genome.fa.s10.2.7.7.80.10.50.1000.210.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  210  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69632918--69632947	14	2.1	14	93	0	51	46	36	0	16	1.47
69640287--69640836	47	11.6	47	94	2	956	29	29	8	32	1.86
69640287--69640836	96	5.8	94	95	2	956	29	29	8	32	1.86
69640287--69640836	143	3.9	143	96	0	996	29	29	8	32	1.86
69644879--69644908	14	2.1	14	93	0	51	46	36	0	16	1.47
69644901--69644945	22	2.0	23	83	8	58	48	8	4	37	1.55
69644908--69644951	23	2.0	22	81	4	52	43	11	6	38	1.67
69650067--69650250	40	4.6	39	84	6	212	24	22	27	25	2.00
69650067--69650250	78	2.3	80	82	9	216	24	22	27	25	2.00
69664387--69664416	14	2.1	14	93	0	51	46	36	0	16	1.47
69673948--69674162	45	4.9	45	75	12	171	25	17	26	30	1.97
69677233--69677389	78	2.0	78	100	0	314	40	23	12	22	1.89
69684901--69684985	26	3.1	28	79	14	88	51	14	4	29	1.62
69684704--69685044	27	12.6	27	78	6	262	43	19	8	28	1.80
69685288--69685404	41	2.9	41	92	0	189	21	20	30	27	1.98
69685551--69685601	22	2.3	21	80	9	57	21	23	21	33	1.97
69688604--69688930	81	4.0	79	78	8	279	43	19	8	28	1.81
69688603--69688926	27	12.0	27	80	7	248	42	20	8	28	1.81
69689968--69690028	21	2.9	21	92	0	104	34	18	13	34	1.89
69689968--69690027	10	5.8	10	82	7	75	35	18	13	33	1.89
69690064--69690112	25	2.0	25	83	0	62	28	14	20	36	1.92
69691905--69691985	41	2.0	41	95	0	144	24	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69692150--69692202	22	2.4	22	72	12	54	18	24	26	30	1.98
69696922--69696990	25	2.8	24	82	8	84	27	17	28	26	1.97
69697017--69697089	25	2.9	25	81	4	85	39	16	24	19	1.91
69702946--69702992	21	2.2	21	92	0	76	59	14	12	12	1.61
69702946--69703002	21	2.7	21	86	0	60	56	14	15	14	1.68
69705015--69705075	27	2.3	27	85	5	79	34	24	22	18	1.96
69706662--69706717	26	2.2	26	96	0	103	37	25	7	30	1.82
69711961--69712066	27	3.9	27	85	9	128	34	22	24	17	1.96
69713647--69713702	26	2.2	26	96	0	103	37	25	7	30	1.82
69717031--69717064	15	2.3	15	90	10	52	35	0	11	52	1.38
69717218--69717335	46	2.6	46	93	0	191	47	11	21	19	1.81
69719117--69719168	25	2.1	25	96	0	95	46	9	3	40	1.55
69719553--69719609	20	2.8	20	83	0	69	50	17	14	17	1.77
69720513--69720570	10	5.8	10	80	7	57	63	0	15	20	1.30
69720515--69720555	11	3.8	11	83	3	57	58	0	17	24	1.38
69720515--69720589	21	3.7	21	72	13	57	68	1	13	17	1.29
69724950--69724981	16	2.0	16	93	0	55	56	0	9	34	1.32
69727038--69727095	30	1.9	29	83	13	73	41	5	5	48	1.48
69727340--69727369	11	2.7	11	94	0	51	26	6	0	66	1.16
69732706--69732926	46	4.7	47	77	10	195	28	19	28	22	1.98
69734650--69734687	18	2.1	18	95	0	67	39	10	18	31	1.85
69736241--69736278	17	2.3	17	90	4	60	73	2	10	13	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69747985--69748016	12	2.6	13	90	9	50	50	25	6	18	1.70
69755141--69755172	12	2.6	13	90	9	50	50	25	6	18	1.70
69756936--69757146	93	2.3	94	90	0	343	29	14	21	34	1.93
69759643--69759710	33	2.1	33	88	5	102	33	22	7	36	1.82
69760065--69760105	15	2.7	15	96	3	73	34	19	7	39	1.80
69764539--69764625	21	4.0	23	80	10	92	14	21	25	37	1.92
69772644--69772821	50	3.7	48	78	10	184	24	30	19	25	1.98
69772642--69772910	46	5.7	48	75	13	204	24	30	18	25	1.98
69774571--69774871	153	2.0	153	94	0	530	30	20	12	36	1.90
69787304--69787344	13	2.7	15	78	21	50	24	7	0	68	1.15
69797349--69797395	9	5.3	9	80	12	53	0	14	0	85	0.61
69802805--69802892	44	2.0	44	97	0	167	20	26	6	46	1.75
69803708--69803926	46	4.7	46	77	9	189	26	20	29	24	1.99
69826983--69827070	40	2.3	38	80	7	104	36	30	12	20	1.90
69826993--69827068	40	1.9	40	86	0	107	35	30	13	21	1.91
69828670--69829039	48	7.7	48	81	5	399	28	19	28	24	1.98
69828655--69829039	144	2.7	144	88	3	533	27	18	28	25	1.98
69851305--69851435	60	2.2	60	75	8	140	19	19	12	48	1.79
69851636--69851705	19	3.6	19	80	9	79	21	10	10	58	1.59
69851635--69851705	20	3.6	20	81	9	92	21	9	9	59	1.58
69851648--69851697	18	2.5	20	71	12	50	20	14	8	58	1.61
69851648--69851724	40	1.9	39	84	2	100	23	14	10	51	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69851474--69851943	237	2.0	237	82	7	569	37	9	10	43	1.70
69851950--69852040	40	2.2	41	79	9	98	18	14	13	53	1.72
69859010--69859085	20	3.8	20	75	6	64	15	21	14	48	1.80
69859011--69859060	21	2.5	20	78	12	57	18	22	12	48	1.80
69861254--69861314	26	2.3	26	85	0	77	26	19	13	40	1.88
69864392--69864499	36	2.9	36	76	15	112	38	10	14	36	1.80
69864402--69864499	19	5.2	19	90	7	155	38	10	15	35	1.81
69866667--69866741	6	12.5	6	92	0	78	9	20	6	64	1.46
69866697--69866749	12	4.3	12	90	2	79	15	24	0	60	1.35
69868828--69868953	43	2.8	43	79	7	110	34	19	21	24	1.96
69868828--69868953	45	2.8	44	79	7	130	34	19	21	24	1.96
69868905--69869191	138	2.1	136	83	6	346	37	14	19	27	1.91
69869637--69869849	55	3.9	55	78	8	155	52	5	16	25	1.64
69869611--69869767	84	1.9	84	82	5	201	52	5	17	24	1.65
69869611--69869853	28	8.8	27	69	6	137	53	4	16	25	1.61
69869606--69869800	84	2.3	81	80	6	194	52	5	17	24	1.66
69869627--69869800	83	2.1	82	80	6	190	54	5	16	22	1.63
69869702--69869861	55	2.9	54	83	5	169	55	3	16	25	1.58
69870962--69871103	54	2.6	54	82	7	171	45	1	2	50	1.25
69870968--69871111	27	5.4	27	71	16	79	47	1	2	47	1.25
69870963--69871087	26	4.6	25	69	20	83	46	0	3	50	1.17
69877626--69877662	17	2.1	18	90	5	58	83	0	16	0	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69880306--69880330	13	1.9	13	100	0	50	72	0	12	16	1.13
69882214--69882262	22	2.3	21	79	10	55	59	4	4	32	1.35
69883850--69883925	31	2.4	32	74	10	77	36	6	7	48	1.58
69883976--69884026	16	3.1	16	78	15	59	70	0	1	27	0.98
69884049--69884092	17	2.5	18	81	7	63	50	0	0	50	1.00
69884606--69884630	12	2.1	12	100	0	50	52	16	0	32	1.44
69892928--69892966	20	2.0	20	85	10	53	5	15	2	76	1.06
69894024--69894095	25	3.1	23	81	15	78	63	0	26	9	1.25
69896579--69896614	18	2.0	18	88	0	54	36	47	0	16	1.47
69898889--69898932	16	2.8	16	92	0	70	27	29	25	18	1.98
69898806--69898916	39	2.8	39	80	2	134	32	28	20	18	1.96
69898904--69899020	39	3.0	39	89	0	171	33	30	19	16	1.94
69898815--69899008	94	2.1	94	87	0	271	32	28	20	17	1.96
69904721--69904746	12	2.2	12	100	0	52	42	11	0	46	1.40
69912282--69912334	22	2.3	23	83	3	63	11	24	0	64	1.26
69915571--69915652	41	2.0	41	97	0	155	23	4	15	56	1.59
69919064--69919484	104	4.0	105	81	4	447	33	12	24	28	1.92
69927103--69927327	48	4.7	48	87	1	274	26	17	28	28	1.98
69930906--69930945	19	2.0	20	95	4	73	32	10	15	42	1.79
69931147--69931235	44	2.0	44	97	0	169	33	8	14	42	1.77
69931158--69931227	23	3.1	23	66	22	67	32	8	15	42	1.77
69933165--69933434	48	5.6	48	89	0	369	25	20	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69933165--69933434	97	2.8	96	84	3	335	25	20	27	26	1.99
69933165--69933436	145	1.9	144	86	0	391	25	20	28	26	1.99
69937063--69937364	131	2.3	131	84	2	374	37	12	16	32	1.87
69940645--69940707	31	2.0	32	84	9	85	49	1	3	46	1.27
69940817--69940907	39	2.2	40	80	5	103	39	2	7	50	1.43
69945151--69945196	21	2.2	21	100	0	92	32	8	30	28	1.87
69956469--69956547	37	2.1	37	90	0	122	25	31	18	24	1.98
69956666--69956939	47	5.7	47	91	2	397	28	30	8	32	1.87
69956666--69956939	96	2.9	94	89	4	397	28	30	8	32	1.87
69962219--69962424	105	2.0	105	86	3	290	33	12	24	29	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344