Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  340  of  344  ( 41197 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110427128--110427160
10
3.4
10
87
4
50
33
0
0
66
0.92
110434787--110434848
17
3.5
17
82
8
79
38
11
11
38
1.77
110440615--110440697
11
7.5
11
75
12
71
81
0
15
2
0.78
110440618--110440697
17
4.8
16
79
15
81
81
0
16
2
0.80
110440615--110440691
24
3.2
24
84
15
90
81
0
15
2
0.79
110440617--110440697
23
3.6
23
80
14
89
81
0
16
2
0.80
110441636--110441778
43
3.3
43
71
14
132
33
22
19
24
1.97
110441625--110441833
87
2.5
85
85
7
291
32
23
21
22
1.98
110441958--110443085
207
5.5
207
92
0
1828
30
17
22
29
1.97
110443488--110443621
35
3.8
36
91
3
200
37
11
13
38
1.80
110443488--110443621
18
7.4
18
88
5
191
37
11
13
38
1.80
110443480--110443621
53
2.6
52
91
6
212
37
10
14
38
1.80
110445192--110445258
30
2.2
30
94
2
116
59
11
7
20
1.56
110450107--110450140
15
2.3
15
100
0
68
55
11
20
11
1.67
110451006--110451045
3
13.0
3
94
5
71
65
0
0
35
0.93
110462559--110462590
5
6.6
5
92
7
57
18
0
0
81
0.70
110462559--110462589
14
2.2
14
100
0
62
19
0
0
80
0.71
110465582--110465664
41
2.0
41
100
0
166
26
7
21
44
1.78
110467051--110467082
5
6.6
5
92
7
57
18
0
0
81
0.70
110467051--110467081
9
3.3
9
91
8
53
19
0
0
80
0.71
110469394--110469429
17
2.1
17
89
0
54
5
30
0
63
1.17
110472939--110473048
38
2.9
38
88
0
157
18
23
16
41
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110474166--110474349
46
4.0
46
89
1
253
21
23
14
40
1.90
110474321--110474377
28
2.0
28
100
0
114
28
24
7
40
1.81
110474275--110474423
74
2.0
74
98
0
289
26
24
11
38
1.89
110484092--110484127
17
2.1
17
89
0
54
33
0
0
66
0.92
110484096--110484129
14
2.5
14
90
4
52
35
0
0
64
0.94
110501617--110501713
18
5.4
18
83
0
131
34
17
20
27
1.95
110501619--110501713
36
2.6
36
89
0
145
33
17
21
27
1.96
110505189--110505259
33
2.2
33
94
0
124
39
5
14
40
1.69
110510147--110510187
21
2.0
21
90
0
64
29
21
29
19
1.98
110525126--110525188
31
2.0
31
100
0
126
38
3
33
25
1.72
110526732--110526762
11
2.8
11
95
0
53
19
48
3
29
1.64
110527313--110527363
18
2.8
18
90
0
75
29
25
13
31
1.94
110531417--110531447
11
2.8
11
95
0
53
19
48
3
29
1.64
110534405--110534573
39
4.3
38
87
1
194
36
10
31
21
1.88
110537670--110539075
142
9.9
142
82
7
1691
33
9
22
35
1.86
110537671--110539075
281
5.0
281
86
5
1786
33
9
22
35
1.86
110540378--110540516
75
1.9
75
90
0
224
28
21
13
35
1.92
110544242--110544439
99
2.0
99
93
1
335
32
12
19
35
1.89
110545463--110545798
168
2.0
167
95
0
609
25
17
13
43
1.86
110550053--110550101
14
3.6
14
72
10
57
12
16
16
55
1.70
110550051--110550105
26
2.1
26
100
0
110
18
14
16
50
1.77
110551131--110551214
33
2.5
34
80
5
91
35
2
32
29
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110551643--110551693
15
3.4
15
81
10
59
37
7
0
54
1.29
110553982--110554015
16
2.1
16
88
5
50
44
0
2
52
1.16
110558233--110558721
189
2.6
189
85
3
653
33
20
18
27
1.96
110561632--110561690
23
2.7
21
74
23
59
50
3
10
35
1.53
110561940--110561990
3
17.0
3
88
8
77
66
1
0
31
1.03
110570737--110570771
3
11.7
3
87
0
52
0
40
0
60
0.97
110572673--110572759
44
2.0
44
97
0
165
36
12
16
34
1.86
110573678--110574221
189
2.9
187
83
6
648
31
19
18
30
1.96
110576377--110576456
25
3.3
25
68
16
78
56
7
1
35
1.36
110576365--110576456
47
2.0
47
97
0
175
53
7
2
36
1.42
110581483--110581721
41
5.8
41
87
6
290
27
20
24
27
1.99
110581493--110581721
123
1.9
123
85
7
322
27
19
24
27
1.99
110601389--110601424
18
1.9
19
94
5
65
33
0
0
66
0.92
110601389--110601435
18
2.6
18
86
6
51
31
2
0
65
1.04
110602853--110602896
18
2.4
19
81
14
56
50
0
2
47
1.13
110603008--110603032
10
2.5
10
100
0
50
84
0
0
16
0.63
110603152--110603264
9
12.3
9
71
16
72
31
2
1
63
1.18
110603155--110603247
48
1.9
48
82
8
118
31
2
2
64
1.17
110603231--110603283
27
2.0
27
85
7
72
41
1
0
56
1.10
110603486--110603545
30
2.0
30
100
0
120
33
10
20
36
1.86
110604271--110604340
34
2.1
34
100
0
140
40
8
14
37
1.76
110606566--110606604
17
2.3
16
86
8
51
15
10
0
74
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110613218--110613261
21
2.0
22
91
4
72
34
11
15
38
1.84
110614809--110614837
5
6.0
5
92
8
51
79
0
0
20
0.74
110615247--110615311
26
2.6
25
73
22
64
49
3
10
36
1.53
110615344--110615405
3
21.0
3
72
21
51
62
1
4
30
1.25
110616828--110616945
44
2.7
44
74
11
116
24
23
23
27
2.00
110617079--110617291
86
2.5
86
89
2
331
23
22
23
30
1.99
110617460--110617615
44
3.6
42
76
7
141
26
23
19
30
1.98
110617547--110617872
87
3.8
86
69
16
244
28
21
19
31
1.97
110617581--110617872
87
3.4
86
70
13
269
28
21
19
31
1.97
110617498--110617979
44
11.3
43
68
15
191
27
21
19
31
1.97
110617678--110617954
83
3.3
83
70
14
269
28
20
19
31
1.97
110617581--110617955
170
2.2
170
95
0
678
27
21
19
31
1.97
110619098--110619144
21
2.2
21
88
0
67
25
38
10
25
1.88
110622304--110622352
19
2.5
20
80
6
57
42
12
18
26
1.85
110624203--110624231
5
6.0
5
92
8
51
79
0
0
20
0.74
110624641--110624705
26
2.6
25
73
22
64
49
3
10
36
1.53
110626519--110626570
24
2.2
24
89
0
77
55
9
1
32
1.43
110628950--110629073
34
3.6
34
80
4
124
32
12
16
39
1.85
110634525--110634589
30
2.2
30
83
5
78
53
1
3
41
1.25
110635688--110635766
28
2.8
28
71
19
74
54
5
0
40
1.22
110635923--110635959
19
1.9
19
88
0
56
54
2
0
43
1.14
110636991--110637073
10
8.5
10
69
15
57
36
4
0
59
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110636989--110637043
9
5.9
9
75
8
56
36
1
0
61
1.06
110636989--110637073
39
2.2
39
81
10
95
36
4
0
58
1.19
110638186--110638276
3
30.3
3
100
0
182
0
32
0
67
0.91
110642634--110642792
46
3.5
46
88
0
228
18
20
15
45
1.85
110642768--110642893
45
2.8
45
82
0
162
22
22
16
38
1.93
110644905--110644963
30
1.9
31
86
3
84
32
16
1
49
1.56
110644905--110644973
30
2.3
31
82
7
79
31
15
4
47
1.65
110656954--110657000
24
2.0
24
83
8
60
27
0
2
70
0.99
110661308--110661340
13
2.4
14
90
5
50
36
0
0
63
0.95
110661294--110661333
21
2.0
20
85
5
53
40
2
0
57
1.12
110662314--110662489
37
4.8
37
96
0
298
39
13
21
26
1.90
110662452--110662575
46
2.8
46
91
3
200
33
16
22
27
1.96
110663923--110663957
13
2.8
13
95
4
63
40
22
8
28
1.84
110668714--110668785
35
2.1
35
94
0
126
31
23
4
40
1.74
110674437--110674471
3
11.7
3
100
0
70
68
0
0
31
0.90
110683088--110683147
31
1.9
31
93
0
102
56
6
10
26
1.57
110687804--110687839
6
6.3
6
87
12
58
50
13
0
36
1.43
110687804--110687834
16
1.9
16
100
0
62
51
12
0
35
1.40
110700161--110700197
18
2.1
17
95
5
65
10
35
8
45
1.69
110700795--110701025
40
5.7
40
79
8
268
22
21
26
29
1.99
110700795--110701030
82
2.9
82
99
0
463
21
21
26
30
1.98
110701000--110701180
44
4.2
44
64
8
118
26
24
18
29
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110700993--110701268
132
2.1
130
83
2
347
26
24
20
28
1.99
110701790--110702056
130
2.1
130
89
1
410
24
27
19
28
1.99
110702118--110703139
132
7.7
132
94
0
1785
29
26
16
28
1.97
110703514--110703710
108
1.8
108
92
0
331
47
10
16
24
1.78
110704495--110704549
12
5.0
10
77
18
56
3
3
12
80
0.98
110705801--110705984
62
3.0
62
93
0
314
33
4
20
41
1.73
110709274--110709310
18
2.1
17
95
5
65
10
35
8
45
1.69
110713361--110713414
16
3.4
16
75
10
56
25
3
16
53
1.59
110717963--110718014
23
2.3
23
82
0
59
30
0
7
61
1.24
110720665--110720928
40
6.6
40
87
3
320
24
27
23
23
2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344