Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  322  of  344  ( 41197 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105352832--105352892
15
3.9
15
70
6
50
62
1
8
27
1.33
105352829--105352892
31
2.1
31
88
2
94
60
1
7
29
1.34
105352840--105352909
28
2.4
30
83
7
81
57
1
10
31
1.41
105353207--105353248
18
2.3
18
84
11
59
28
4
14
52
1.62
105353525--105353614
31
3.0
30
75
15
87
47
8
11
32
1.70
105354303--105354334
14
2.1
16
88
11
50
68
0
15
15
1.21
105355500--105355533
9
3.7
9
88
7
50
14
0
5
79
0.91
105355500--105355542
10
4.5
10
88
2
54
13
2
6
76
1.08
105358480--105358670
62
3.0
63
88
1
294
33
13
21
31
1.92
105362517--105362576
25
2.4
25
83
13
70
33
8
3
55
1.47
105365829--105366010
91
2.0
91
100
0
364
30
18
16
34
1.93
105368904--105368941
18
2.1
19
90
5
60
21
21
5
52
1.66
105378841--105378889
12
4.6
11
78
16
50
38
0
0
61
0.96
105380594--105380621
7
4.0
7
100
0
56
42
0
0
57
0.99
105381602--105381656
11
5.0
11
72
0
56
65
25
3
5
1.31
105381602--105381656
22
2.5
22
84
0
74
65
25
3
5
1.31
105382956--105383031
30
2.6
27
76
11
80
26
6
13
53
1.63
105383420--105383576
61
2.6
58
79
5
170
45
15
17
21
1.85
105389676--105389734
31
1.9
31
93
6
102
25
10
18
45
1.81
105391129--105391161
7
4.7
7
96
0
57
15
3
0
81
0.80
105391126--105391161
14
2.6
14
90
0
63
13
5
0
80
0.88
105393352--105393387
13
2.8
14
84
16
51
27
25
0
47
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105393339--105393379
18
2.2
19
87
12
59
29
24
0
46
1.53
105393541--105393627
21
4.0
22
74
14
90
41
25
18
14
1.89
105393914--105393971
15
3.8
15
83
2
80
51
10
0
37
1.36
105393917--105393975
30
2.0
28
93
6
100
55
10
0
33
1.33
105394127--105394156
2
15.0
2
100
0
60
50
50
0
0
1.00
105407819--105407875
30
1.9
30
92
0
96
45
3
21
29
1.68
105409213--105409257
19
2.4
18
85
3
54
57
8
2
31
1.41
105411803--105411843
20
2.0
20
86
9
57
51
0
2
46
1.14
105411921--105411946
12
2.2
12
100
0
52
42
0
15
42
1.47
105412513--105412582
11
6.4
11
73
5
52
71
4
11
12
1.28
105414293--105414336
21
2.1
21
100
0
88
59
13
9
18
1.60
105415144--105415191
25
2.0
25
88
8
73
35
2
2
60
1.20
105415511--105415550
21
1.9
21
90
10
64
32
20
0
47
1.50
105415652--105415773
3
41.3
3
72
9
63
31
7
3
57
1.42
105416315--105416578
126
2.1
126
95
0
474
36
17
14
31
1.90
105436012--105436125
51
2.2
51
95
0
201
28
23
14
33
1.94
105447270--105447354
43
2.0
43
95
0
152
36
2
23
37
1.68
105449894--105449965
35
2.1
35
100
0
144
52
8
11
27
1.65
105458325--105458350
13
2.0
13
100
0
52
38
7
15
38
1.76
105460070--105460095
13
2.0
13
100
0
52
7
38
38
15
1.76
105460331--105460409
41
1.9
41
82
10
99
21
31
26
20
1.98
105462083--105462121
16
2.4
17
87
8
55
53
0
0
46
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105463041--105463090
20
2.5
20
86
3
73
50
12
12
26
1.74
105465133--105465181
26
1.9
25
84
12
64
61
2
0
36
1.08
105465129--105465177
12
3.8
13
78
21
59
61
2
0
36
1.08
105468322--105468362
19
2.0
21
90
9
68
17
4
21
56
1.60
105469735--105469786
24
2.2
24
82
0
59
34
3
7
53
1.48
105482228--105482287
29
2.0
31
83
6
79
50
6
0
43
1.28
105496483--105496632
44
3.4
43
75
2
138
32
20
24
23
1.98
105496483--105496887
88
4.6
88
86
0
499
33
21
23
21
1.98
105497278--105497317
21
2.0
20
85
5
53
25
12
22
40
1.89
105498832--105498858
12
2.2
12
100
0
54
22
0
0
77
0.76
105503585--105503624
15
2.5
16
88
8
55
32
0
0
67
0.91
105512633--105512684
25
2.0
25
85
10
70
28
13
3
53
1.57
105513030--105513054
7
3.6
7
100
0
50
40
0
0
60
0.97
105515361--105515431
31
2.3
31
100
0
142
39
14
2
43
1.59
105519702--105519747
17
2.7
17
75
18
51
71
0
2
26
0.97
105528212--105528285
30
2.5
30
78
12
80
33
2
2
60
1.25
105528239--105528286
23
2.1
23
84
0
60
33
0
4
62
1.14
105532661--105532718
28
2.1
28
93
0
98
22
5
5
67
1.31
105532749--105532791
18
2.5
17
80
3
50
69
0
23
6
1.12
105533134--105533196
33
1.9
33
100
0
126
47
6
14
31
1.69
105533134--105533186
19
3.1
19
64
25
53
47
7
15
30
1.73
105533144--105533201
19
3.3
19
63
22
54
51
6
12
29
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105547279--105547311
11
2.9
12
86
13
52
33
0
0
66
0.92
105547312--105547352
18
2.2
20
86
8
59
63
9
2
24
1.37
105547435--105547497
30
2.1
30
90
0
99
57
12
3
26
1.51
105548845--105549078
69
3.3
72
86
4
314
47
16
10
25
1.78
105549867--105549913
23
2.1
23
88
4
69
53
6
0
40
1.27
105550702--105550745
23
1.9
23
85
0
61
47
0
4
47
1.22
105551721--105551747
14
1.9
14
100
0
54
74
7
11
7
1.23
105562047--105562202
78
2.0
78
98
0
303
41
14
7
37
1.73
105569264--105569305
22
1.9
22
85
0
57
59
14
14
11
1.61
105571148--105571177
16
1.9
16
93
6
53
43
0
16
40
1.48
105576420--105576498
23
3.4
24
68
15
76
40
15
5
39
1.69
105576405--105576496
46
2.0
46
100
0
184
41
15
6
36
1.73
105576413--105576484
21
3.2
21
67
14
63
41
15
5
37
1.70
105590614--105590656
20
2.2
20
91
8
70
48
2
4
44
1.36
105591554--105591596
16
2.5
16
85
11
50
79
0
16
4
0.90
105591705--105591773
32
2.2
32
91
0
111
13
44
17
24
1.84
105594152--105594194
17
2.4
18
84
3
52
9
16
0
74
1.06
105597148--105597177
14
2.2
14
94
5
53
26
0
6
66
1.16
105599103--105599145
17
2.6
16
82
14
52
39
2
0
58
1.11
105602502--105602581
36
2.2
36
82
8
101
52
1
8
37
1.41
105602712--105602799
3
29.3
3
88
4
133
63
1
3
31
1.18
105603830--105603898
30
2.3
29
80
9
75
4
7
46
42
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105604478--105604555
29
2.6
30
83
4
95
24
15
7
52
1.68
105609643--105609681
14
2.8
14
88
0
51
28
0
5
66
1.12
105617706--105617730
7
3.6
7
100
0
50
88
0
0
12
0.53
105620487--105620810
156
2.1
156
86
0
450
30
20
12
36
1.90
105622251--105622353
43
2.4
42
90
3
152
45
15
7
31
1.74
105624033--105624530
255
2.0
246
80
7
565
45
6
9
38
1.62
105624530--105624560
15
2.1
15
93
0
53
45
0
0
54
0.99
105626936--105626969
17
2.0
17
100
0
68
41
23
11
23
1.87
105629305--105629358
15
3.3
15
74
18
54
44
0
1
53
1.11
105630388--105630456
33
2.1
33
84
10
88
47
1
2
47
1.25
105654743--105654798
10
5.8
9
78
17
51
33
1
3
60
1.24
105654744--105654798
19
2.8
19
84
13
67
34
1
3
60
1.25
105654744--105654788
10
4.6
10
84
13
58
31
2
4
62
1.27
105656266--105656311
20
2.3
19
85
10
65
36
4
6
52
1.47
105656822--105656865
22
2.0
22
95
0
79
43
18
11
27
1.84
105659635--105659669
18
1.9
18
88
0
52
40
17
25
17
1.90
105659656--105659755
45
2.2
45
87
0
146
40
19
19
22
1.92
105659641--105659765
45
2.6
49
75
15
123
38
18
22
20
1.93
105660126--105660182
21
2.6
22
73
15
64
28
0
5
66
1.13
105660773--105660813
23
1.9
21
85
14
57
53
0
21
24
1.46
105661139--105661189
15
3.3
15
80
2
66
41
1
7
49
1.43
105663998--105664052
5
10.6
5
75
21
51
20
3
1
74
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105664534--105664575
20
2.2
19
87
12
59
57
4
0
38
1.20
105664542--105664590
12
4.2
12
76
21
50
57
2
0
40
1.10
105664563--105664600
5
7.4
5
94
5
67
57
0
0
42
0.98
105668139--105668315
54
3.3
53
79
4
185
41
1
34
23
1.62
105669801--105669891
23
4.0
24
69
15
68
59
6
2
31
1.35
105669848--105669897
17
2.9
17
80
11
57
64
6
2
28
1.28
105671468--105671604
56
2.5
57
77
12
137
52
5
8
32
1.56
105671658--105671727
36
1.9
36
82
5
88
55
4
2
37
1.34
105673605--105673637
3
10.7
3
93
6
57
66
0
3
30
1.06
105673716--105673768
23
2.4
22
81
12
56
56
3
7
32
1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344