genome.fa.s10.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  166  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55424534--55424637	46	2.3	45	78	9	113	32	1	0	65	1.04
55427558--55427585	12	2.3	12	100	0	56	39	0	14	46	1.44
55427602--55427661	10	6.0	10	86	7	77	23	6	1	68	1.22
55428642--55428696	20	2.8	20	78	15	69	47	0	0	52	1.00
55428848--55428903	17	3.4	17	77	2	51	64	5	25	5	1.36
55429757--55429787	16	2.0	16	93	6	55	48	0	12	38	1.42
55436370--55436808	44	10.0	44	88	0	599	26	28	15	30	1.96
55458702--55458824	42	2.9	42	80	4	140	32	17	22	26	1.97
55463804--55463856	22	2.4	23	90	6	83	20	18	3	56	1.57
55468774--55468807	17	1.9	18	88	5	52	52	5	0	41	1.25
55471051--55471101	21	2.7	18	75	16	50	64	5	5	23	1.38
55471975--55472259	137	2.1	137	94	0	498	31	24	18	25	1.97
55474047--55474154	26	4.2	26	89	4	173	37	23	7	32	1.82
55474047--55474154	52	2.1	52	94	3	191	37	23	7	32	1.82
55479078--55479302	40	5.7	40	84	5	278	24	21	28	25	1.99
55479078--55479335	119	2.2	119	81	6	292	25	21	27	24	1.99
55482310--55482520	64	3.2	64	63	20	151	30	26	17	26	1.97
55482276--55482562	137	2.1	137	98	0	547	31	25	18	24	1.98
55484349--55484456	26	4.2	26	89	4	173	37	23	7	32	1.82
55484349--55484456	52	2.1	52	94	3	191	37	23	7	32	1.82
55487200--55487275	30	2.6	30	77	8	84	42	10	1	46	1.46
55488663--55488713	17	2.7	20	76	17	63	37	0	3	58	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55503214--55503391	27	6.6	27	83	3	205	26	15	28	29	1.96
55503215--55503370	82	1.9	81	88	3	233	26	15	28	29	1.96
55503211--55503391	82	2.2	81	83	2	229	27	15	27	29	1.96
55503844--55503903	10	5.9	10	84	2	57	25	6	1	66	1.25
55503844--55503901	20	2.9	20	81	0	71	24	6	1	67	1.25
55504337--55504376	18	2.2	18	100	0	80	47	15	7	30	1.72
55505097--55505228	50	2.6	51	85	3	185	36	12	15	35	1.85
55508925--55509147	40	5.6	40	86	3	236	24	21	27	26	1.99
55509000--55509182	79	2.3	80	82	1	226	25	20	27	25	1.99
55526861--55527174	46	6.6	45	73	9	202	23	30	19	26	1.98
55527004--55527177	94	1.9	92	86	4	251	22	31	20	25	1.98
55526861--55527174	140	2.2	142	84	6	395	23	30	19	26	1.98
55528008--55528129	46	2.7	45	74	15	124	25	26	18	30	1.98
55535336--55535655	46	6.8	49	72	14	165	24	30	19	26	1.98
55535482--55535652	46	3.7	45	79	6	180	22	30	19	26	1.98
55535345--55535652	140	2.2	142	83	5	374	24	29	18	26	1.98
55537478--55537594	46	2.5	46	82	6	121	23	30	18	27	1.98
55546973--55547096	47	2.6	47	96	0	221	29	30	18	20	1.97
55548860--55549173	47	6.7	46	73	13	189	24	28	17	28	1.97
55548862--55549172	93	3.3	93	80	6	301	25	29	17	28	1.97
55549052--55549171	46	2.6	46	82	7	136	25	30	17	26	1.97
55554662--55554827	67	2.5	67	94	0	287	21	28	14	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55554610--55554898	67	4.4	64	79	10	228	23	28	15	32	1.95
55554800--55554926	68	1.9	68	81	6	159	22	28	15	33	1.95
55557059--55557134	38	2.0	38	100	0	152	39	18	5	36	1.73
55559986--55560024	6	6.5	6	100	0	78	84	0	15	0	0.62
55563354--55563379	13	2.0	13	100	0	52	15	38	30	15	1.88
55566430--55566509	26	3.1	26	85	0	106	27	23	18	30	1.98
55566440--55566499	13	4.6	13	71	8	50	25	23	18	33	1.97
55573333--55573368	14	2.6	14	90	0	54	80	0	19	0	0.71
55575548--55575690	44	3.3	43	75	9	141	30	18	18	31	1.96
55575548--55575703	43	3.7	42	79	6	145	29	18	21	30	1.97
55578428--55578602	45	3.8	46	76	13	189	21	21	28	29	1.99
55586003--55586177	45	3.8	46	76	13	189	30	28	20	21	1.98
55586010--55586178	93	1.8	92	92	1	284	29	28	20	21	1.98
55588200--55588245	10	4.5	10	80	2	56	47	21	2	28	1.62
55588785--55588809	8	3.1	8	100	0	50	48	24	0	28	1.52
55600194--55603921	932	4.0	932	99	0	7323	31	17	17	33	1.93
55610005--55610053	25	2.0	25	87	0	71	34	14	18	32	1.91
55621562--55621586	13	1.9	13	100	0	50	16	4	16	64	1.44
55622289--55622409	46	2.6	46	88	5	172	28	23	27	20	1.99
55622292--55622554	49	5.5	49	73	13	185	26	21	28	22	1.99
55636446--55636621	56	3.1	56	99	0	343	44	9	23	22	1.81
55638649--55638799	28	5.4	28	92	1	223	33	28	11	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55641102--55641326	40	5.7	40	86	5	287	24	21	28	25	1.99
55641102--55641359	119	2.2	119	81	6	283	25	21	27	25	1.99
55647800--55647975	56	3.1	56	97	0	334	45	8	23	22	1.80
55649116--55649340	40	5.7	40	85	5	287	24	22	27	25	2.00
55656797--55656929	69	1.9	69	96	0	248	23	12	22	42	1.87
55656798--55656946	69	2.2	68	90	4	228	26	11	22	40	1.87
55665067--55665253	69	2.7	68	80	5	187	37	13	22	26	1.91
55666017--55666049	15	2.2	15	89	10	50	42	9	0	48	1.35
55669371--55669430	28	2.1	28	87	6	86	25	5	3	66	1.27
55674605--55675290	342	2.0	342	88	1	1025	24	20	15	38	1.92
55681769--55681800	17	1.9	16	93	6	55	18	0	9	71	1.12
55682678--55682738	23	2.6	22	72	10	59	36	18	21	24	1.95
55689202--55689266	28	2.3	28	100	0	130	15	40	21	23	1.91
55690209--55690479	47	5.8	45	77	12	210	22	29	19	28	1.98
55690218--55690481	46	5.7	46	77	14	213	23	28	19	28	1.98
55690218--55690481	140	1.9	140	83	4	345	23	28	19	28	1.98
55691157--55691186	12	2.5	12	94	0	51	23	30	30	16	1.96
55694532--55694652	43	2.9	42	84	7	172	31	16	23	28	1.96
55700951--55701008	26	2.2	26	96	0	107	24	5	34	36	1.78
55701448--55702010	48	11.8	48	79	2	495	26	19	30	24	1.98
55701448--55702006	96	5.8	96	79	1	557	26	18	30	24	1.98
55701448--55702006	192	2.9	191	90	1	814	26	18	30	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55705054--55705207	28	5.5	28	96	0	274	25	13	29	31	1.94
55709456--55709528	36	2.0	36	86	0	101	28	8	27	35	1.86
55711324--55711370	22	2.1	22	100	0	94	27	4	17	51	1.64
55712984--55713131	42	3.4	43	77	11	133	30	18	22	27	1.98
55721123--55721159	17	2.2	18	85	9	51	48	8	16	27	1.74
55721601--55721911	152	2.0	152	88	2	473	31	8	22	36	1.85
55724625--55724773	43	3.5	44	78	11	157	24	18	26	30	1.98
55734242--55734323	39	2.1	39	93	0	137	21	31	25	20	1.98
55736126--55736225	28	3.6	28	80	0	128	30	31	12	27	1.92
55736255--55736396	41	3.5	41	87	2	191	33	25	14	27	1.94
55739176--55739224	24	2.1	23	85	11	64	30	0	24	44	1.54
55742571--55742619	23	2.1	23	88	0	71	18	22	0	59	1.38
55747343--55747382	20	2.0	20	95	0	71	25	22	15	37	1.93
55756792--55756949	43	3.7	43	82	4	185	31	25	17	25	1.97
55759017--55759503	85	6.0	79	72	12	297	33	13	9	43	1.76
55759117--55759512	85	4.7	85	78	6	401	33	13	10	42	1.78
55764225--55764290	6	11.0	6	70	0	51	57	15	4	22	1.56
55770527--55770726	96	2.1	96	87	0	285	35	14	19	31	1.92
55773393--55773567	49	3.5	49	81	3	233	30	25	17	26	1.97
55773385--55773572	100	1.9	100	94	0	331	29	25	19	25	1.98
55773715--55773768	27	2.0	27	85	0	72	38	14	7	38	1.75
55776536--55776662	36	3.6	35	71	18	100	31	22	21	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55776536--55776751	70	3.1	69	86	6	276	31	21	21	25	1.98
55781998--55782037	18	2.2	19	90	4	64	32	0	10	57	1.32
55788079--55788132	17	3.1	17	78	7	54	25	33	18	22	1.97
55792568--55792750	79	2.3	81	83	7	223	24	27	22	24	2.00
55792547--55792750	40	5.1	40	81	8	229	24	27	22	25	2.00
55794543--55794580	10	3.8	10	83	13	51	26	15	28	28	1.96
55794545--55794591	20	2.3	20	88	0	67	23	14	34	27	1.94
55796087--55796130	18	2.8	16	83	16	56	9	38	0	52	1.33
55797097--55797139	11	3.8	11	79	14	52	6	9	6	76	1.15
55797060--55797163	26	4.1	23	79	15	93	12	10	5	71	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344