genome.fa.s10.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  160  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53450709--53451213	47	10.6	47	92	2	794	32	8	29	29	1.87
53450709--53451213	96	5.3	94	93	1	794	32	8	29	29	1.87
53454931--53455088	85	1.8	86	87	4	239	27	18	24	29	1.98
53456364--53456519	45	3.4	45	83	3	179	32	27	15	24	1.95
53456394--53456523	46	2.9	45	87	2	188	33	27	15	23	1.95
53457058--53457088	15	2.1	15	93	0	53	54	25	0	19	1.44
53457382--53457460	23	3.6	23	71	10	83	48	12	3	35	1.59
53460123--53460165	15	2.9	15	90	10	63	6	20	0	72	1.08
53463425--53463579	43	3.6	41	77	6	130	29	14	24	31	1.95
53464459--53464585	45	2.9	45	85	8	156	23	29	23	23	1.99
53464915--53465112	43	4.6	43	87	0	279	31	33	22	12	1.92
53480174--53480227	21	2.7	19	83	8	63	37	12	20	29	1.90
53480432--53480459	1	28.0	1	100	0	56	0	0	0	100	0.00
53487084--53487131	25	1.9	25	86	0	69	33	25	16	25	1.96
53487177--53487214	20	1.9	20	100	0	76	34	13	21	31	1.91
53487263--53487408	25	6.0	24	88	5	188	28	18	22	30	1.97
53487264--53487408	49	3.0	47	84	10	177	28	18	22	29	1.98
53487828--53487931	24	4.3	24	95	2	183	29	20	21	28	1.98
53487828--53487945	48	2.5	48	90	5	168	28	20	21	29	1.98
53488138--53488201	31	2.1	31	90	0	101	35	17	23	23	1.95
53489808--53489880	22	3.3	22	92	0	119	30	24	15	30	1.95
53495010--53495074	33	2.0	33	96	0	121	33	26	15	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53500574--53500929	47	7.6	47	88	1	491	32	10	31	25	1.89
53501048--53501127	37	2.2	37	86	4	108	23	17	31	27	1.97
53504226--53504324	39	2.5	39	80	4	110	26	20	27	26	1.99
53504542--53504709	47	3.6	47	91	0	264	32	8	30	27	1.86
53507419--53507876	110	4.2	110	86	2	616	30	12	23	33	1.92
53513454--53513615	42	3.8	42	83	3	191	30	17	24	27	1.97
53513454--53513615	85	1.9	84	85	6	220	30	17	24	27	1.97
53520346--53520512	46	3.6	47	79	12	168	28	19	29	22	1.98
53520346--53520553	46	4.5	45	76	15	160	27	19	28	23	1.98
53534570--53534647	36	2.1	36	83	6	95	28	32	17	21	1.96
53534767--53535092	89	3.6	92	86	8	438	26	30	10	31	1.90
53534782--53535106	47	7.2	47	85	7	433	26	31	10	32	1.90
53540584--53540648	33	2.0	33	96	0	121	24	15	26	33	1.95
53545777--53545849	22	3.3	22	92	0	119	30	15	24	30	1.95
53547453--53547516	31	2.1	31	90	0	101	23	23	17	35	1.95
53547724--53547825	23	4.3	23	91	6	161	29	21	18	30	1.97
53547724--53547825	47	2.2	46	94	3	177	29	21	18	30	1.97
53548228--53548379	25	6.2	25	83	11	172	29	23	17	29	1.97
53548228--53548379	47	3.1	48	83	12	177	29	23	17	29	1.97
53548430--53548467	20	1.9	20	100	0	76	31	21	13	34	1.91
53548432--53548476	20	2.2	20	92	0	72	31	22	13	33	1.92
53548512--53548559	25	1.9	25	86	0	69	25	16	25	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53555658--53555789	25	5.4	24	90	5	169	30	22	18	28	1.97
53555635--53555787	48	3.1	47	82	10	166	29	22	18	29	1.97
53555834--53555900	20	3.3	20	89	0	107	31	20	13	34	1.92
53562064--53562219	68	2.2	68	79	11	165	19	27	17	35	1.94
53570610--53570647	14	2.5	15	87	8	51	55	0	0	44	0.99
53573642--53573698	29	2.0	29	96	0	105	59	17	8	14	1.59
53574723--53574756	17	2.0	17	88	11	52	41	11	8	38	1.73
53576739--53576799	30	2.0	30	83	0	77	31	22	8	37	1.84
53581144--53581204	30	2.0	30	83	0	77	31	22	8	37	1.84
53586869--53586893	12	2.1	12	100	0	50	84	8	0	8	0.79
53587210--53587239	11	2.6	11	94	5	51	10	6	3	80	1.01
53591046--53591084	19	2.0	21	90	10	64	30	0	0	69	0.89
53594515--53594582	21	3.2	21	76	15	61	17	0	35	47	1.48
53594524--53594582	7	8.6	7	76	14	52	18	0	35	45	1.50
53594525--53594595	34	2.1	34	82	10	83	21	0	36	42	1.53
53598817--53599087	93	2.9	93	79	11	261	23	29	19	27	1.98
53598770--53599083	49	6.6	47	73	13	218	23	28	19	28	1.98
53601447--53601544	24	4.0	24	89	1	142	36	6	35	21	1.78
53602931--53603008	27	2.9	27	80	14	90	17	25	23	33	1.96
53605780--53606188	47	8.6	47	91	3	640	29	29	8	33	1.86
53605780--53606188	96	4.3	96	93	3	693	29	29	8	33	1.86
53605780--53606188	143	2.9	141	90	4	658	29	29	8	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53609736--53609764	6	4.8	6	100	0	58	34	0	0	65	0.93
53609736--53609770	18	1.9	18	88	0	52	40	0	0	60	0.97
53610318--53610486	9	18.1	9	81	9	196	42	19	2	34	1.66
53612694--53612756	32	2.0	32	100	0	126	30	12	15	41	1.85
53622954--53623058	38	2.7	40	80	16	114	45	0	0	52	1.13
53624743--53624783	13	3.2	12	86	13	55	70	4	0	24	1.06
53629724--53629751	6	4.7	6	100	0	56	32	0	0	67	0.91
53629703--53629764	18	3.5	17	73	20	56	29	0	0	70	0.87
53637191--53637277	25	3.5	25	82	0	111	16	12	27	43	1.84
53637261--53637391	20	6.6	20	80	0	145	14	19	26	38	1.91
53637401--53637483	26	3.2	26	77	5	96	21	21	21	34	1.96
53642251--53642473	39	5.7	40	82	8	230	26	21	26	24	2.00
53642324--53642506	79	2.3	79	80	8	187	27	21	25	24	1.99
53649247--53649369	39	3.2	39	89	0	174	29	2	19	48	1.61
53652355--53652532	27	6.6	27	83	3	205	26	15	28	29	1.96
53652356--53652511	82	1.9	81	88	3	233	26	15	28	29	1.96
53652352--53652532	82	2.2	81	83	2	229	27	15	27	29	1.96
53660239--53660412	27	6.4	27	83	4	188	27	14	27	30	1.95
53660239--53660412	82	2.1	81	82	3	206	27	14	27	30	1.95
53662594--53662628	15	2.3	15	85	0	52	28	37	22	11	1.89
53672082--53672109	5	5.6	5	100	0	56	78	0	0	21	0.75
53674597--53674660	31	2.1	31	90	0	101	25	23	15	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53674874--53675039	23	7.1	23	95	2	287	28	21	22	27	1.99
53674874--53675040	47	3.6	47	94	1	300	28	20	22	28	1.99
53675098--53675154	9	5.9	9	73	15	51	35	21	8	35	1.84
53675086--53675156	20	3.5	20	94	0	124	32	19	11	36	1.87
53675091--53675145	11	5.4	11	70	16	55	30	20	12	36	1.90
53675193--53675240	25	2.0	24	87	4	69	25	16	25	33	1.96
53676401--53676473	27	2.7	27	77	12	78	26	21	19	32	1.97
53676491--53676716	27	8.3	27	72	7	118	31	9	19	38	1.85
53676576--53676716	54	2.6	53	76	6	142	29	7	21	40	1.82
53676695--53676826	27	4.9	27	85	3	176	40	9	21	28	1.83
53676695--53676851	54	2.9	54	84	1	190	39	8	22	28	1.84
53676695--53676851	27	5.8	27	82	5	158	39	8	22	28	1.84
53676708--53676878	54	3.2	54	82	1	173	37	9	23	28	1.87
53676683--53676878	81	2.4	79	76	6	196	36	8	24	30	1.86
53678388--53678426	20	2.0	20	100	0	78	53	5	5	35	1.45
53685542--53685804	40	6.6	40	87	3	307	26	28	20	24	1.99
53685736--53685813	40	1.9	41	82	10	97	26	28	21	23	1.99
53701370--53701592	40	5.6	40	83	3	200	27	28	19	24	1.99
53701524--53701601	40	1.9	41	82	10	97	26	28	21	23	1.99
53709862--53709944	42	2.0	42	82	0	103	18	32	22	26	1.97
53712404--53712440	14	2.5	15	91	8	67	21	32	32	13	1.92
53712426--53712557	63	2.1	63	87	1	185	19	21	27	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53718778--53719044	142	1.9	142	84	3	358	28	19	26	24	1.99
53726498--53726767	49	5.6	48	73	14	193	26	19	29	24	1.99
53728855--53729027	27	6.4	27	86	0	238	35	19	20	24	1.96
53731971--53732050	23	3.5	23	78	10	67	41	20	16	22	1.90
53734430--53734527	9	12.3	9	68	27	62	50	0	1	48	1.07
53734428--53734488	30	2.0	31	87	9	90	49	0	0	50	1.00
53734431--53734527	39	2.5	39	86	8	153	50	0	1	48	1.07
53734431--53734532	38	2.7	38	87	6	152	50	0	0	49	1.07
53734449--53734517	18	3.5	19	74	18	70	47	0	1	50	1.09
53734481--53734538	30	2.0	29	86	3	80	50	0	1	48	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344