Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  332  of  344  ( 41197 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107947568--107947934
52
7.2
52
85
7
461
28
22
13
34
1.93
107947568--107947926
98
3.6
98
90
2
520
28
22
13
34
1.92
107947579--107947940
150
2.4
144
91
5
571
29
22
14
34
1.93
107952114--107952585
130
3.6
130
76
5
407
27
17
16
37
1.92
107954521--107954685
3
55.0
3
68
14
74
29
9
1
60
1.35
107954497--107954589
44
2.1
44
85
0
123
33
10
1
54
1.42
107961581--107961718
39
3.5
39
92
0
222
14
26
21
37
1.92
107969306--107969487
20
9.2
21
66
22
99
13
23
21
41
1.88
107969288--107969505
39
5.6
39
92
0
328
13
24
22
39
1.90
107972816--107972849
10
3.5
10
96
4
61
58
32
0
8
1.29
107977076--107977215
3
46.0
3
74
13
101
27
6
1
65
1.26
107978283--107978346
13
4.9
13
82
0
83
29
7
26
35
1.85
107979102--107979270
86
2.0
85
94
1
293
47
5
14
32
1.66
107987433--107987489
3
19.0
3
78
7
53
36
5
0
57
1.21
107987533--107987628
48
2.0
46
84
9
122
36
3
4
56
1.34
107987656--107987685
14
2.1
14
93
0
51
33
10
0
56
1.32
107987743--107987791
23
2.2
22
85
3
62
32
4
4
59
1.35
107987760--107987805
23
2.0
23
87
8
67
32
0
4
63
1.14
107987908--107987941
16
2.1
16
94
0
59
35
0
0
64
0.94
107987843--107988022
86
2.1
89
80
9
201
36
3
5
55
1.40
107988117--107988271
25
6.1
25
77
12
129
32
7
4
56
1.47
107989606--107989643
20
1.9
20
100
0
76
44
15
7
31
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107990006--107990073
31
2.3
32
75
14
74
44
10
17
27
1.81
107993354--107993389
17
2.1
18
89
5
56
36
2
33
27
1.72
108000026--108000082
26
2.1
27
81
15
66
31
1
3
63
1.22
108007423--108007485
23
2.8
22
73
22
67
57
6
0
36
1.24
108007950--108008011
21
3.0
22
77
15
69
35
46
0
17
1.49
108008059--108008152
46
2.0
46
89
0
143
42
24
3
29
1.70
108008075--108008155
21
3.7
21
71
12
72
44
24
2
28
1.67
108008324--108008450
40
3.1
40
83
7
150
16
20
22
40
1.91
108012679--108012876
92
2.2
92
89
0
297
25
15
25
34
1.94
108012695--108012927
92
2.5
91
79
6
220
25
15
23
35
1.94
108012771--108013140
132
2.8
132
92
0
598
25
16
24
33
1.95
108013435--108013512
37
2.1
37
85
4
104
17
0
29
52
1.45
108013474--108013522
22
2.2
21
79
10
53
20
0
26
53
1.46
108013485--108013528
22
2.0
22
86
0
61
15
0
34
50
1.45
108013446--108013527
37
2.2
37
82
8
96
17
0
30
52
1.45
108014141--108014407
47
5.7
47
94
0
453
35
16
14
33
1.89
108017169--108017212
6
6.8
6
89
2
52
31
0
2
65
1.05
108017359--108017550
36
5.3
35
79
9
206
25
22
15
37
1.93
108017359--108017551
73
2.6
73
84
3
262
25
22
15
37
1.93
108017569--108017594
12
2.2
12
100
0
52
7
15
30
46
1.74
108017618--108017745
41
3.1
40
91
4
193
33
22
22
21
1.97
108017762--108017866
54
1.9
54
80
3
122
50
29
2
17
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108018535--108018617
14
5.8
14
73
9
69
49
21
3
25
1.66
108018535--108018617
29
2.9
28
83
3
85
49
21
3
25
1.66
108019090--108019177
8
10.9
8
77
13
65
70
2
0
27
0.99
108019116--108019174
7
8.0
7
81
10
64
74
1
0
23
0.91
108019114--108019173
15
4.0
15
81
14
70
76
1
0
21
0.87
108019114--108019177
23
2.8
23
90
2
103
75
1
0
23
0.90
108020970--108021012
15
2.9
15
86
6
52
81
2
16
0
0.79
108023620--108023658
19
2.1
18
85
4
51
23
2
5
69
1.21
108023649--108023696
20
2.4
21
82
10
64
22
2
6
68
1.23
108024146--108024233
38
2.4
36
83
12
108
25
19
15
39
1.91
108024664--108024742
40
2.0
40
100
0
158
44
15
12
27
1.82
108025414--108025848
142
3.0
144
93
2
750
40
16
18
25
1.91
108027863--108027894
14
2.2
15
94
5
57
15
9
0
75
1.05
108040430--108040455
11
2.4
11
100
0
52
34
7
19
38
1.80
108041588--108041660
10
7.5
10
72
25
50
32
1
1
64
1.11
108041588--108041652
19
3.4
19
72
21
55
30
1
1
66
1.10
108042246--108042314
21
3.4
21
71
15
72
36
1
7
55
1.37
108042301--108042331
15
2.1
14
94
5
53
35
3
6
54
1.42
108047271--108047306
18
1.9
19
88
5
56
19
19
30
30
1.96
108050990--108051211
3
76.0
3
73
12
133
62
0
7
29
1.28
108051040--108051217
28
6.1
29
71
17
93
63
0
7
28
1.26
108051186--108051279
27
3.5
26
75
8
82
56
3
10
29
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108051422--108051453
3
10.7
3
100
0
64
65
0
0
34
0.93
108056482--108056525
22
2.0
22
82
8
54
13
22
6
56
1.61
108059860--108059924
9
7.2
9
75
10
53
70
0
9
20
1.13
108059858--108059924
24
2.5
29
79
13
81
70
0
8
20
1.14
108060500--108060592
38
2.4
37
80
8
98
58
4
6
31
1.43
108060454--108060641
35
5.4
35
73
9
143
60
2
6
30
1.33
108060446--108060717
24
11.0
24
68
17
110
58
2
9
30
1.42
108060026--108060641
3
206.7
3
66
14
188
58
1
9
30
1.40
108060827--108060871
3
15.3
3
86
13
67
66
0
0
33
0.92
108066334--108066385
26
1.9
28
84
7
72
69
1
0
28
0.99
108070313--108070346
16
2.2
15
89
5
50
61
0
0
38
0.96
108070322--108070359
18
2.1
18
90
0
58
52
2
0
44
1.14
108071085--108071141
7
7.7
7
73
11
51
42
24
3
29
1.71
108071087--108071147
29
2.1
30
87
3
88
39
21
4
34
1.75
108075688--108075727
14
2.9
13
85
10
53
40
20
2
37
1.66
108079740--108079998
73
3.5
73
98
0
491
40
24
6
28
1.79
108082643--108082691
25
2.0
25
95
0
89
34
18
16
30
1.93
108083143--108083187
23
2.0
23
86
0
63
60
0
6
33
1.23
108085128--108085164
15
2.5
15
100
0
74
43
16
8
32
1.77
108086001--108086046
21
2.1
22
88
11
69
17
13
2
67
1.33
108097414--108097677
129
2.0
135
84
7
353
27
9
16
46
1.77
108107291--108107382
31
3.0
31
100
0
184
48
13
16
21
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108111248--108111298
19
2.6
19
84
12
59
45
3
3
47
1.40
108115696--108115798
50
2.1
50
100
0
206
47
9
9
33
1.69
108117051--108117117
29
2.4
29
80
7
77
25
8
11
53
1.66
108117216--108117275
23
2.6
23
86
5
77
65
0
1
33
1.03
108121216--108121252
17
2.1
18
95
5
67
81
0
2
16
0.81
108121222--108121246
12
2.1
12
100
0
50
84
0
0
16
0.63
108124198--108124279
21
3.8
21
93
3
137
31
28
25
14
1.95
108124187--108124292
42
2.5
41
84
6
142
33
26
23
16
1.95
108124663--108124720
15
3.8
15
88
2
89
51
12
0
36
1.39
108125024--108125100
5
15.2
5
98
1
145
58
0
0
41
0.98
108125123--108125151
8
3.6
8
100
0
58
62
0
0
37
0.96
108127973--108128009
17
2.1
18
95
5
67
81
0
2
16
0.81
108127979--108128003
12
2.1
12
100
0
50
84
0
0
16
0.63
108138209--108138262
11
5.0
11
86
4
74
29
5
46
18
1.72
108142311--108142364
18
3.1
18
86
5
76
35
14
20
29
1.93
108142896--108142949
11
5.0
11
81
4
65
31
5
44
18
1.73
108150453--108150513
29
2.1
30
81
9
72
27
14
6
50
1.68
108151332--108151383
26
2.0
25
85
10
70
1
28
0
69
0.99
108151325--108151388
30
2.1
31
83
11
80
1
28
0
70
0.97
108156960--108156994
12
2.8
13
91
8
56
34
0
0
65
0.93
108156995--108157041
18
2.6
18
77
16
51
65
12
0
21
1.25
108157118--108157175
30
1.9
30
86
6
82
56
12
3
27
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108158940--108158995
28
2.0
28
96
0
103
19
7
19
53
1.68
108159862--108159902
21
2.0
20
95
4
73
29
26
19
24
1.98
108161260--108161426
43
3.9
43
74
6
151
32
22
14
30
1.94
108166621--108166687
29
2.3
29
80
7
75
52
2
0
44
1.16
108167054--108167108
26
2.1
26
96
0
101
34
3
23
38
1.73
108168728--108168867
27
5.2
27
86
2
174
17
23
22
35
1.95
108168728--108168867
54
2.6
55
87
2
194
17
23
22
35
1.95
108173836--108174077
121
2.0
121
87
3
353
40
10
7
41
1.68
108175358--108175556
87
2.3
87
82
0
236
34
15
22
28
1.94
108176706--108176816
29
3.8
29
70
5
80
25
18
18
36
1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344