genome.fa.s10.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  30  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10440415--10440676	125	2.1	127	82	5	316	37	16	10	34	1.84
10440845--10441261	3	139.3	3	68	17	104	60	2	7	28	1.39
10440837--10440894	20	2.9	20	84	5	73	65	0	6	27	1.18
10440964--10441190	14	15.7	14	65	19	67	62	2	7	26	1.35
10441017--10441190	20	8.6	20	66	8	73	63	2	5	27	1.31
10441688--10441732	12	3.9	12	82	11	67	8	0	46	44	1.34
10441679--10441737	22	2.5	22	91	8	91	8	0	49	42	1.33
10442220--10442507	134	2.2	133	82	3	328	28	23	18	29	1.97
10442255--10442507	133	1.9	134	85	2	348	29	24	16	30	1.96
10442255--10442548	133	2.2	134	82	1	340	28	23	17	29	1.97
10442201--10442680	45	10.8	45	70	8	230	27	24	18	29	1.98
10442254--10442701	44	10.1	44	70	4	157	27	24	18	29	1.98
10442486--10442813	177	1.8	178	86	7	479	26	22	21	29	1.99
10442655--10443079	133	3.2	132	90	2	636	25	21	21	31	1.98
10442486--10442857	177	2.1	177	83	5	448	26	22	21	29	1.99
10442583--10443079	266	1.9	266	82	3	642	25	21	21	31	1.98
10442873--10443224	177	2.0	177	83	4	442	25	20	20	33	1.97
10443050--10443146	44	2.2	44	78	7	106	26	22	19	30	1.98
10442655--10443169	266	1.9	266	80	2	595	25	21	21	31	1.98
10444463--10444495	7	4.7	7	100	0	66	0	12	0	87	0.53
10444463--10444509	21	2.2	21	85	7	60	0	10	4	85	0.74
10449438--10449691	125	2.0	127	83	4	318	38	16	11	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10449865--10449902	20	1.9	20	89	10	60	63	2	7	26	1.35
10449973--10450190	3	72.7	3	66	20	73	61	2	9	27	1.38
10450085--10450190	23	4.6	22	74	8	70	64	0	6	28	1.25
10450716--10450749	10	3.2	10	84	15	50	8	0	50	41	1.34
10450704--10450749	22	2.1	22	95	0	83	10	0	45	43	1.39
10450703--10450747	12	3.9	12	85	11	67	11	0	42	46	1.39
10464234--10464272	20	2.1	19	90	9	62	56	5	5	33	1.43
10464704--10464770	3	22.3	3	78	6	73	59	1	7	31	1.34
10466159--10466490	87	3.8	87	91	2	468	24	21	23	30	1.99
10466189--10466660	44	10.9	43	72	11	286	24	21	21	31	1.98
10466159--10466664	174	2.9	174	84	4	555	24	21	22	31	1.98
10478884--10478922	20	2.1	19	90	9	62	56	5	5	33	1.43
10479354--10479419	3	22.3	3	81	9	82	62	1	4	31	1.25
10484868--10484892	11	2.3	11	100	0	50	40	8	16	36	1.77
10486000--10486135	53	2.6	51	82	12	159	35	13	24	26	1.93
10489109--10489172	31	2.1	31	88	2	94	59	14	4	21	1.53
10489960--10489984	13	1.9	13	100	0	50	56	28	0	16	1.41
10499865--10499898	11	2.8	12	86	13	52	35	0	0	64	0.94
10499898--10499957	26	2.3	25	82	5	66	36	0	1	61	1.06
10499880--10499956	18	4.3	18	75	8	68	36	0	1	62	1.04
10501548--10501616	27	2.7	26	82	8	72	56	4	0	39	1.19
10502595--10502659	28	2.5	26	82	12	71	40	0	1	58	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10502897--10502946	26	1.9	26	87	0	73	16	0	22	62	1.33
10507071--10507140	21	3.3	21	73	0	59	17	24	20	38	1.93
10533890--10533916	14	1.9	14	100	0	54	29	7	22	40	1.81
10535401--10535476	25	3.0	25	71	9	73	30	21	28	19	1.97
10537066--10537348	96	2.9	98	86	2	381	27	19	28	23	1.98
10537066--10537350	48	5.8	49	82	2	333	27	19	28	24	1.98
10539291--10539337	18	2.6	18	82	0	58	6	38	25	29	1.81
10539453--10539536	24	3.5	23	72	13	62	32	22	27	17	1.97
10543908--10543937	15	2.0	15	93	0	51	40	30	20	10	1.85
10549529--10549564	17	2.1	18	89	5	56	27	2	13	55	1.52
10575427--10575476	7	7.3	7	77	20	52	42	2	0	56	1.11
10575423--10575459	10	3.7	10	100	0	74	40	0	0	59	0.97
10575999--10576054	22	2.5	22	80	5	69	16	25	19	39	1.91
10578725--10578751	13	2.1	13	100	0	54	29	7	14	48	1.71
10582415--10582638	40	5.6	40	86	3	297	24	24	26	25	2.00
10582419--10582638	83	2.7	80	88	5	293	23	24	27	24	2.00
10584216--10584258	5	8.8	5	80	14	54	41	2	0	55	1.12
10584620--10584656	2	18.5	2	100	0	74	0	0	48	51	1.00
10585640--10585669	7	4.3	7	100	0	60	43	0	0	56	0.99
10586170--10586235	24	2.7	25	92	2	107	19	19	18	42	1.90
10586170--10586260	22	3.9	23	83	11	73	20	20	18	39	1.93
10590954--10591014	31	2.0	31	96	0	113	24	11	21	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10613155--10613189	17	2.1	17	100	0	70	22	17	11	48	1.79
10620504--10620561	20	3.1	20	78	19	79	50	0	13	36	1.42
10620522--10620554	16	2.1	16	100	0	66	54	0	6	39	1.25
10620400--10620648	138	1.8	137	92	0	426	51	4	13	30	1.61
10621441--10621588	43	3.4	43	72	10	115	26	18	25	29	1.98
10632459--10632491	17	1.9	17	100	0	66	24	0	15	60	1.35
10652815--10652945	67	2.0	67	95	0	235	32	22	14	30	1.94
10660335--10660390	28	2.0	28	96	0	103	32	8	10	48	1.69
10663974--10664039	33	2.0	33	84	0	87	39	18	21	21	1.93
10668534--10668563	12	2.5	12	94	0	51	53	0	3	43	1.17
10668698--10668743	18	2.5	19	82	10	60	60	0	0	39	0.97
10669658--10669690	16	2.1	16	88	5	50	39	3	15	42	1.62
10669875--10669944	28	2.5	28	93	2	124	12	4	32	50	1.60
10671670--10671749	24	3.3	23	67	23	58	35	16	1	47	1.55
10675221--10675254	14	2.3	15	90	5	52	50	0	0	50	1.00
10682665--10682719	24	2.3	24	96	0	101	38	18	23	20	1.93
10692887--10692924	20	1.9	20	88	0	58	60	5	0	34	1.19
10693901--10693927	13	2.1	13	100	0	54	59	0	0	40	0.98
10700185--10700449	103	2.6	104	91	0	415	29	30	20	19	1.97
10700777--10700841	30	2.2	29	81	8	76	30	27	6	35	1.81
10700784--10700841	30	1.9	30	85	0	80	31	24	6	37	1.82
10701825--10701865	21	2.0	21	90	0	64	19	29	21	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10707833--10707867	10	3.5	10	88	0	52	65	0	2	31	1.07
10707845--10707920	29	2.6	29	75	12	73	61	2	6	28	1.34
10711446--10711638	6	32.2	6	70	16	82	0	50	0	48	1.04
10711445--10711638	24	7.6	26	72	15	131	0	51	0	48	1.04
10711453--10711594	3	47.3	3	74	5	90	0	52	0	47	1.00
10711500--10711638	33	4.2	33	83	5	68	0	51	0	47	1.05
10711445--10711636	15	12.8	15	77	9	133	0	51	0	48	1.04
10714610--10714652	12	3.6	12	87	6	61	67	4	2	25	1.22
10714604--10714652	12	4.1	12	89	5	57	69	4	2	24	1.17
10714809--10714858	12	4.5	11	80	19	52	72	2	0	26	0.96
10719040--10719083	23	1.9	23	81	9	54	34	6	4	54	1.47
10719191--10719269	31	2.5	31	87	0	104	26	12	11	49	1.75
10721856--10722018	43	3.8	43	79	5	170	28	15	25	30	1.96
10732217--10732250	14	2.4	14	90	0	50	64	5	5	23	1.38
10740508--10740555	21	2.3	21	89	3	71	25	6	0	68	1.12
10740502--10740582	35	2.3	33	79	12	83	28	6	0	65	1.16
10740458--10740586	58	2.3	53	78	16	127	26	6	1	65	1.27
10740683--10740778	25	3.8	24	75	13	77	32	7	3	57	1.42
10741949--10741981	16	2.0	17	94	5	59	45	0	0	54	0.99
10742039--10742131	39	2.3	41	80	14	113	52	4	3	39	1.37
10743229--10743259	14	2.1	15	94	5	55	67	9	19	3	1.33
10743667--10743700	17	1.9	18	88	5	52	41	0	23	35	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10744413--10744471	26	2.3	25	79	2	64	50	1	20	27	1.57
10745241--10745274	15	2.2	16	89	5	52	23	0	26	50	1.50
10745253--10745348	50	1.9	48	82	14	115	17	0	20	61	1.35
10746148--10746189	22	2.0	22	90	4	68	73	0	0	26	0.83
10746150--10746194	23	2.0	23	86	8	65	73	4	0	22	1.01
10746763--10746821	9	6.0	10	76	11	52	66	1	32	0	1.02
10746759--10746824	11	6.3	11	76	15	52	65	1	33	0	1.02
10746759--10746824	13	5.0	13	82	12	73	65	1	33	0	1.02
10746994--10747101	33	3.4	32	70	24	95	37	0	10	52	1.35
10746992--10747110	60	2.0	60	90	3	186	34	0	11	53	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344