genome.fa.s10.2.7.7.80.10.50.1000.190.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  190  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63533544--63533601	23	2.5	23	80	5	64	22	12	25	39	1.89
63536782--63536849	34	2.0	34	100	0	136	50	11	8	29	1.69
63537638--63537793	49	3.2	48	77	8	156	30	19	26	24	1.98
63537594--63537793	98	2.1	95	83	6	246	28	18	27	26	1.98
63545264--63545370	49	2.2	49	86	3	144	24	21	28	25	1.99
63547342--63547439	23	4.3	23	90	2	162	31	26	21	20	1.98
63547349--63547437	45	2.0	45	95	0	160	31	26	22	19	1.97
63549714--63549752	18	2.2	17	86	13	53	33	0	20	46	1.51
63549978--63550075	23	4.3	23	88	2	153	21	21	25	31	1.98
63549980--63550068	45	2.0	45	93	0	151	20	22	25	31	1.98
63554006--63554175	39	4.3	39	93	3	272	24	27	22	25	2.00
63554006--63554223	78	2.8	79	84	10	277	23	27	22	26	2.00
63554006--63554223	117	1.8	119	81	13	272	23	27	22	26	2.00
63565937--63565966	12	2.5	12	94	0	51	10	33	36	20	1.86
63571324--63571377	27	2.0	27	85	0	72	33	22	12	31	1.92
63571569--63571605	19	1.9	19	89	10	58	70	10	2	16	1.27
63573681--63573906	50	4.6	50	80	9	218	27	16	30	26	1.97
63573681--63573906	99	2.3	96	79	8	235	27	16	30	26	1.97
63597885--63597909	2	12.5	2	100	0	50	0	48	0	52	1.00
63606900--63606927	14	2.0	14	100	0	56	64	7	7	21	1.43
63610734--63610871	47	2.9	47	89	0	204	31	8	31	27	1.87
63610990--63611068	37	2.1	37	88	0	113	25	18	30	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63612769--63612836	6	11.3	6	71	10	50	75	0	4	20	0.98
63612805--63612838	13	2.6	13	85	0	50	73	0	5	20	1.04
63614124--63614180	29	1.9	30	89	3	89	57	21	1	19	1.49
63620265--63620461	55	3.6	54	76	4	182	19	22	19	38	1.93
63624766--63624817	25	2.1	25	96	0	95	28	15	13	42	1.85
63625870--63625954	33	2.6	33	81	1	109	61	2	18	17	1.46
63638122--63638229	26	4.2	26	91	0	180	33	7	23	36	1.83
63640887--63641217	177	1.9	177	85	2	459	28	21	19	31	1.97
63641163--63641307	45	3.2	45	88	0	193	30	20	20	28	1.97
63640985--63641412	222	1.9	222	83	3	549	27	21	19	31	1.98
63641192--63641936	177	4.2	178	87	2	953	26	21	19	32	1.97
63640927--63641794	399	2.2	397	78	9	861	27	21	18	32	1.97
63646536--63646578	21	2.1	20	91	4	68	48	13	11	25	1.77
63650124--63650169	19	2.4	19	85	7	58	43	13	23	19	1.86
63654062--63654090	6	4.8	6	100	0	58	0	68	0	31	0.89
63657627--63657919	120	2.4	120	94	2	500	41	3	4	50	1.39
63657752--63657793	15	2.9	15	82	10	52	47	0	0	52	1.00
63657881--63657922	15	2.7	16	82	14	52	45	0	2	52	1.13
63657872--63657913	15	2.9	15	82	10	52	47	0	0	52	1.00
63657856--63658172	157	2.0	157	93	1	546	47	5	3	43	1.43
63658224--63658314	45	2.0	45	85	2	121	37	28	6	27	1.82
63658295--63658363	16	4.2	16	96	3	129	37	37	0	24	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63658295--63658363	33	2.1	32	97	2	129	37	37	0	24	1.56
63660394--63660455	24	2.5	25	76	10	65	54	4	4	35	1.43
63660440--63660464	11	2.3	11	100	0	50	56	8	0	36	1.29
63660497--63660537	18	2.2	18	86	4	55	53	12	4	29	1.58
63660855--63660903	11	4.2	12	78	17	50	61	4	2	32	1.26
63660848--63660895	23	2.1	23	92	0	78	64	8	2	25	1.32
63660918--63660957	19	2.1	19	90	9	64	65	0	2	32	1.06
63662028--63662071	18	2.4	18	96	0	79	11	0	34	54	1.36
63662738--63662911	88	2.0	86	87	4	251	20	20	21	36	1.95
63662749--63662895	44	3.3	43	73	12	138	19	21	22	36	1.95
63674322--63674383	24	2.5	25	76	10	65	54	4	4	35	1.43
63674368--63674392	11	2.3	11	100	0	50	56	8	0	36	1.29
63674425--63674465	18	2.2	18	86	4	55	53	12	4	29	1.58
63674838--63674879	20	2.2	20	87	12	61	61	0	4	33	1.17
63678025--63678065	15	2.8	15	79	17	50	60	2	4	31	1.30
63678296--63678329	13	2.7	13	86	4	52	58	0	5	35	1.22
63678296--63678332	12	3.0	12	84	7	56	59	0	5	35	1.20
63678288--63678355	25	2.8	24	74	10	59	61	0	4	33	1.16
63678292--63678356	12	5.3	12	76	10	51	60	0	4	35	1.18
63679998--63680419	44	9.6	44	84	3	476	29	26	13	31	1.93
63679999--63680419	132	3.2	131	83	4	533	29	26	13	31	1.93
63692307--63692347	15	2.8	15	79	17	50	60	2	4	31	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63692353--63692451	39	2.6	37	75	15	94	55	2	9	33	1.43
63692873--63693032	26	6.2	26	91	0	257	34	7	22	35	1.82
63692873--63693032	52	3.1	52	95	0	284	34	7	22	35	1.82
63694491--63694543	26	2.0	26	85	7	72	37	18	15	28	1.91
63698940--63698980	15	2.8	15	79	17	50	60	2	4	31	1.30
63698986--63699084	39	2.6	37	75	15	94	55	2	9	33	1.43
63699213--63699246	13	2.7	13	86	4	52	58	0	5	35	1.22
63699213--63699249	12	3.0	12	84	7	56	59	0	5	35	1.20
63699205--63699272	25	2.8	24	74	10	59	61	0	4	33	1.16
63699209--63699273	12	5.3	12	76	10	51	60	0	4	35	1.18
63702461--63702513	22	2.4	22	93	0	88	30	52	3	13	1.57
63702785--63702841	26	2.2	25	87	9	80	8	7	3	80	1.00
63702785--63702841	13	4.5	13	75	4	53	8	7	3	80	1.00
63702785--63702841	25	2.2	26	84	9	73	8	7	3	80	1.00
63702785--63702837	20	2.8	18	72	10	52	9	5	3	81	0.98
63703752--63703821	3	22.3	3	80	8	77	30	7	2	60	1.38
63703823--63703874	20	2.7	19	82	11	54	23	13	3	59	1.50
63704170--63704200	15	2.1	15	100	0	62	32	6	0	61	1.21
63704281--63704334	3	18.3	3	78	3	56	29	5	0	64	1.16
63709114--63709167	24	2.2	24	83	0	72	72	0	18	9	1.11
63710502--63710658	45	3.4	44	69	17	129	29	21	21	27	1.98
63710468--63710658	95	2.0	95	95	2	348	30	21	20	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63710576--63711091	134	3.8	134	96	0	933	26	21	22	29	1.99
63710631--63711091	46	10.2	46	63	15	167	26	20	23	29	1.99
63711054--63711311	44	5.9	44	74	4	198	29	16	23	31	1.96
63711098--63711341	132	1.9	131	83	2	312	30	16	23	29	1.96
63711270--63711707	229	1.9	229	92	0	734	29	19	23	27	1.98
63712040--63712092	22	2.4	22	93	0	88	30	52	3	13	1.57
63712367--63712420	26	2.1	25	86	10	74	9	5	3	81	0.97
63712363--63712420	13	4.5	13	72	20	50	8	6	3	81	0.98
63712363--63712408	19	2.4	19	77	3	56	8	6	4	80	1.01
63713331--63713397	3	21.3	3	79	8	71	29	7	2	59	1.40
63713399--63713450	20	2.7	19	82	11	54	23	13	3	59	1.50
63713746--63713776	15	2.1	15	100	0	62	32	6	0	61	1.21
63713857--63713910	3	18.3	3	78	3	56	29	5	0	64	1.16
63715160--63715274	55	2.1	55	100	0	230	26	21	18	33	1.96
63716600--63716686	43	2.0	43	100	0	174	45	17	9	27	1.78
63716611--63716696	43	2.1	39	85	10	111	48	18	5	26	1.70
63717548--63717619	37	1.9	37	88	5	110	30	16	12	40	1.86
63718104--63718128	12	2.1	12	100	0	50	56	0	0	44	0.99
63719665--63719716	25	2.1	25	100	0	104	28	11	36	23	1.90
63720496--63720533	16	2.4	16	86	4	51	68	5	0	26	1.11
63720795--63720863	19	3.3	20	75	18	61	60	2	4	31	1.31
63720804--63720914	10	11.6	10	68	20	69	57	0	5	36	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63720804--63720914	12	9.1	12	68	17	50	57	0	5	36	1.28
63721523--63721580	17	3.4	17	97	0	107	17	44	29	8	1.78
63723900--63723997	27	3.5	28	90	2	135	26	13	28	31	1.94
63723928--63724010	27	3.0	27	87	5	96	30	12	25	32	1.92
63723900--63724011	28	4.0	27	83	6	98	28	12	25	33	1.92
63737633--63737816	97	1.9	98	93	1	316	25	17	26	29	1.98
63737632--63737816	49	3.8	49	77	7	214	25	17	26	30	1.98
63739212--63739374	46	3.6	45	80	7	154	23	28	19	28	1.98
63757385--63757438	23	2.3	23	90	0	90	29	33	25	11	1.91
63768621--63768886	145	1.8	146	81	7	335	28	20	22	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344