genome.fa.s10.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  94  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31392379--31392553	46	3.8	46	80	6	183	22	28	19	30	1.98
31394733--31394769	18	2.1	18	100	0	74	40	10	5	43	1.63
31403231--31403402	93	1.8	93	94	0	308	28	29	20	20	1.98
31403224--31403399	46	3.8	46	79	12	207	29	29	20	20	1.98
31403273--31403411	47	3.0	46	75	16	144	29	28	19	22	1.98
31406030--31406117	26	3.3	26	67	10	61	28	11	2	57	1.45
31406024--31406127	52	2.0	52	83	9	133	27	10	2	58	1.46
31416650--31416695	24	1.9	24	86	0	65	36	21	23	17	1.94
31417134--31417175	21	2.0	21	85	0	57	42	14	0	42	1.45
31417146--31417175	10	2.8	11	90	10	53	40	16	0	43	1.48
31418542--31418755	47	4.6	47	77	11	192	28	16	30	23	1.97
31425740--31425790	20	2.7	19	82	14	54	41	0	21	37	1.54
31426584--31426756	49	3.6	46	83	8	204	26	22	27	23	1.99
31437979--31438156	27	6.6	27	83	3	205	27	15	28	29	1.96
31437980--31438135	82	1.9	81	86	3	224	27	15	28	28	1.96
31437976--31438156	82	2.2	81	82	2	220	27	15	27	29	1.96
31442398--31442427	15	2.0	15	93	0	51	40	10	0	50	1.36
31445050--31445112	23	2.8	23	79	11	76	41	17	1	39	1.59
31467367--31467413	23	2.0	23	91	0	76	44	10	12	31	1.77
31467520--31467544	12	2.1	12	100	0	50	52	0	0	48	1.00
31472164--31472440	48	5.8	48	94	0	455	36	6	26	31	1.81
31481917--31482116	27	7.4	27	88	1	276	34	20	22	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31482741--31482983	67	3.6	67	90	0	351	18	25	20	34	1.96
31482984--31483043	27	2.3	27	85	2	77	21	23	20	35	1.96
31486934--31486994	15	4.1	15	80	0	77	9	11	16	62	1.54
31486935--31486993	30	2.0	30	93	0	100	10	11	16	61	1.57
31489478--31489641	46	3.5	46	74	15	158	21	19	29	29	1.98
31496139--31496342	40	5.1	40	90	3	295	25	27	23	23	2.00
31498659--31498722	31	2.1	31	90	0	101	23	23	17	35	1.95
31498937--31499058	49	2.6	47	94	5	212	29	21	20	28	1.98
31498930--31499058	24	5.4	24	92	5	210	28	22	20	28	1.98
31499108--31499146	20	2.0	20	94	0	69	33	20	10	35	1.86
31499660--31499687	8	3.5	8	100	0	56	14	21	21	42	1.88
31514724--31514829	23	4.4	24	88	7	162	29	22	18	29	1.98
31514886--31514938	9	5.4	9	75	16	52	37	20	7	33	1.81
31514878--31514944	20	3.3	20	89	0	107	34	20	10	34	1.87
31514890--31514933	15	2.9	15	81	18	56	34	20	9	36	1.84
31519415--31519445	16	1.9	16	93	0	53	32	22	3	41	1.70
31519673--31519806	53	2.5	53	82	2	169	21	23	20	35	1.96
31519614--31519864	55	4.8	53	76	7	208	22	23	17	36	1.94
31527360--31527560	108	1.8	110	88	4	309	22	24	18	33	1.97
31527313--31527568	55	4.8	54	78	10	226	22	24	17	35	1.95
31538110--31538153	19	2.2	20	84	4	54	34	25	18	22	1.96
31538753--31538791	8	4.9	8	96	0	69	2	23	23	51	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31545506--31545633	29	4.5	28	86	2	166	33	25	12	28	1.92
31545505--31545633	57	2.3	57	86	2	179	33	25	12	28	1.92
31545669--31545770	51	2.0	51	100	0	204	25	29	5	39	1.79
31551247--31551272	6	4.3	6	100	0	52	84	0	0	15	0.62
31556744--31556950	46	4.5	46	76	13	169	27	20	28	23	1.99
31556781--31557086	46	6.5	45	75	11	183	27	18	29	23	1.98
31557029--31557419	131	3.0	131	98	0	746	28	16	26	28	1.97
31564319--31564344	13	2.0	13	100	0	52	30	7	23	38	1.83
31573963--31574075	51	2.2	51	95	0	199	28	24	19	27	1.99
31573945--31574076	25	5.3	25	82	4	169	28	23	19	28	1.98
31574133--31574162	15	1.9	15	93	6	51	33	20	0	46	1.51
31574205--31574252	25	2.0	24	83	4	60	27	14	25	33	1.94
31578219--31578400	40	4.6	39	82	6	197	24	28	22	24	2.00
31578221--31578400	79	2.3	80	82	5	213	24	27	22	25	2.00
31580278--31580303	12	2.2	12	100	0	52	38	46	7	7	1.61
31585299--31585434	51	2.7	51	89	4	215	27	23	20	28	1.99
31585299--31585435	25	5.4	25	83	5	170	27	23	20	28	1.99
31585482--31585556	20	3.8	20	86	6	93	33	17	10	38	1.84
31585499--31585535	11	3.5	11	78	14	51	32	21	10	35	1.88
31586124--31586164	14	3.0	14	83	13	50	24	34	9	31	1.88
31587932--31587957	5	5.2	5	100	0	52	80	0	0	19	0.71
31593566--31593916	46	7.4	48	76	10	273	28	19	28	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31593660--31593923	100	2.8	94	82	11	294	26	18	29	24	1.98
31597397--31597447	22	2.3	22	100	0	102	35	17	7	39	1.79
31599404--31599434	15	2.1	15	93	0	53	54	25	0	19	1.44
31604197--31604226	7	4.3	7	91	0	51	40	26	0	33	1.57
31604401--31604438	20	1.9	20	88	0	58	36	31	13	18	1.89
31611198--31611229	13	2.4	14	94	5	57	50	21	6	21	1.71
31613751--31613923	93	1.9	93	92	0	292	27	29	21	21	1.98
31613744--31613916	46	3.7	46	77	13	192	28	29	20	21	1.98
31613795--31613938	46	3.1	45	71	18	109	30	27	19	22	1.98
31616879--31616930	23	2.3	23	89	0	86	42	36	9	11	1.74
31625633--31625686	25	2.2	25	82	0	63	24	14	27	33	1.94
31629380--31629412	16	2.2	15	89	10	50	42	18	6	33	1.75
31633267--31633442	46	3.8	44	77	10	165	21	30	20	27	1.98
31636698--31636915	46	4.7	46	81	4	242	28	20	28	22	1.99
31636700--31636871	94	1.8	92	84	7	231	28	20	29	22	1.98
31636699--31636944	46	5.3	46	77	12	128	29	19	27	23	1.98
31636698--31637005	92	3.3	91	73	13	243	29	19	28	23	1.98
31648887--31649031	40	3.6	40	95	1	247	22	23	28	25	1.99
31648887--31649063	80	2.2	80	87	5	243	24	22	27	25	2.00
31649290--31649333	22	2.0	21	83	16	54	31	18	13	36	1.90
31656846--31657030	40	4.6	40	94	1	309	23	22	28	25	1.99
31656842--31657062	80	2.8	79	87	4	302	26	21	26	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31659081--31659251	46	3.7	47	80	10	185	21	29	19	29	1.98
31660982--31661040	25	2.3	26	88	8	86	25	28	18	27	1.98
31662459--31662487	14	2.0	15	93	6	51	24	6	20	48	1.74
31665965--31666003	19	2.1	19	95	0	69	15	23	10	51	1.73
31667271--31667300	2	15.5	2	93	6	53	53	0	0	46	1.00
31668396--31668458	30	2.1	30	96	0	117	57	15	3	23	1.53
31671071--31671302	49	4.7	49	80	3	284	28	25	18	26	1.98
31675642--31675728	20	4.3	21	72	17	67	25	2	3	68	1.16
31675642--31675744	29	3.5	29	75	11	95	23	1	2	71	1.09
31675642--31675729	11	8.7	10	73	18	58	25	2	3	69	1.16
31676247--31676291	19	2.4	18	85	3	54	33	2	4	60	1.29
31677421--31677480	31	1.9	31	82	0	75	35	8	10	46	1.67
31682212--31682242	16	1.9	16	93	0	53	64	0	0	35	0.94
31682416--31682507	32	3.2	31	62	28	76	28	8	5	57	1.51
31682394--31682514	54	2.2	54	95	0	215	28	8	6	57	1.53
31692115--31692228	35	3.3	34	74	9	113	28	8	19	43	1.80
31699309--31699419	35	3.2	35	76	5	125	27	9	19	44	1.81
31711668--31711722	28	2.0	28	100	0	110	21	10	21	45	1.82
31716260--31716310	26	2.0	26	88	0	75	52	0	15	31	1.43
31718586--31718873	39	7.3	39	80	4	274	26	30	30	11	1.92
31718589--31718873	117	2.4	118	84	3	342	26	31	30	11	1.92
31724953--31725030	40	2.0	40	86	0	111	29	23	16	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31731307--31731528	23	9.7	23	83	5	261	24	20	24	30	1.99
31731307--31731518	46	4.6	46	89	1	309	24	21	25	29	1.99
31736473--31736538	30	2.2	30	97	0	123	22	37	24	15	1.92
31738002--31738136	43	3.2	43	67	16	118	24	26	17	31	1.97
31737984--31738177	84	2.3	84	77	9	223	26	27	18	27	1.98
31740026--31740055	15	2.1	15	93	6	53	36	26	6	30	1.82
31741633--31741808	23	7.7	23	82	5	203	25	21	24	28	1.99
31741633--31741798	46	3.6	46	86	1	226	24	22	24	28	1.99
31746837--31747048	57	3.7	57	71	5	194	34	18	15	31	1.92
31746909--31747089	58	3.1	57	71	7	177	34	19	16	30	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344