14	48	1.68
64565798--64565845	19	2.6	19	86	3	71	35	2	14	47	1.56
64565862--64565949	42	2.1	42	89	0	131	29	5	13	51	1.64
64567220--64567256	19	1.9	19	100	0	74	37	2	16	43	1.62
64567298--64567377	41	2.0	41	94	0	142	32	5	12	50	1.62
64571054--64571094	19	2.2	19	95	0	73	39	4	12	43	1.63
64571143--64571220	40	2.0	40	100	0	156	33	5	12	48	1.63
64579845--64579880	18	2.0	18	100	0	72	55	11	0	33	1.35
64596727--64597014	152	1.9	154	91	3	476	43	10	4	42	1.59
64597851--64598232	42	9.2	42	81	4	405	38	22	17	21	1.93
64597852--64598163	128	2.5	125	81	6	357	39	21	17	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64598060--64598178	40	3.0	39	80	3	132	36	20	20	22	1.95
64598624--64598701	21	3.8	20	79	12	77	1	7	8	82	0.91
64604012--64604151	27	5.2	28	90	5	184	35	22	24	18	1.96
64605770--64605853	26	3.2	26	94	3	143	36	23	3	35	1.73
64609586--64609621	3	12.0	3	100	0	72	33	0	0	66	0.92
64610105--64610145	15	2.7	15	88	3	64	63	0	19	17	1.31
64611559--64611665	48	2.2	48	83	1	126	32	26	16	24	1.96
64613059--64613088	10	2.9	10	95	5	51	73	0	6	20	1.05
64613250--64613330	40	2.0	41	95	2	146	45	8	20	24	1.79
64624134--64624223	44	2.1	41	82	12	101	31	23	8	36	1.86
64626518--64626559	18	2.3	18	87	0	57	52	2	7	38	1.42
64632548--64632646	19	5.2	19	83	11	123	38	7	17	37	1.77
64632598--64632628	5	6.2	5	100	0	62	38	0	22	38	1.54
64632548--64632646	36	2.6	39	82	14	111	38	7	17	37	1.77
64635200--64635415	27	8.0	27	86	3	310	26	22	10	40	1.86
64636535--64636607	21	3.5	20	74	18	60	61	2	6	28	1.35
64637821--64638230	27	15.2	27	79	10	419	27	22	9	40	1.84
64637821--64638230	54	7.6	54	85	6	512	27	22	9	40	1.84
64637821--64638235	81	5.1	82	83	6	481	26	22	9	41	1.84
64638240--64638435	27	7.3	27	86	0	257	35	19	19	25	1.96
64638634--64638716	27	3.1	26	87	5	112	19	21	21	37	1.94
64639035--64639093	27	2.2	27	81	6	66	20	23	18	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64639042--64639100	27	2.2	26	85	5	82	15	23	23	37	1.93
64639218--64639399	6	29.8	6	70	17	117	21	19	12	46	1.83
64639218--64639345	25	4.7	25	70	22	87	22	21	11	44	1.84
64639279--64639399	25	4.7	24	80	16	118	21	19	12	47	1.82
64639218--64639376	86	1.8	86	93	0	273	22	19	12	45	1.84
64642058--64642089	15	2.1	15	94	0	55	50	12	18	18	1.78
64642449--64642549	39	2.6	38	90	3	157	14	26	22	35	1.93
64642467--64642531	21	3.2	21	74	12	82	13	26	20	40	1.89
64652315--64652373	3	19.3	3	79	10	66	64	1	1	32	1.13
64652318--64652371	28	1.9	28	88	7	83	64	1	1	31	1.14
64652673--64652724	12	4.2	12	79	13	52	57	0	7	34	1.27
64659397--64659445	26	1.9	26	88	12	75	34	4	6	55	1.44
64661476--64661538	30	2.1	30	93	0	108	25	3	14	57	1.52
64661660--64661692	11	2.9	12	86	13	52	66	0	0	33	0.92
64662380--64662429	21	2.3	21	83	10	57	50	4	4	42	1.40
64664856--64665328	194	2.5	185	86	8	614	29	17	19	33	1.95
64666558--64666605	19	2.5	20	80	16	57	29	0	4	66	1.10
64666642--64666685	22	2.0	22	100	0	88	27	9	31	31	1.88
64676341--64676406	23	3.1	21	72	18	55	59	0	1	39	1.07
64686392--64686435	18	2.4	18	80	3	52	50	13	13	22	1.77
64693785--64693841	20	2.8	20	82	10	80	7	28	0	64	1.19
64698746--64698905	43	3.7	43	81	5	189	25	18	25	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64704891--64704917	6	4.5	6	100	0	54	55	44	0	0	0.99
64706547--64706600	27	2.0	27	100	0	108	22	18	22	37	1.95
64707898--64707925	7	4.0	7	100	0	56	85	0	0	14	0.59
64711051--64711097	21	2.2	21	77	7	51	55	2	6	36	1.37
64712127--64712161	17	2.0	18	88	5	54	42	0	0	57	0.99
64714554--64714593	21	1.9	21	84	0	53	27	10	30	32	1.89
64720305--64720402	44	2.2	44	88	0	151	27	24	18	29	1.98
64720327--64720803	44	10.7	44	74	9	266	27	20	19	33	1.96
64720368--64720750	89	4.3	88	72	10	209	27	19	19	33	1.96
64720574--64720669	49	2.0	49	82	0	120	25	22	18	33	1.97
64721888--64721992	42	2.5	42	92	6	167	36	22	22	18	1.95
64721888--64721999	21	5.2	22	78	8	124	36	21	23	18	1.95
64723714--64724448	89	8.3	88	77	4	548	29	20	16	33	1.95
64723713--64724222	133	3.8	133	85	0	617	29	20	16	33	1.94
64723714--64724448	222	3.3	222	82	3	782	29	20	16	33	1.95
64724155--64724448	133	2.2	132	81	3	347	28	22	17	31	1.96
64725337--64725382	5	9.8	5	86	9	62	0	19	0	80	0.71
64725337--64725382	9	4.9	10	87	10	62	0	19	0	80	0.71
64725337--64725392	23	2.6	21	78	15	62	0	19	1	78	0.84
64725337--64725382	23	2.0	24	87	12	69	0	19	0	80	0.71
64734417--64734601	50	3.7	50	85	1	237	29	27	18	25	1.98
64734417--64734601	101	1.8	99	87	2	271	29	27	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64738320--64738363	22	2.0	22	90	0	70	54	0	0	45	0.99
64738383--64738408	13	2.0	13	100	0	52	61	0	0	38	0.96
64738446--64738502	15	3.5	15	73	17	60	50	0	0	49	1.00
64738925--64738963	14	2.8	14	96	0	69	38	5	2	53	1.37
64745437--64745539	25	4.2	26	77	14	69	34	23	23	18	1.96
64745497--64745571	25	3.1	23	76	16	64	38	22	25	13	1.90
64745517--64745564	24	1.9	26	83	8	64	41	22	25	10	1.85
64750549--64750609	18	3.4	18	93	0	95	39	22	6	31	1.80
64751386--64751415	15	2.0	15	100	0	60	33	0	0	66	0.92
64751890--64751947	27	2.1	27	93	0	98	20	39	1	37	1.63
64753697--64753724	3	9.3	3	100	0	56	35	0	0	64	0.94
64756394--64756540	65	2.3	65	91	0	240	42	25	10	21	1.85
64758720--64758744	4	6.2	4	100	0	50	76	24	0	0	0.80
64760538--64760571	15	2.3	15	100	0	68	61	11	5	20	1.50
64762836--64762893	27	2.1	27	93	0	98	18	37	5	37	1.74
64764627--64764651	3	8.3	3	100	0	50	32	0	0	68	0.90
64768761--64768833	26	2.7	27	85	10	87	32	12	24	30	1.92
64770147--64770204	18	3.5	17	78	19	61	60	1	13	24	1.43
64771246--64771278	7	5.0	7	92	7	52	75	0	0	24	0.80
64771239--64771300	6	9.7	6	79	11	52	79	1	4	14	0.98
64771239--64771294	20	2.8	19	86	5	67	78	1	3	16	0.97
64771246--64771287	13	3.2	13	83	16	52	78	0	2	19	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64771239--64771300	26	2.3	26	81	8	72	79	1	4	14	0.98
64771451--64771488	18	2.1	19	85	5	51	0	13	15	71	1.16
64776840--64776904	4	17.0	4	70	20	50	69	0	3	27	1.03
64776840--64776912	11	6.5	11	68	13	51	71	0	2	26	1.00
64776844--64776882	7	5.3	7	93	6	60	71	0	0	28	0.86
64781636--64781791	77	2.0	77	100	0	312	28	26	6	37	1.81
64783286--64783556	49	5.7	46	78	9	208	25	31	18	25	1.97
64783286--64783601	47	6.6	49	76	10	192	25	30	18	26	1.98
64783286--64783561	144	1.9	145	83	7	364	25	31	18	25	1.97
64783334--64783604	94	2.8	98	76	5	275	24	31	18	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344