genome.fa.s10.2.7.7.80.10.50.1000.174.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  174  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58118443--58118594	27	5.6	27	93	3	241	26	13	28	30	1.94
58118443--58118594	55	2.8	55	94	0	259	26	13	28	30	1.94
58121261--58121313	24	2.3	23	87	12	74	49	1	3	45	1.31
58121431--58121479	24	2.0	25	84	11	66	30	2	6	61	1.32
58123972--58124000	14	2.1	14	93	6	51	55	3	0	41	1.17
58128683--58128718	18	2.0	18	94	0	63	47	16	5	30	1.70
58128843--58129010	39	4.3	39	91	3	275	31	26	23	19	1.98
58132661--58132697	17	2.2	17	100	0	74	40	18	5	35	1.74
58140911--58140966	20	2.7	21	86	5	78	12	33	28	25	1.92
58144571--58144601	8	4.0	8	91	8	55	74	0	0	25	0.82
58144571--58144601	15	2.0	16	93	6	55	74	0	0	25	0.82
58147045--58147105	22	2.8	22	82	0	77	39	22	19	18	1.92
58147521--58147582	27	2.3	27	88	0	88	32	17	14	35	1.90
58147562--58147620	27	2.2	27	84	0	73	27	11	27	33	1.92
58147572--58147807	54	4.4	54	80	5	255	32	8	19	38	1.83
58147573--58147807	27	8.7	27	78	7	219	32	8	19	38	1.83
58147572--58147793	81	2.8	80	82	6	277	33	8	18	39	1.82
58157340--58157604	137	1.9	137	81	3	318	19	20	27	32	1.97
58174324--58174546	39	5.7	40	85	8	266	25	22	27	24	2.00
58174324--58174546	79	2.8	81	84	9	282	25	22	27	24	2.00
58174324--58174579	79	3.3	79	81	10	217	26	21	27	24	1.99
58182304--58182526	39	5.7	40	85	8	266	25	22	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58182304--58182526	79	2.8	81	84	9	282	25	22	27	24	2.00
58182304--58182559	79	3.3	79	81	10	217	26	21	27	24	1.99
58186805--58186864	27	2.2	28	85	5	79	36	20	26	16	1.93
58213244--58213303	27	2.3	26	85	2	75	35	16	23	25	1.95
58220305--58220364	27	2.3	26	85	2	75	35	20	23	21	1.96
58237211--58237245	6	5.5	6	87	12	52	80	2	0	17	0.84
58237214--58237240	14	1.9	14	100	0	54	74	3	0	22	0.98
58237188--58237245	20	2.6	22	81	15	66	72	3	0	24	1.00
58237264--58237358	9	10.6	9	84	6	113	26	9	18	45	1.80
58252308--58252339	14	2.3	14	94	0	55	53	28	0	18	1.45
58255388--58255489	28	3.7	28	80	1	107	42	21	14	21	1.89
58255453--58255572	28	4.3	27	77	12	100	25	20	25	29	1.99
58258229--58258347	24	5.0	24	91	4	179	29	21	21	28	1.98
58258399--58258437	20	2.0	20	100	0	78	30	20	12	35	1.90
58258400--58258444	20	2.2	20	92	0	72	31	22	13	33	1.92
58266110--58266185	24	3.2	24	98	0	143	27	18	19	34	1.95
58266234--58266300	20	3.3	20	93	0	116	32	20	11	34	1.90
58266234--58266289	11	5.5	11	71	16	57	32	19	12	35	1.89
58274746--58274908	42	3.9	42	76	5	132	30	21	15	32	1.94
58281646--58281945	56	5.4	56	91	1	476	34	24	15	26	1.94
58283314--58283349	10	3.6	10	85	14	56	16	22	44	16	1.86
58283314--58283358	20	2.3	20	92	3	74	17	24	42	15	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58283428--58283508	27	3.0	27	87	0	108	30	22	22	24	1.99
58283548--58283782	27	8.7	27	80	4	240	37	18	11	31	1.87
58283832--58283923	27	3.4	27	80	3	87	34	20	22	21	1.96
58284090--58284159	27	2.6	27	81	0	86	14	21	22	41	1.89
58287260--58287411	27	5.6	27	90	2	223	26	14	28	30	1.95
58287260--58287411	55	2.8	55	89	2	234	26	14	28	30	1.95
58287260--58287411	82	1.9	82	91	0	250	26	14	28	30	1.95
58292494--58293038	40	13.6	40	94	0	930	24	27	20	27	1.99
58300601--58300646	20	2.3	21	82	14	62	26	17	28	28	1.98
58305065--58305316	55	4.7	54	78	10	252	34	16	25	23	1.95
58305073--58305273	108	1.8	110	88	4	309	33	16	25	23	1.96
58305389--58305439	23	2.2	24	89	3	77	49	9	21	19	1.77
58308949--58309189	47	5.1	47	92	0	374	33	11	28	26	1.91
58308978--58309096	22	5.1	22	63	25	66	32	13	29	24	1.93
58309397--58309540	37	3.9	37	91	0	234	23	17	31	27	1.97
58312403--58312477	27	2.8	26	80	8	87	40	24	8	28	1.83
58312471--58312736	27	9.9	27	85	2	329	38	18	16	25	1.92
58312463--58312736	54	5.1	54	87	2	363	38	18	16	25	1.92
58312463--58312736	81	3.4	81	86	3	363	38	18	16	25	1.92
58313195--58313291	6	15.8	6	71	16	65	19	18	16	45	1.86
58313172--58313282	31	3.5	31	91	1	159	18	17	15	48	1.81
58319354--58319620	40	6.7	40	97	0	480	22	27	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58324212--58324436	40	5.6	40	83	2	281	23	26	24	26	2.00
58324176--58324436	80	3.3	78	83	4	308	23	25	23	26	2.00
58326640--58326873	55	4.4	53	76	9	228	37	17	23	21	1.94
58326647--58326847	108	1.8	110	86	4	291	35	17	23	22	1.95
58326870--58326903	17	2.0	17	100	0	68	35	17	29	17	1.93
58327080--58327110	16	1.9	16	93	0	53	41	0	22	35	1.54
58339765--58339799	18	2.0	17	88	5	52	42	20	0	37	1.52
58340876--58341039	42	3.9	42	86	3	213	29	24	15	30	1.95
58341356--58341456	49	2.1	49	90	0	157	33	20	22	22	1.97
58342181--58342352	40	4.3	40	78	7	172	24	19	26	29	1.98
58342181--58342352	80	2.2	79	84	5	213	24	19	26	29	1.98
58349291--58349427	40	3.5	40	79	6	154	24	21	27	27	1.99
58350906--58351106	30	6.9	29	78	10	187	48	13	16	20	1.81
58350927--58351088	6	26.8	6	74	15	138	48	13	16	20	1.80
58351224--58351289	27	2.5	26	85	7	87	37	22	22	16	1.93
58351224--58351297	27	2.8	27	78	13	82	36	21	24	17	1.95
58351248--58351305	27	2.1	27	84	6	73	36	27	20	15	1.93
58351462--58351520	22	2.7	22	81	0	64	32	22	25	20	1.98
58351608--58351690	27	3.1	26	86	5	112	37	20	22	19	1.94
58351843--58351906	27	2.4	28	76	7	69	37	26	18	17	1.93
58351886--58352135	27	9.3	27	84	0	257	27	18	18	36	1.94
58351889--58352135	54	4.6	54	86	3	300	27	19	17	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58352147--58352495	27	12.9	27	85	2	432	40	9	21	28	1.84
58354521--58354608	30	2.9	30	87	1	122	54	13	11	20	1.69
58354531--58354617	30	2.8	31	87	5	115	52	12	13	20	1.73
58354575--58354687	25	4.6	24	74	10	77	49	13	15	21	1.79
58354492--58354662	24	7.1	24	70	13	91	52	12	14	21	1.74
58354537--58354677	73	1.9	73	89	2	221	51	12	14	21	1.75
58354513--58354662	6	24.8	6	68	16	69	52	12	14	21	1.73
58354492--58354664	18	9.6	18	69	13	61	52	12	14	21	1.74
58354527--58354687	73	2.2	72	84	4	216	50	13	14	21	1.76
58354804--58354869	27	2.5	27	80	11	82	37	21	22	18	1.94
58354822--58354877	27	2.1	27	83	6	69	37	21	25	16	1.93
58354828--58354885	27	2.1	27	81	6	64	37	27	20	13	1.91
58355042--58355100	22	2.7	22	81	0	64	32	22	25	20	1.98
58355191--58355270	27	2.9	28	85	7	94	37	20	23	18	1.94
58355297--58355327	16	1.9	16	93	0	53	35	16	19	29	1.93
58355468--58355689	27	8.3	27	84	2	232	26	18	18	36	1.94
58355470--58355689	81	2.7	81	84	2	264	26	18	18	36	1.94
58355484--58355689	107	1.9	108	89	3	317	26	17	19	36	1.94
58355694--58356264	27	21.2	27	84	3	668	41	9	21	27	1.85
58363775--58363813	21	1.9	20	84	5	51	30	2	20	46	1.64
58365052--58365101	14	3.5	14	74	15	57	48	10	20	22	1.79
58365051--58365108	29	2.0	29	100	0	116	44	10	20	24	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58375232--58375407	46	3.8	46	80	5	212	21	18	30	30	1.96
58375228--58375399	93	1.8	93	92	2	292	20	18	30	29	1.97
58387284--58387386	40	2.5	40	87	4	145	22	16	26	34	1.95
58397251--58397303	27	2.0	27	84	0	70	35	20	15	28	1.93
58400046--58400083	19	2.0	19	90	10	60	10	18	44	26	1.82
58400046--58400088	19	2.4	18	85	14	54	9	20	44	25	1.81
58402389--58402442	21	2.6	21	96	0	99	31	20	20	27	1.97
58407499--58407536	19	2.0	19	85	10	51	26	44	15	13	1.83
58408334--58408858	47	11.1	47	93	1	843	32	8	29	28	1.88
58408334--58408858	143	3.7	142	93	1	838	32	8	29	28	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344