genome.fa.s10.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  138  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46321377--46321570	27	7.2	27	92	0	280	42	20	13	24	1.87
46333296--46333610	46	7.0	47	85	8	395	33	9	30	25	1.89
46333342--46333420	25	3.3	25	65	22	69	32	10	27	29	1.89
46333296--46333610	93	3.5	94	82	10	395	33	9	30	25	1.89
46333589--46333725	46	3.0	46	84	0	175	36	10	29	24	1.88
46350608--46350652	21	2.1	21	100	0	90	15	26	8	48	1.74
46352605--46352636	2	16.0	2	100	0	64	50	0	50	0	1.00
46360798--46360860	31	2.0	31	90	0	99	55	4	4	34	1.42
46362422--46362471	22	2.3	22	86	3	75	64	20	8	8	1.46
46362458--46362488	11	2.8	11	95	0	53	64	12	9	12	1.50
46366855--46366914	27	2.3	26	85	2	75	35	20	23	21	1.96
46374656--46374717	27	2.3	27	97	0	115	45	0	29	25	1.54
46375377--46375460	42	2.0	42	100	0	168	33	4	14	47	1.65
46377516--46377595	40	2.0	40	100	0	160	25	10	15	50	1.74
46378029--46378068	15	2.6	15	96	4	71	35	30	7	27	1.84
46380056--46380152	47	2.1	47	96	0	176	39	12	18	29	1.87
46385968--46386079	46	2.4	46	83	0	125	17	25	16	39	1.91
46396744--46396911	46	3.7	45	89	1	219	21	25	12	41	1.88
46396744--46396911	92	1.8	92	86	0	246	21	25	12	41	1.88
46401081--46401168	33	2.6	34	82	5	99	28	20	20	30	1.98
46403078--46404974	947	2.0	948	97	0	3564	29	14	21	34	1.93
46407742--46407785	21	2.1	21	83	8	54	25	9	2	63	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46408508--46408599	28	3.3	28	90	0	139	20	16	34	28	1.94
46408915--46409360	27	16.6	27	84	4	476	38	20	9	30	1.86
46409288--46409402	27	4.3	27	77	8	83	37	18	14	29	1.91
46410891--46410954	30	2.2	29	94	2	110	25	18	25	31	1.98
46429563--46429782	40	5.5	40	77	11	150	28	27	20	24	1.99
46432939--46433116	27	6.6	27	84	3	205	29	28	15	26	1.96
46432960--46433115	82	1.9	81	88	3	233	29	28	15	26	1.96
46432939--46433130	82	2.3	83	77	11	216	30	27	14	28	1.95
46436315--46436437	27	4.7	26	72	9	88	38	24	10	26	1.88
46436315--46436466	26	5.7	27	75	10	102	39	24	9	26	1.86
46436459--46436653	27	7.2	27	83	5	214	32	22	5	40	1.76
46436459--46436653	54	3.6	54	88	2	266	32	22	5	40	1.76
46436459--46436653	81	2.4	81	83	4	248	32	22	5	40	1.76
46436890--46436941	27	2.0	26	84	3	68	17	26	21	34	1.95
46436871--46437009	69	2.0	68	84	2	181	20	28	19	31	1.97
46436978--46437036	27	2.2	27	87	3	84	27	23	13	35	1.92
46437156--46437204	6	8.0	6	78	13	55	18	16	16	48	1.81
46437156--46437228	31	2.4	31	88	0	101	20	19	12	47	1.81
46438751--46438928	27	6.6	27	85	3	214	29	28	15	26	1.96
46438772--46438927	82	1.9	81	88	3	233	29	28	15	26	1.96
46439479--46439503	13	1.9	13	100	0	50	32	16	20	32	1.94
46446791--46446968	27	6.6	27	83	3	205	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46446812--46446967	82	1.9	81	86	3	224	29	27	15	27	1.96
46447519--46447543	13	1.9	13	100	0	50	32	16	20	32	1.94
46450046--46450167	27	4.5	27	81	0	127	28	27	15	27	1.96
46453371--46453493	27	4.7	26	68	13	72	38	23	10	27	1.88
46453515--46453709	27	7.2	27	82	5	196	32	22	5	40	1.76
46453515--46453709	54	3.6	54	85	2	248	32	22	5	40	1.76
46453515--46453709	81	2.4	81	85	0	255	32	22	5	40	1.76
46453946--46453997	27	2.0	26	84	3	68	17	26	21	34	1.95
46453927--46454065	69	2.0	68	86	2	190	20	28	20	31	1.97
46454034--46454092	27	2.2	26	84	3	73	25	23	15	35	1.94
46454212--46454260	6	8.0	6	78	13	55	18	16	16	48	1.81
46454212--46454284	31	2.4	31	85	0	92	20	17	12	49	1.79
46458301--46458430	47	2.8	47	86	2	181	25	16	26	32	1.96
46476490--46476557	29	2.4	28	76	16	68	45	4	0	50	1.22
46476490--46476552	14	4.4	14	76	18	58	46	4	0	49	1.23
46491997--46492173	37	4.6	38	77	9	148	24	22	27	25	2.00
46498687--46498734	25	1.9	25	86	0	69	75	2	16	6	1.11
46499326--46499413	37	2.4	37	100	0	176	29	14	22	32	1.94
46500013--46500195	40	4.6	40	82	8	196	24	22	28	25	1.99
46500068--46500230	79	2.1	79	81	6	188	26	20	28	25	1.99
46505466--46505504	21	1.9	20	85	15	53	20	25	35	17	1.95
46506606--46506723	40	2.9	40	94	1	200	33	24	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46508059--46508102	23	1.9	24	90	9	74	54	0	20	25	1.45
46511197--46511235	10	3.8	10	93	6	69	33	17	17	30	1.94
46511196--46511235	21	1.9	21	100	0	80	35	17	17	30	1.93
46511280--46511349	25	2.8	25	91	0	104	27	24	22	25	2.00
46511305--46511376	25	3.0	24	78	13	67	29	20	22	27	1.99
46516492--46516669	27	6.6	27	82	6	180	28	15	26	29	1.96
46516489--46516669	82	2.2	81	84	2	238	28	15	26	29	1.96
46522537--46522728	50	3.8	50	82	1	224	26	18	25	30	1.98
46522539--46522726	99	1.9	101	85	2	263	25	18	25	30	1.98
46524893--46524942	21	2.4	21	100	0	100	34	18	18	30	1.94
46524892--46524942	11	4.8	11	92	7	88	35	17	17	29	1.93
46524987--46525053	25	2.7	25	95	0	116	29	26	20	22	1.99
46526257--46526282	8	3.2	8	100	0	52	88	0	0	11	0.52
46526834--46526877	18	2.4	18	96	0	79	40	18	6	34	1.77
46543946--46544123	51	3.5	51	87	4	236	28	29	14	28	1.95
46546159--46546226	27	2.5	27	80	2	82	27	8	13	50	1.71
46548496--46548581	27	3.2	27	93	1	147	32	15	22	30	1.94
46550034--46550107	28	2.7	26	71	21	62	43	21	17	17	1.88
46558499--46558572	29	2.6	28	83	8	96	29	36	12	21	1.90
46561889--46562113	40	5.6	39	82	2	207	25	24	27	22	2.00
46561889--46562113	80	2.8	80	82	3	256	25	24	27	22	2.00
46568391--46568422	7	4.7	7	96	3	57	15	9	0	75	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46568929--46568992	22	3.0	22	77	9	60	40	21	0	37	1.54
46570360--46570423	32	2.0	32	100	0	128	43	3	15	37	1.63
46576736--46576775	21	2.0	21	90	5	64	20	27	40	12	1.88
46577981--46578335	46	7.5	46	75	11	197	25	28	18	27	1.98
46578130--46578343	94	2.3	92	81	8	258	25	29	19	26	1.98
46587510--46587534	13	1.9	13	100	0	50	32	0	20	48	1.50
46593488--46593567	27	3.0	27	88	0	124	26	15	17	41	1.88
46594917--46595141	48	4.7	48	90	0	333	28	17	31	23	1.97
46594951--46595075	25	5.2	24	61	21	55	29	16	29	24	1.96
46594919--46595187	96	2.8	95	86	3	333	27	18	30	23	1.98
46594917--46595188	48	5.7	46	88	5	267	27	18	30	23	1.97
46594917--46595188	144	1.9	144	83	3	350	27	18	30	23	1.97
46600813--46600995	79	2.3	81	82	7	214	25	26	22	25	2.00
46600792--46600995	40	5.1	40	80	8	220	25	26	22	25	2.00
46608916--46609096	79	2.3	80	82	8	217	25	28	22	24	1.99
46608895--46609098	40	5.1	40	81	8	229	25	27	22	24	1.99
46611319--46611486	40	4.2	40	82	8	148	27	27	20	24	1.99
46611356--46611486	40	3.3	40	89	2	201	28	27	20	23	1.99
46611319--46611539	80	2.8	80	79	11	229	26	27	21	24	1.99
46612552--46612580	10	2.9	10	100	0	58	0	10	6	82	0.83
46619236--46619455	79	2.8	77	80	7	237	26	27	21	24	1.99
46619236--46619402	39	4.2	39	80	8	178	26	28	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46620468--46620496	10	2.9	10	100	0	58	0	10	6	82	0.83
46625620--46625653	3	11.7	3	90	6	52	32	0	29	38	1.58
46629973--46630020	21	2.3	21	92	0	78	25	18	54	2	1.55
46630314--46630603	43	6.7	43	84	3	350	25	19	23	31	1.98
46630315--46630603	86	3.3	86	87	0	398	25	19	23	31	1.98
46630314--46630603	130	2.2	128	85	2	382	25	19	23	31	1.98
46633423--46633543	43	2.9	42	78	11	147	27	17	26	28	1.97
46635614--46635813	27	7.4	27	86	0	274	36	18	21	24	1.95
46641033--46641071	18	2.2	18	86	9	53	61	0	7	30	1.24
46655788--46655947	43	3.8	42	76	16	141	34	25	16	23	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344