genome.fa.s10.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  107  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36062344--36062404	30	2.0	30	83	0	77	31	22	8	37	1.84
36066384--36066500	58	2.0	58	98	0	225	35	35	5	22	1.79
36079386--36080737	679	2.0	678	98	0	2605	38	11	29	20	1.87
36082904--36082962	28	2.1	28	100	0	118	35	15	10	38	1.81
36083129--36083238	39	2.9	38	89	5	168	27	30	20	21	1.98
36091970--36092105	49	2.7	51	85	2	195	29	26	19	24	1.99
36093705--36093936	46	4.9	49	75	12	218	26	19	31	22	1.98
36093708--36094023	138	2.3	133	80	10	334	26	19	30	24	1.98
36099302--36099387	43	2.0	43	95	4	156	34	20	13	30	1.92
36102199--36102381	79	2.3	81	83	7	223	24	22	27	25	2.00
36102200--36102383	40	4.6	39	82	9	203	24	22	27	25	2.00
36102252--36102406	79	2.0	79	83	7	199	25	21	27	25	1.99
36109946--36110122	40	4.4	40	80	7	191	25	22	27	25	2.00
36110028--36110137	40	2.8	40	84	4	116	25	21	28	24	1.99
36109999--36110163	79	2.1	79	79	6	174	26	20	26	26	1.99
36112662--36112867	47	4.4	47	94	0	340	29	31	7	32	1.85
36112662--36112867	94	2.2	94	96	0	376	29	31	7	32	1.85
36116082--36116151	21	3.3	20	72	7	68	45	17	21	15	1.85
36116064--36116215	42	3.6	42	83	3	189	43	16	23	16	1.87
36117636--36117664	14	2.0	15	93	6	51	20	13	24	41	1.89
36117665--36117703	18	2.2	17	86	13	53	23	2	0	74	0.94
36119550--36119590	21	2.0	20	85	4	55	51	0	19	29	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36123035--36123085	20	2.5	20	90	0	84	21	35	33	9	1.86
36126622--36126791	48	3.6	47	87	9	215	22	31	18	26	1.97
36126624--36126885	46	5.6	48	81	10	237	22	31	19	27	1.98
36131827--36131917	31	3.0	28	83	13	101	40	1	2	56	1.19
36133150--36133184	16	2.2	16	100	0	70	45	5	17	31	1.71
36138598--36138631	17	1.9	18	94	5	61	32	38	29	0	1.58
36140111--36140151	21	2.0	21	90	4	66	46	0	2	51	1.14
36142724--36142752	12	2.4	12	100	0	58	79	0	0	20	0.74
36143652--36143690	20	2.0	20	94	0	69	48	2	0	48	1.15
36154197--36154234	19	2.0	19	89	0	58	42	0	2	55	1.14
36156388--36156450	31	2.1	30	82	11	76	53	12	1	31	1.48
36160899--36160933	18	2.0	17	94	5	61	25	0	0	74	0.82
36164688--36164717	15	2.0	15	93	0	51	66	10	0	23	1.21
36164919--36164989	17	4.2	17	70	20	51	43	1	2	52	1.24
36165119--36165179	28	2.1	29	82	8	72	40	1	4	52	1.33
36165807--36165845	19	2.1	19	85	9	53	38	5	5	51	1.46
36167130--36167175	23	2.0	23	100	0	92	56	4	4	34	1.39
36167231--36167270	21	1.9	21	84	0	53	35	2	15	47	1.58
36168207--36168261	21	2.5	22	80	13	69	67	7	5	20	1.35
36168210--36168255	19	2.2	20	85	11	58	67	8	6	17	1.39
36168426--36168464	8	4.8	8	87	6	60	76	0	0	23	0.78
36168426--36168462	17	2.1	17	95	5	65	78	0	0	21	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36168426--36168472	17	2.8	17	81	15	62	74	0	0	25	0.82
36176925--36177102	40	4.5	40	90	3	254	25	27	22	24	2.00
36184954--36185171	40	5.5	40	92	2	325	25	27	22	24	2.00
36187899--36188291	131	3.0	130	83	3	466	38	13	15	33	1.86
36191142--36191327	42	4.4	43	82	10	188	25	24	20	29	1.99
36191142--36191338	85	2.3	84	79	14	208	26	23	20	29	1.99
36194070--36194551	48	10.0	48	92	0	784	35	6	26	31	1.82
36194692--36194794	37	2.8	37	93	0	170	22	19	33	25	1.97
36196781--36196893	27	4.3	24	76	20	95	38	10	25	25	1.88
36196781--36196893	51	2.1	54	84	7	144	38	10	25	25	1.88
36201400--36201694	47	6.2	47	86	3	394	30	8	31	29	1.87
36201400--36201694	96	3.1	96	90	0	450	30	8	31	29	1.87
36201544--36201619	22	3.3	22	66	16	64	27	10	31	30	1.90
36204031--36204073	21	2.0	21	100	0	86	27	4	23	44	1.73
36211015--36211173	43	3.7	44	76	10	159	25	16	27	31	1.96
36219906--36219932	13	2.1	13	100	0	54	14	33	37	14	1.88
36221051--36221089	14	2.8	14	100	0	78	10	15	5	69	1.34
36232240--36232445	40	5.2	40	94	0	351	28	27	22	22	1.99
36236766--36236813	25	1.9	25	86	0	69	33	25	16	25	1.96
36236850--36236931	20	4.2	20	90	3	139	36	10	19	32	1.87
36236985--36237082	47	2.1	47	94	5	171	30	20	20	28	1.98
36236984--36237103	24	5.0	24	88	10	174	30	20	21	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36237296--36237359	31	2.1	31	90	0	101	35	15	23	25	1.94
36239289--36239511	39	5.7	40	84	7	255	26	21	27	24	1.99
36239291--36239511	79	2.8	79	80	12	240	26	21	27	23	1.99
36239341--36239544	79	2.6	79	81	9	188	26	21	27	24	1.99
36246605--36246827	39	5.7	40	85	5	260	26	21	26	24	2.00
36246657--36246860	79	2.6	79	83	8	204	26	21	27	25	1.99
36249645--36249814	43	4.0	42	72	12	132	32	22	16	28	1.96
36250899--36250923	13	1.9	13	100	0	50	40	16	4	40	1.67
36257197--36257271	33	2.2	33	97	2	141	42	14	9	33	1.78
36259772--36259806	16	2.2	16	100	0	70	17	28	22	31	1.96
36262989--36263204	39	5.6	40	86	4	291	28	23	18	28	1.98
36262989--36263200	76	2.7	78	87	5	279	28	23	19	28	1.98
36267557--36267694	43	3.2	43	79	9	149	30	27	16	25	1.97
36270805--36270847	21	2.0	21	82	8	52	6	6	46	39	1.58
36270880--36270941	27	2.3	27	88	5	90	17	22	25	33	1.96
36272475--36272509	16	2.2	16	100	0	70	25	14	31	28	1.95
36278841--36278870	14	2.2	14	94	5	53	33	6	20	40	1.78
36288284--36288345	31	2.0	31	96	0	115	29	24	1	45	1.63
36292123--36292152	14	2.1	15	93	6	53	43	10	0	46	1.37
36302407--36302452	21	2.1	23	88	8	69	21	47	19	10	1.80
36303960--36304004	6	7.5	6	87	0	63	13	4	2	80	0.97
36303958--36304024	30	2.2	31	82	12	77	14	7	1	76	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36306916--36306948	13	2.6	13	90	4	50	30	3	12	54	1.52
36315795--36315977	79	2.3	81	84	7	232	25	27	22	24	2.00
36315774--36315977	40	5.1	40	82	8	238	25	27	22	24	2.00
36324692--36324782	5	17.6	5	86	10	98	18	2	0	79	0.84
36324688--36324770	6	15.0	6	85	7	90	18	2	0	79	0.84
36329352--36329380	14	2.0	15	93	6	51	51	20	0	27	1.47
36336175--36336253	6	12.8	6	84	10	106	49	15	17	17	1.80
36336691--36336766	27	2.9	26	84	11	102	22	25	19	32	1.97
36336704--36336753	24	2.0	24	92	3	82	20	26	22	32	1.98
36336660--36336773	28	4.3	26	76	11	106	23	22	20	33	1.97
36336756--36336857	28	3.8	27	75	11	93	26	8	23	41	1.83
36336787--36336914	26	4.9	26	74	10	82	32	7	21	39	1.82
36336875--36336987	27	4.2	27	82	2	138	41	4	20	33	1.72
36336875--36336987	53	2.1	54	83	1	138	41	4	20	33	1.72
36353235--36353261	12	2.2	12	100	0	54	44	0	7	48	1.31
36358507--36358592	6	16.8	5	83	13	81	18	2	0	79	0.85
36358507--36358591	25	3.3	25	77	20	95	18	2	0	78	0.85
36363153--36363181	14	2.0	15	93	6	51	51	20	0	27	1.47
36370000--36370077	6	12.8	6	86	8	113	50	15	16	17	1.79
36370479--36370592	27	4.3	27	83	4	133	23	21	20	34	1.97
36370548--36370701	54	2.9	53	83	3	157	27	10	21	40	1.85
36370546--36370702	27	5.8	27	78	5	138	26	11	21	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36370604--36370734	54	2.4	54	85	0	163	31	7	20	40	1.81
36370604--36370716	27	4.2	26	77	6	82	28	8	22	40	1.83
36370669--36370808	27	5.2	27	82	1	147	40	5	19	34	1.75
36370815--36370909	27	3.5	27	82	0	118	28	7	22	42	1.80
36386037--36386104	29	2.3	29	80	5	75	29	32	11	26	1.92
36386215--36386285	29	2.4	30	79	13	85	30	26	15	26	1.96
36394070--36394137	29	2.3	29	80	5	75	29	32	11	26	1.92
36394240--36394318	29	2.7	30	80	13	101	29	30	16	24	1.96
36397220--36397482	45	5.8	45	86	3	332	23	20	18	38	1.94
36399252--36399300	24	2.0	24	100	0	98	44	4	8	42	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344