Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  337  of  344  ( 41197 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109381774--109381832
20
3.0
20
69
14
52
44
10
0
45
1.37
109389113--109389155
15
2.8
17
86
13
58
41
0
0
58
0.98
109390262--109390363
50
2.0
50
100
0
204
37
15
6
40
1.74
109400903--109400935
11
2.9
12
86
13
52
33
0
0
66
0.92
109401114--109401170
22
2.5
22
80
5
60
57
7
15
19
1.60
109401114--109401161
22
2.1
23
84
3
62
54
8
14
22
1.67
109407833--109407872
18
2.2
18
86
0
53
27
2
0
70
1.01
109408978--109409016
6
6.5
6
93
0
69
35
46
17
0
1.49
109414010--109414037
14
2.0
14
100
0
56
50
0
0
50
1.00
109418266--109418317
23
2.3
23
100
0
104
57
34
3
3
1.35
109418388--109418448
16
3.9
16
82
6
63
50
21
1
26
1.58
109419755--109419832
30
2.5
31
81
6
88
32
7
11
48
1.68
109420052--109420104
22
2.3
23
93
6
90
33
5
7
52
1.53
109422818--109422867
24
2.1
24
96
3
93
14
4
12
70
1.31
109422896--109422952
28
2.2
25
84
9
69
42
0
3
54
1.17
109422951--109422997
21
2.2
21
85
7
60
36
2
2
59
1.21
109422935--109423019
34
2.7
30
84
12
107
38
2
1
57
1.19
109422973--109423029
14
3.9
14
78
13
69
36
1
0
61
1.07
109422935--109423025
31
2.8
32
87
9
123
39
2
1
57
1.18
109422993--109423057
22
3.0
21
84
11
78
43
1
0
55
1.09
109422993--109423043
21
2.5
20
90
6
75
39
1
0
58
1.09
109423077--109423126
22
2.3
22
89
0
82
34
0
6
60
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109423114--109423177
31
2.1
30
80
11
69
39
0
1
59
1.07
109423311--109423335
13
1.9
13
100
0
50
56
0
0
44
0.99
109423422--109423470
20
2.3
20
89
6
71
59
0
0
40
0.98
109423408--109423475
22
3.1
22
83
10
86
54
0
1
44
1.09
109423422--109423483
21
3.0
21
84
11
74
56
1
1
40
1.19
109423463--109423538
23
3.1
24
75
17
77
52
3
1
42
1.28
109423474--109423543
23
3.0
23
76
17
81
52
5
0
41
1.25
109423596--109423639
9
4.8
9
88
2
52
70
4
11
13
1.31
109429103--109429241
42
3.3
42
84
5
174
37
23
12
26
1.91
109430203--109430271
5
13.8
5
100
0
138
59
0
0
40
0.97
109437608--109437637
14
2.1
14
93
0
51
50
13
10
26
1.73
109441324--109441394
30
2.3
29
77
13
72
42
1
5
50
1.34
109446802--109446893
45
2.0
46
97
2
177
38
6
13
42
1.70
109448267--109448297
16
1.9
16
93
0
53
58
19
9
12
1.62
109450522--109450572
3
17.3
3
75
4
50
33
1
3
60
1.26
109454222--109454262
20
2.0
20
100
0
82
24
24
12
39
1.89
109457812--109457846
16
2.2
16
100
0
70
40
17
14
28
1.88
109460103--109460201
3
33.0
3
100
0
198
66
0
33
0
0.92
109464981--109465022
21
1.9
23
85
9
61
45
2
2
50
1.27
109495365--109495402
15
2.4
17
86
8
53
28
0
2
68
1.03
109496088--109496144
27
2.2
26
81
9
62
28
7
0
64
1.19
109496256--109496300
22
2.0
22
86
8
63
60
2
0
37
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109496266--109496310
20
2.3
19
84
7
54
60
0
0
40
0.97
109496391--109496534
43
3.4
43
87
3
202
28
18
31
22
1.97
109496606--109496649
22
2.0
22
95
0
79
43
27
20
9
1.82
109496762--109496798
19
1.9
19
88
0
56
56
2
8
32
1.43
109496770--109496813
20
2.2
19
84
8
52
52
2
9
36
1.46
109497009--109497050
21
2.1
21
86
8
61
54
9
0
35
1.33
109497454--109497487
14
2.2
16
90
10
54
61
5
2
29
1.34
109497497--109497538
13
2.9
16
73
26
56
54
4
4
35
1.42
109497684--109497758
11
6.7
12
75
14
63
62
0
2
34
1.09
109497663--109497758
6
16.5
6
69
18
51
59
3
3
34
1.29
109501034--109501117
26
3.2
26
91
0
132
34
5
23
35
1.80
109502604--109502656
26
2.0
25
82
13
63
39
22
11
26
1.88
109503982--109504014
14
2.4
14
94
0
57
57
0
3
39
1.14
109504586--109504619
18
1.9
17
88
5
50
47
0
20
32
1.51
109509383--109509490
26
4.2
26
93
0
189
36
24
7
32
1.83
109514573--109514637
34
2.0
34
84
6
89
30
26
16
26
1.97
109515642--109515702
28
2.2
28
100
0
122
42
19
3
34
1.68
109516512--109516567
26
2.2
26
96
0
103
37
25
7
30
1.82
109519679--109519926
131
1.9
130
83
2
318
30
18
17
33
1.94
109519679--109519959
131
2.1
131
80
2
314
31
18
16
33
1.93
109520095--109520335
130
1.9
130
84
1
331
23
18
19
39
1.92
109523366--109523407
18
2.3
18
100
0
84
21
38
21
19
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109527875--109527909
17
2.1
17
100
0
70
48
5
5
40
1.51
109529258--109529296
21
2.0
21
85
10
55
35
20
2
41
1.66
109529767--109529807
21
2.0
21
90
9
66
24
12
7
56
1.61
109530117--109530149
17
2.0
16
94
5
57
54
0
0
45
0.99
109532034--109532091
16
3.5
15
79
13
53
12
5
3
79
1.02
109532103--109532149
21
2.2
22
88
11
71
42
0
4
53
1.20
109532180--109532255
36
2.1
36
85
4
100
44
1
1
52
1.17
109532210--109532254
23
2.0
22
91
4
72
46
2
0
51
1.13
109532219--109532260
23
1.9
22
85
9
59
47
0
0
52
1.00
109532318--109532357
19
2.2
18
86
13
55
20
7
0
72
1.08
109532460--109532512
18
2.9
18
80
8
54
16
9
1
71
1.21
109532509--109532556
18
2.7
18
76
0
51
22
4
2
70
1.15
109532598--109532706
37
3.2
34
78
8
114
33
1
3
60
1.25
109532770--109532802
13
2.5
14
90
9
52
27
3
0
69
1.03
109533038--109533100
28
2.3
27
89
8
99
74
0
14
11
1.07
109546333--109546401
27
2.7
25
82
6
75
57
4
7
30
1.45
109546333--109546401
25
2.8
25
80
10
79
57
4
7
30
1.45
109546478--109546555
25
2.9
27
74
16
81
58
5
5
30
1.41
109555049--109555082
18
1.9
17
88
5
50
47
0
20
32
1.51
109559839--109559883
22
2.1
22
83
4
56
17
8
15
57
1.63
109560202--109560269
34
2.0
34
91
0
109
26
22
4
47
1.70
109575318--109575374
30
1.9
30
92
0
96
22
38
28
10
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109576654--109576712
19
3.2
18
78
7
57
67
1
3
27
1.16
109577575--109577711
70
2.0
70
100
0
274
40
18
7
33
1.78
109578636--109578721
26
3.4
25
80
7
93
16
13
36
33
1.88
109581203--109581227
13
1.9
13
100
0
50
60
0
0
40
0.97
109582794--109582831
17
2.2
18
85
4
51
55
2
0
42
1.14
109586643--109586892
131
1.9
131
90
0
401
32
18
18
30
1.95
109591741--109591980
46
5.3
46
85
11
225
36
14
21
27
1.93
109591741--109591943
46
4.3
48
88
7
265
35
14
21
28
1.92
109591675--109591943
98
2.7
98
93
0
457
34
14
22
28
1.93
109591907--109592052
37
4.0
37
93
1
251
36
16
22
24
1.94
109594303--109594361
18
3.6
18
68
25
58
47
28
20
3
1.66
109594302--109594360
30
2.0
30
96
0
109
47
27
22
3
1.67
109600901--109600941
18
2.5
17
77
14
50
36
0
4
58
1.20
109601664--109601703
12
3.3
12
86
10
55
20
2
0
77
0.88
109605203--109605229
13
2.1
13
100
0
54
29
14
0
55
1.40
109609663--109609832
86
2.0
88
82
6
213
43
14
10
31
1.79
109613197--109613242
22
2.1
22
95
0
83
13
41
13
32
1.82
109618381--109618416
17
2.1
18
89
5
56
58
0
0
41
0.98
109625752--109625799
17
2.7
18
80
6
53
64
4
0
31
1.12
109625775--109625834
21
2.8
21
79
16
61
61
6
1
30
1.31
109625793--109625834
22
1.9
23
85
9
61
59
7
2
30
1.37
109627463--109627524
31
2.0
31
87
6
90
32
9
9
48
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109632799--109632844
18
2.5
18
82
3
56
65
2
2
30
1.16
109637337--109637375
13
3.0
13
92
0
69
7
35
15
41
1.76
109645224--109645259
19
1.9
19
88
5
56
44
5
0
50
1.25
109645415--109645454
21
1.9
21
84
0
53
20
2
15
62
1.43
109645709--109645756
20
2.3
21
79
13
55
52
2
0
45
1.12
109645713--109645764
26
2.0
26
81
7
61
55
3
0
40
1.18
109647416--109647885
203
2.3
207
85
4
607
22
14
25
38
1.91
109649719--109649744
12
2.2
12
100
0
52
46
7
15
30
1.74
109653885--109654007
47
2.6
47
88
1
165
31
30
11
26
1.91
109654048--109654112
31
2.1
31
82
5
78
30
21
18
29
1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344