genome.fa.s10.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  139  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46655789--46655947	42	3.8	41	78	12	126	34	25	16	23	1.95
46655789--46655945	85	1.8	85	81	8	194	33	25	16	24	1.96
46658964--46659067	27	3.8	27	83	9	131	33	21	25	20	1.97
46658956--46659070	55	2.1	55	85	6	155	34	20	25	19	1.96
46664688--46664790	25	4.1	25	79	9	102	32	23	18	26	1.97
46675145--46675203	27	2.3	25	82	5	64	33	20	23	22	1.97
46675166--46675225	32	1.9	31	82	3	75	33	21	23	21	1.97
46686543--46686902	181	2.0	181	96	2	661	24	13	22	39	1.91
46690935--46690962	2	14.0	2	100	0	56	50	50	0	0	1.00
46691189--46691317	39	3.3	39	91	0	195	24	26	18	30	1.98
46694713--46694767	23	2.5	22	82	14	60	74	1	18	5	1.10
46694722--46694767	25	1.9	23	86	8	65	76	2	17	4	1.06
46695360--46695447	37	2.4	37	100	0	176	29	14	22	32	1.94
46696046--46696228	79	2.3	81	83	7	223	24	21	27	25	1.99
46696046--46696230	40	4.7	40	82	6	207	24	21	28	25	1.99
46696100--46696253	79	1.9	79	83	7	197	25	19	27	27	1.99
46702740--46702786	23	2.0	24	87	4	69	72	2	17	8	1.19
46703377--46703464	37	2.4	37	100	0	176	29	14	22	32	1.94
46704064--46704248	40	4.7	40	82	7	209	23	22	28	25	1.99
46704119--46704271	79	1.9	79	84	7	204	25	20	28	26	1.99
46706570--46706669	44	2.2	45	82	5	114	29	23	21	27	1.99
46706674--46707197	176	3.0	176	82	2	629	27	26	17	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46708401--46708443	16	2.7	16	75	13	52	16	4	0	79	0.90
46720467--46720502	15	2.3	16	90	4	56	55	0	11	33	1.35
46722676--46722796	25	4.9	24	73	8	100	28	23	19	28	1.98
46724230--46724260	16	1.9	16	100	0	62	29	6	12	51	1.65
46727641--46727813	46	3.7	46	79	10	217	23	21	26	28	1.99
46727638--46727808	93	1.8	93	94	0	306	22	21	27	28	1.99
46729883--46730005	28	4.4	28	92	2	185	26	12	27	33	1.92
46731122--46731231	54	2.0	54	100	0	220	42	12	13	30	1.82
46743577--46743638	30	2.1	30	100	0	124	25	16	22	35	1.94
46745772--46745921	55	2.8	54	80	4	149	26	15	29	28	1.96
46745744--46745921	27	6.6	27	77	6	146	25	15	28	30	1.96
46745745--46745900	82	1.9	81	81	6	190	25	16	28	30	1.96
46753777--46753926	55	2.8	54	80	4	149	26	15	29	28	1.96
46753749--46753926	27	6.6	27	77	6	146	25	15	28	30	1.96
46753750--46753905	82	1.9	81	81	6	190	25	16	28	30	1.96
46778077--46778141	34	1.9	34	81	6	78	29	23	23	24	1.99
46796555--46796732	27	6.6	27	83	5	180	29	28	15	27	1.96
46796576--46796731	82	1.9	81	86	3	224	28	28	15	27	1.96
46797281--46797305	13	1.9	13	100	0	50	32	16	20	32	1.94
46804450--46804627	27	6.6	27	83	5	180	29	28	15	27	1.96
46804471--46804626	82	1.9	81	86	3	224	28	28	15	27	1.96
46805174--46805198	13	1.9	13	100	0	50	32	16	20	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46808519--46808689	39	4.3	40	87	3	204	25	28	21	24	1.99
46808519--46808689	79	2.2	79	81	4	202	25	28	21	24	1.99
46808674--46808751	40	1.9	41	82	10	97	26	28	20	24	1.99
46815476--46815514	20	2.0	20	100	0	78	38	15	30	15	1.88
46815539--46815710	40	4.3	40	86	2	204	25	28	21	25	1.99
46815695--46815772	40	1.9	41	82	10	97	26	28	20	24	1.99
46840270--46840360	26	3.5	26	76	11	87	18	19	24	37	1.94
46841793--46841926	40	3.3	40	87	0	178	33	24	17	24	1.96
46847212--46847241	9	3.2	9	95	4	51	53	23	3	20	1.60
46866714--46866834	56	2.2	56	98	0	233	22	23	9	44	1.82
46871205--46871429	49	4.5	49	78	5	236	25	17	26	30	1.97
46871204--46871387	100	1.8	100	84	1	251	25	19	26	29	1.98
46877183--46877411	40	5.8	40	90	5	315	23	20	28	26	1.99
46877183--46877437	80	3.2	80	87	6	326	24	21	28	26	1.99
46885252--46885481	40	5.8	40	92	2	340	23	22	28	25	1.99
46885252--46885507	40	6.4	39	91	4	331	24	22	27	25	2.00
46889927--46890329	48	8.5	48	74	10	262	27	18	29	24	1.98
46889927--46890141	46	4.6	45	77	12	179	27	20	28	24	1.99
46891439--46891477	21	1.9	21	94	5	71	10	35	30	23	1.88
46896979--46897003	13	1.9	13	100	0	50	36	16	16	32	1.90
46897819--46898036	46	4.7	49	81	12	205	25	18	30	25	1.98
46897856--46898036	95	1.9	96	87	8	271	25	17	30	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46901007--46901035	12	2.3	13	94	5	51	0	10	0	89	0.48
46901889--46901921	17	1.9	17	100	0	66	54	12	9	24	1.66
46904647--46904774	28	4.5	28	88	2	175	32	26	12	28	1.93
46904647--46904774	29	4.5	28	86	4	159	32	26	12	28	1.93
46904646--46904774	57	2.3	57	86	5	181	32	27	12	27	1.93
46909428--46909484	18	2.9	21	72	20	59	21	19	29	29	1.97
46909440--46909474	18	1.9	18	100	0	70	17	17	34	31	1.93
46910838--46910926	16	5.5	16	66	17	58	41	8	19	30	1.82
46910868--46910969	35	3.1	35	69	13	115	39	10	16	33	1.84
46910838--46910969	65	2.0	65	100	0	264	39	9	18	31	1.84
46910833--46910946	30	3.6	30	75	11	129	39	7	22	29	1.83
46913126--46913163	16	2.4	16	100	0	76	65	10	0	23	1.23
46917632--46917894	40	6.6	40	88	3	325	26	27	20	25	1.99
46932131--46932167	16	2.3	16	100	0	74	16	10	43	29	1.82
46935886--46936028	40	3.5	40	83	4	171	26	23	25	23	2.00
46943571--46943714	40	3.6	40	85	5	193	25	25	26	22	2.00
46947366--46947401	17	2.1	17	94	0	63	27	5	30	36	1.80
46951580--46951724	40	3.6	40	85	4	193	25	24	26	23	2.00
46954224--46954379	51	3.1	51	97	0	285	27	3	15	53	1.59
46976567--46976633	33	2.0	34	82	8	84	29	22	22	25	1.99
46976897--46976957	26	2.3	26	82	0	77	34	19	18	27	1.95
46978240--46978274	14	2.4	15	85	4	54	71	20	8	0	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46985184--46985242	13	4.5	13	70	16	50	28	8	25	37	1.85
46985184--46985247	26	2.5	26	76	0	74	31	7	25	35	1.84
46985420--46985478	30	2.0	29	83	12	75	50	0	1	47	1.11
46988585--46988613	12	2.4	12	100	0	58	0	10	37	51	1.36
46992603--46992702	34	2.9	34	86	0	137	26	20	24	30	1.98
47004653--47004825	46	3.7	46	76	13	183	31	27	18	22	1.97
47004659--47004828	93	1.8	93	90	0	277	31	28	18	22	1.97
47008065--47008240	54	3.3	53	80	5	194	38	21	9	31	1.85
47008072--47008238	27	6.2	27	77	7	117	39	19	9	31	1.84
47008218--47008390	27	6.4	27	89	0	256	30	23	6	39	1.81
47008191--47008374	81	2.3	81	83	1	199	33	22	7	37	1.81
47008395--47008803	27	15.2	27	83	4	479	35	19	19	25	1.95
47008395--47008803	81	5.1	81	87	2	529	35	19	19	25	1.95
47009045--47009096	27	2.0	26	88	3	77	17	25	21	36	1.94
47009026--47009179	67	2.3	67	98	0	299	17	28	22	31	1.97
47009282--47009434	6	24.8	6	76	15	143	16	18	16	47	1.83
47009282--47009398	31	3.6	31	81	13	153	17	18	17	47	1.84
47009282--47009434	37	4.3	35	82	9	154	16	18	16	47	1.83
47009310--47009443	43	3.1	42	88	4	153	17	17	17	47	1.83
47015098--47015268	93	1.8	93	92	0	288	29	27	20	22	1.99
47015093--47015265	46	3.7	46	77	10	199	30	26	20	23	1.98
47015688--47015747	30	2.0	30	83	0	75	33	23	6	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47018740--47018803	31	2.1	30	88	2	92	25	21	14	39	1.91
47018995--47019165	25	7.0	24	85	6	195	28	22	19	29	1.98
47019223--47019279	9	5.9	9	73	15	51	35	21	8	35	1.84
47019211--47019281	20	3.5	20	94	0	124	32	21	11	35	1.89
47019216--47019270	11	5.4	11	70	16	55	30	20	12	36	1.90
47020523--47020606	27	3.1	27	89	3	125	21	26	21	30	1.98
47020668--47020719	27	1.9	27	84	7	70	36	11	11	40	1.78
47020751--47020913	27	6.0	27	77	11	154	31	9	19	38	1.85
47020756--47020950	81	2.4	81	87	2	259	30	9	21	38	1.85
47020758--47020936	54	3.3	52	80	9	155	30	9	20	40	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344