genome.fa.s10.2.7.7.80.10.50.1000.323.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A10
Parameters: 2 7 7 80 10 50 1000
Length:  111961792

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   

This is table  323  of  344  ( 41197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105681319--105681412	46	2.1	45	88	4	136	30	29	19	20	1.97
105683535--105683565	14	2.2	14	100	0	62	41	19	6	32	1.77
105686286--105686313	14	2.0	14	100	0	56	21	0	7	71	1.09
105686317--105686351	17	1.9	19	88	11	56	20	2	11	65	1.37
105687523--105687567	22	2.0	22	100	0	90	37	8	13	40	1.76
105690636--105690688	28	1.9	27	88	3	79	54	9	9	26	1.63
105695737--105695766	15	2.0	15	93	0	51	33	30	20	16	1.94
105711739--105711778	16	2.5	16	84	8	55	17	30	0	52	1.45
105717970--105718105	43	3.2	43	80	5	123	34	22	15	27	1.94
105720723--105720766	22	2.0	22	86	0	61	52	0	0	47	1.00
105720786--105720825	13	2.9	14	82	17	57	55	0	0	45	0.99
105720858--105720914	15	3.5	15	71	17	51	49	0	1	49	1.11
105720860--105720896	19	1.9	19	88	0	56	48	0	0	51	1.00
105721923--105722028	40	2.7	41	82	10	123	38	14	9	37	1.78
105721924--105722038	20	5.8	20	75	10	101	39	13	9	37	1.78
105722195--105722283	20	4.5	20	72	8	74	35	12	13	38	1.82
105722349--105722415	20	3.3	20	78	12	75	32	10	14	41	1.80
105725082--105725172	30	3.1	30	96	1	166	36	23	15	25	1.94
105733380--105733404	13	1.9	13	100	0	50	16	44	32	8	1.76
105734119--105734176	28	2.0	28	86	10	80	68	0	3	27	1.05
105734118--105734163	22	2.2	21	82	14	60	71	0	6	21	1.08
105734150--105734196	19	2.5	19	96	0	85	61	4	4	29	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105734342--105734390	23	2.1	23	100	0	98	26	16	18	38	1.91
105734535--105734573	7	5.4	7	96	3	69	56	0	0	43	0.99
105734583--105734674	10	9.8	9	70	20	57	29	3	2	65	1.20
105734603--105734662	17	3.6	17	82	10	63	21	5	1	71	1.14
105734603--105734658	8	6.6	8	75	18	51	23	3	1	71	1.11
105734602--105734660	27	2.2	26	77	16	68	22	3	1	72	1.08
105734685--105734749	30	2.2	30	79	17	75	16	6	1	75	1.08
105734865--105734911	20	2.3	20	89	7	69	34	2	2	61	1.20
105734848--105734909	21	3.0	21	81	11	65	30	4	1	62	1.25
105737605--105737680	38	2.0	38	97	0	143	39	17	15	27	1.90
105737652--105737836	92	2.0	92	96	0	343	43	20	12	23	1.86
105738279--105738332	17	3.4	17	66	23	53	40	18	14	25	1.89
105738271--105738333	31	2.0	31	100	0	126	42	15	15	25	1.87
105742328--105742383	26	2.2	25	84	9	69	30	3	3	62	1.29
105742319--105742383	26	2.5	24	75	18	60	29	6	4	60	1.41
105742493--105742518	11	2.4	11	100	0	52	53	0	0	46	1.00
105742801--105742839	17	2.3	17	90	0	60	61	2	0	35	1.10
105745618--105745665	24	2.0	24	92	8	80	47	14	0	37	1.44
105755280--105755327	24	2.0	24	92	8	80	37	0	14	47	1.44
105767566--105767681	58	2.0	58	100	0	232	36	6	24	32	1.82
105769218--105769251	18	1.9	17	88	5	50	0	14	2	82	0.79
105773999--105774043	22	2.0	21	83	8	54	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105774706--105774739	6	5.8	6	86	6	52	88	0	11	0	0.52
105777227--105777326	21	4.9	21	71	7	71	45	17	22	16	1.86
105777227--105777369	42	3.6	42	76	15	142	44	17	20	17	1.87
105777256--105777362	21	5.4	21	66	18	68	42	14	22	20	1.89
105777294--105777362	36	1.9	36	93	0	120	44	15	18	20	1.86
105782524--105782581	29	2.0	30	83	10	75	46	3	5	44	1.42
105784761--105784808	24	2.0	24	95	0	87	31	8	12	47	1.71
105787196--105787237	21	2.0	21	90	0	66	14	33	23	28	1.94
105787202--105787245	21	2.1	21	86	0	61	13	29	29	27	1.94
105789305--105789406	47	2.2	45	78	15	109	47	13	13	25	1.80
105789683--105789740	30	1.9	30	82	6	73	22	31	27	18	1.97
105794232--105794264	5	6.8	5	89	3	50	42	33	0	24	1.55
105798272--105798367	47	2.0	49	92	8	162	19	13	21	44	1.85
105811798--105811838	19	2.2	19	95	0	73	26	21	7	43	1.79
105821517--105821559	20	2.2	19	83	4	50	37	16	9	37	1.81
105825948--105826014	31	2.2	31	83	5	82	47	8	10	32	1.69
105825958--105826018	31	2.0	31	93	0	104	45	8	9	36	1.67
105831184--105831223	19	2.1	19	86	9	55	72	2	2	22	1.09
105835086--105835190	27	3.9	27	84	9	126	33	21	25	19	1.97
105836742--105836849	26	4.2	26	86	4	146	36	25	7	31	1.83
105836744--105836846	52	2.0	52	90	0	161	35	25	7	31	1.84
105845380--105845487	26	4.2	26	87	0	162	36	25	7	31	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105854587--105854667	40	2.0	40	97	0	153	35	22	8	33	1.85
105858669--105858695	7	3.9	7	100	0	54	70	14	0	14	1.17
105865435--105865746	156	2.0	156	98	0	606	47	10	13	27	1.76
105865939--105865987	24	2.0	24	84	0	62	36	0	4	59	1.17
105866110--105866153	21	2.0	23	86	8	65	47	2	2	47	1.27
105867751--105867865	56	2.1	56	98	0	221	52	10	7	29	1.64
105871550--105871699	38	3.9	38	94	1	246	30	18	3	47	1.65
105871550--105871699	77	1.9	77	91	2	248	30	18	3	47	1.65
105871550--105871702	39	4.0	38	94	1	243	30	18	3	47	1.65
105872302--105872346	22	2.0	24	83	12	60	31	31	4	33	1.78
105872795--105872819	13	1.9	13	100	0	50	8	28	16	48	1.74
105872802--105872887	44	2.0	43	90	6	138	26	27	15	30	1.96
105872984--105873763	204	3.8	203	96	1	1383	28	23	18	29	1.98
105901375--105901416	18	2.3	18	84	8	50	47	0	0	52	1.00
105901538--105901598	23	2.5	23	78	7	59	47	3	4	44	1.41
105901670--105901709	18	2.2	18	86	0	53	67	2	2	27	1.16
105905622--105905679	29	2.0	29	100	0	116	44	20	20	13	1.85
105906314--105906360	24	2.0	24	83	8	60	31	6	2	59	1.34
105906691--105906732	10	3.9	10	85	14	57	47	11	2	38	1.53
105911195--105911262	32	2.2	30	81	5	73	41	2	13	42	1.59
105913594--105913640	15	3.1	15	80	17	53	31	0	0	68	0.90
105913599--105913653	26	2.1	25	83	12	67	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105913597--105913656	17	3.6	17	78	10	70	31	0	0	68	0.90
105913681--105913751	18	3.9	18	72	12	56	45	4	2	47	1.36
105917130--105917208	31	2.6	30	82	6	88	45	7	7	39	1.61
105917555--105917617	16	3.9	16	72	8	56	58	1	1	38	1.17
105918851--105918926	15	5.1	15	69	6	64	5	27	18	48	1.69
105918842--105918926	30	2.8	30	82	7	109	4	27	18	49	1.67
105921418--105921456	19	2.1	19	85	0	51	46	0	10	43	1.37
105921523--105921569	19	2.4	19	79	17	51	46	0	0	53	1.00
105927569--105927604	16	2.2	16	100	0	72	25	0	36	38	1.56
105927585--105927675	45	2.0	45	85	2	121	27	6	28	37	1.82
105927840--105927874	18	2.0	17	88	5	52	54	0	0	45	0.99
105927855--105928042	61	3.1	61	70	14	199	48	6	1	42	1.39
105927939--105927990	15	3.6	15	80	12	56	53	1	0	44	1.11
105927823--105928115	120	2.4	121	94	1	518	49	5	2	42	1.37
105928056--105928338	91	3.0	93	84	7	317	48	3	3	44	1.35
105928156--105928216	28	2.2	28	85	5	81	50	3	0	45	1.17
105928163--105928306	47	3.1	46	65	23	113	49	4	2	44	1.33
105928131--105928338	91	2.3	90	90	4	326	46	4	3	45	1.39
105928156--105928298	44	3.2	43	68	16	119	48	3	2	46	1.31
105928181--105928319	47	3.0	47	68	17	137	49	4	2	43	1.34
105932189--105932224	18	2.0	18	100	0	72	27	11	16	44	1.82
105933909--105933945	7	5.3	7	90	0	56	37	5	29	27	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105933870--105933983	58	2.0	58	92	0	192	32	14	24	28	1.95
105937291--105937332	15	3.0	15	80	16	54	0	33	0	66	0.92
105945130--105945180	11	5.0	10	81	9	59	78	1	11	7	1.04
105945130--105945176	21	2.2	21	85	7	60	76	2	12	8	1.09
105947344--105947397	28	2.0	27	89	7	83	61	3	0	35	1.14
105952467--105952690	111	2.0	111	96	0	412	26	12	19	41	1.86
105963725--105963761	17	2.1	18	90	5	58	64	0	0	35	0.94
105967377--105967444	33	2.0	34	97	2	129	42	5	8	42	1.60
105968481--105968549	31	2.2	31	89	0	102	44	8	13	33	1.74
105976126--105976153	10	2.8	10	100	0	56	57	10	0	32	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344