genome.fa.s10.2.7.7.80.10.50.1000.196.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  196  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65359284--65359332	18	2.8	17	79	14	55	30	12	22	34	1.91
65362120--65362235	40	2.9	39	76	8	117	21	21	29	27	1.99
65367709--65367766	30	1.9	30	96	0	107	44	12	13	29	1.80
65368727--65368817	40	2.3	38	83	7	128	34	32	18	14	1.91
65368737--65368815	40	2.0	40	94	0	140	34	32	17	15	1.91
65379247--65379522	48	5.8	48	87	0	374	23	16	31	28	1.96
65379247--65379522	144	1.9	144	88	1	419	23	16	31	28	1.96
65382890--65382929	19	2.1	19	86	9	55	57	5	2	35	1.34
65384171--65384210	19	2.1	19	90	9	64	57	5	0	37	1.21
65385301--65385438	41	3.4	42	82	7	151	28	14	25	31	1.95
65387467--65387615	49	3.0	48	71	18	135	29	16	25	28	1.97
65387467--65387647	98	1.9	97	82	5	231	31	17	24	26	1.97
65396213--65396297	42	2.0	42	88	0	125	20	23	21	35	1.96
65399530--65399575	22	2.1	22	91	0	74	63	15	10	10	1.53
65403752--65403822	27	2.5	28	76	13	74	53	2	5	38	1.39
65427045--65427215	93	1.8	93	93	0	297	27	29	21	21	1.99
65427037--65427212	46	3.8	46	79	12	207	28	28	21	21	1.98
65429966--65430018	26	2.0	26	100	0	106	33	16	18	30	1.94
65436140--65436164	11	2.3	11	100	0	50	76	8	0	16	1.02
65436143--65436199	29	2.0	29	86	6	80	64	3	3	28	1.26
65436053--65436201	10	15.6	9	68	15	52	63	2	3	30	1.24
65436454--65436501	21	2.3	21	85	3	71	43	2	0	54	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65438171--65438207	17	2.2	17	100	0	74	32	10	13	43	1.79
65440325--65440407	33	2.6	32	81	5	89	21	26	13	38	1.90
65442043--65442082	2	20.0	2	100	0	80	0	50	0	50	1.00
65454782--65454811	15	1.9	16	93	6	53	16	20	10	53	1.71
65455082--65455142	30	2.0	30	100	0	122	34	26	16	22	1.95
65464114--65464148	18	1.9	18	100	0	70	14	17	11	57	1.66
65464953--65465031	25	3.2	25	85	0	113	13	35	31	18	1.91
65467298--65467357	30	2.0	30	100	0	120	36	23	13	26	1.92
65473093--65473213	34	3.6	33	77	5	109	35	30	9	23	1.88
65478097--65478171	26	2.9	25	80	11	71	29	13	12	45	1.79
65482293--65482334	11	3.8	11	81	9	50	71	0	7	21	1.09
65482284--65482331	21	2.3	20	85	3	60	68	0	8	22	1.16
65485680--65485724	21	2.1	21	87	0	63	48	2	46	2	1.26
65500008--65500047	16	2.7	16	85	11	50	42	0	0	57	0.98
65500014--65500047	11	3.2	11	91	4	52	41	0	0	58	0.98
65500155--65500198	23	1.9	23	81	9	54	45	0	2	52	1.13
65500302--65500361	28	2.1	29	82	14	72	46	1	3	48	1.28
65500482--65500519	3	12.7	3	100	0	76	0	0	31	68	0.90
65500600--65500634	12	2.8	13	86	8	54	77	0	22	0	0.78
65508301--65508382	41	2.0	41	92	0	137	23	18	12	46	1.82
65521675--65522362	105	6.7	105	79	4	675	35	16	17	30	1.92
65521675--65522325	200	3.2	203	79	7	600	35	16	17	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65521675--65522362	305	2.2	309	83	4	834	35	16	17	30	1.92
65528143--65528185	19	2.3	19	88	4	61	41	9	6	41	1.64
65535485--65535534	21	2.4	21	80	3	57	66	4	2	28	1.21
65538066--65538093	12	2.3	12	100	0	56	39	14	0	46	1.44
65541676--65541705	15	2.0	15	93	0	51	53	10	0	36	1.35
65544635--65544720	42	2.0	43	84	6	113	24	24	36	15	1.94
65546677--65546785	54	2.0	53	89	5	166	34	3	9	52	1.51
65550940--65551085	53	2.7	53	89	4	204	30	28	15	26	1.96
65555519--65555669	53	2.8	53	87	4	196	30	27	15	26	1.96
65565435--65565517	3	27.3	3	73	20	59	65	1	3	30	1.17
65565433--65565514	12	6.5	12	76	17	69	64	1	3	30	1.18
65565435--65565517	18	4.6	18	78	14	73	65	1	3	30	1.17
65565433--65565518	27	3.3	27	72	18	74	65	1	3	30	1.17
65565965--65566014	22	2.3	22	96	0	91	14	8	52	26	1.68
65565999--65566084	38	2.3	38	93	0	145	24	12	46	16	1.82
65566334--65567181	44	19.3	44	77	8	687	26	25	18	30	1.98
65566333--65567123	176	4.5	175	84	5	841	26	25	18	29	1.98
65567239--65567431	68	2.8	68	87	1	262	27	22	22	27	1.99
65567622--65567740	61	1.9	64	89	8	192	36	13	16	32	1.88
65571738--65571784	19	2.5	20	89	6	71	42	6	21	29	1.77
65574594--65574676	3	27.3	3	73	20	59	65	1	3	30	1.17
65574594--65574673	12	6.8	12	75	12	76	65	1	3	30	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65575123--65575172	22	2.3	22	100	0	100	12	8	54	26	1.64
65576393--65576438	16	2.6	17	86	10	58	23	8	6	60	1.49
65577148--65577444	131	2.3	130	79	4	303	26	18	19	36	1.94
65583765--65584177	205	2.0	205	97	0	772	40	7	18	33	1.78
65584298--65584445	51	2.9	51	86	1	199	28	12	25	33	1.93
65584305--65584521	50	4.3	51	84	4	253	27	12	26	33	1.93
65584305--65584521	99	2.2	102	81	5	264	27	12	26	33	1.93
65584463--65584584	42	2.9	41	87	2	154	29	13	25	31	1.93
65587552--65587590	10	4.0	10	93	6	71	69	0	0	30	0.89
65587552--65587590	19	2.1	19	100	0	78	69	0	0	30	0.89
65593304--65593391	44	1.9	47	88	6	137	39	3	5	51	1.43
65595966--65596005	22	1.9	21	85	10	55	55	0	0	45	0.99
65604813--65604852	17	2.4	17	83	8	55	60	0	2	37	1.11
65607774--65607806	15	2.2	15	94	0	57	63	0	6	30	1.18
65607791--65607838	25	2.0	25	88	12	73	70	2	10	16	1.24
65612343--65612458	61	1.9	58	82	5	142	41	3	5	50	1.42
65613385--65613443	24	2.5	25	76	20	72	33	0	5	61	1.18
65614761--65614805	19	2.3	19	85	11	56	55	2	2	40	1.24
65614957--65614986	10	3.0	10	100	0	60	60	20	20	0	1.37
65630401--65630458	29	2.0	29	83	16	75	50	1	3	44	1.29
65635042--65635096	25	2.2	25	83	3	65	40	1	9	49	1.45
65634880--65635570	265	2.5	264	82	8	786	44	5	8	40	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65637291--65637324	17	2.0	17	94	0	59	61	0	0	38	0.96
65637755--65637802	20	2.4	20	85	0	60	52	8	8	31	1.61
65642084--65642218	48	2.8	48	87	2	182	27	14	29	28	1.95
65642093--65642307	48	4.6	47	77	8	167	27	13	27	30	1.95
65642191--65642476	42	6.6	42	75	10	184	28	16	26	28	1.97
65648603--65648637	16	2.2	16	100	0	70	31	40	5	22	1.78
65649523--65649714	92	2.1	92	96	0	348	43	22	4	29	1.74
65654416--65654459	18	2.5	17	81	7	52	77	4	2	15	1.04
65655500--65655528	13	2.1	14	93	6	51	48	3	0	48	1.18
65659420--65659562	43	3.3	42	77	5	144	32	25	16	26	1.96
65659437--65659565	43	3.0	45	84	4	149	34	25	15	24	1.94
65666781--65666805	9	2.8	9	100	0	50	28	0	12	60	1.32
65667057--65667090	3	11.3	3	100	0	68	0	0	32	67	0.91
65675791--65675907	55	2.1	55	82	6	139	16	29	27	27	1.97
65681346--65681405	22	2.7	22	89	0	93	18	23	18	40	1.92
65682591--65683418	75	11.1	74	79	3	706	23	22	17	37	1.94
65684394--65684433	14	2.9	14	88	3	55	52	0	0	47	1.00
65684407--65684455	18	2.7	18	72	12	55	48	0	0	51	1.00
65684617--65684687	25	3.0	22	77	16	72	52	2	0	45	1.15
65684617--65684676	12	4.9	12	78	17	61	55	1	0	43	1.10
65684632--65684677	12	3.7	13	88	8	69	58	0	0	41	0.98
65691053--65691303	129	1.9	130	88	1	378	31	11	11	45	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65691317--65691341	13	1.9	13	100	0	50	8	8	8	76	1.18
65695918--65695971	27	2.0	27	100	0	108	25	7	25	40	1.82
65696937--65697120	101	1.8	101	85	2	262	30	17	17	34	1.93
65702125--65702162	20	1.9	20	94	0	67	31	13	7	47	1.71
65705213--65705291	40	2.0	40	97	0	149	34	12	13	39	1.83
65705296--65705329	16	2.1	17	88	5	52	41	5	23	29	1.78
65706878--65706912	18	1.9	18	94	0	61	28	14	25	31	1.95
65713979--65714030	22	2.3	23	90	6	81	21	7	21	50	1.73
65713991--65714042	21	2.5	22	84	9	65	28	11	17	42	1.84
65715608--65715634	11	2.5	11	100	0	54	74	0	0	25	0.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344