Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  109  of  345  ( 41379 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29283277--29283333
30
1.9
30
82
10
73
42
17
10
29
1.83
29288824--29288883
9
6.8
9
72
11
52
31
5
0
63
1.16
29288831--29288890
26
2.4
25
88
2
84
31
5
0
63
1.16
29288858--29288893
16
2.1
18
90
10
58
38
0
0
61
0.96
29291439--29291573
40
3.4
40
90
2
227
28
28
22
20
1.99
29294246--29294297
21
2.4
21
77
6
59
44
7
7
40
1.62
29299472--29299617
57
2.5
58
76
9
136
23
19
15
41
1.90
29299657--29299725
31
2.3
30
82
5
95
34
15
18
30
1.93
29301696--29301728
2
17.0
2
93
6
59
51
0
0
48
1.00
29311194--29311227
15
2.4
14
90
9
52
38
5
2
52
1.41
29313044--29313076
2
16.5
2
100
0
66
48
0
0
51
1.00
29370050--29370093
21
2.1
21
100
0
88
29
13
13
43
1.83
29370995--29371032
17
2.1
19
85
9
53
57
13
0
28
1.36
29370992--29371042
18
2.7
19
76
14
52
60
11
0
27
1.31
29377846--29377872
2
13.5
2
100
0
54
51
0
0
48
1.00
29379344--29379847
126
4.0
126
84
4
592
35
15
18
30
1.92
29383931--29383963
14
2.3
15
85
15
52
60
12
0
27
1.32
29384796--29384923
47
2.7
46
83
8
150
53
6
11
28
1.61
29385052--29385107
11
5.3
11
76
6
53
35
5
16
42
1.70
29390934--29390971
20
2.0
20
89
5
60
42
13
2
42
1.57
29393733--29393766
12
2.9
12
86
4
52
32
0
0
67
0.91
29393974--29394013
11
3.6
11
82
0
53
60
10
10
20
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29394560--29394584
2
12.5
2
100
0
50
52
0
0
48
1.00
29398769--29398870
28
3.5
29
81
6
109
28
27
14
29
1.95
29400792--29400993
82
2.5
82
87
0
296
32
10
7
49
1.65
29401833--29401885
18
3.1
17
73
21
56
7
30
5
56
1.50
29410051--29410077
12
2.2
12
100
0
54
22
0
0
77
0.76
29410046--29410085
20
2.0
20
90
0
62
25
0
0
75
0.81
29410377--29410467
41
2.2
41
96
3
166
48
2
16
32
1.58
29411673--29411705
10
3.5
10
84
16
52
27
0
0
72
0.85
29414000--29414047
10
5.2
10
76
16
50
37
2
0
60
1.09
29414202--29414265
27
2.4
27
87
7
87
59
3
3
34
1.29
29414415--29414475
27
2.3
26
80
8
61
36
0
4
59
1.19
29415780--29415833
20
2.6
21
80
16
67
64
0
0
35
0.94
29415779--29415833
19
2.8
20
81
15
62
65
0
0
34
0.93
29415788--29415887
52
1.9
51
80
11
114
64
3
1
32
1.16
29416044--29416116
29
2.5
29
84
10
96
30
8
5
56
1.51
29418959--29418999
2
20.5
2
100
0
82
48
0
0
51
1.00
29420174--29420206
17
1.9
17
93
0
57
39
30
9
21
1.84
29423848--29423885
2
19.0
2
100
0
76
50
50
0
0
1.00
29426791--29426850
31
2.0
29
83
6
75
43
8
8
40
1.65
29431111--29431151
21
1.9
22
90
5
66
60
0
0
39
0.96
29435250--29435349
33
3.0
33
88
0
146
44
6
13
37
1.68
29436310--29436342
3
11.3
3
93
6
59
30
0
0
69
0.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29437546--29437634
45
2.0
45
100
0
178
28
13
13
44
1.81
29441564--29441588
2
12.5
2
100
0
50
52
48
0
0
1.00
29442936--29443002
22
3.3
22
64
23
65
43
4
22
29
1.73
29442927--29443010
38
2.2
38
95
0
150
45
3
21
29
1.69
29444106--29444169
31
2.1
31
90
0
101
25
23
15
35
1.94
29444372--29444522
24
6.4
24
92
5
245
27
21
21
29
1.99
29444372--29444522
70
2.1
71
93
2
259
27
21
21
29
1.99
29444571--29444637
20
3.3
20
93
0
116
32
20
11
34
1.90
29444571--29444626
11
5.5
11
71
16
57
32
19
12
35
1.89
29444674--29444721
25
1.9
25
86
0
69
25
16
25
33
1.96
29452203--29452265
31
2.1
31
90
3
101
23
23
15
36
1.94
29452449--29452567
24
5.0
24
89
5
179
27
21
21
28
1.99
29452449--29452567
47
2.5
48
90
5
179
27
21
21
28
1.99
29452615--29452681
20
3.3
20
93
0
116
32
20
11
34
1.90
29452615--29452670
11
5.5
11
71
16
57
32
19
12
35
1.89
29456163--29456189
8
3.4
8
100
0
54
74
0
0
25
0.83
29458652--29458696
16
2.9
15
83
9
54
42
0
0
57
0.98
29458995--29459044
26
2.0
24
88
7
73
64
6
0
30
1.18
29458988--29459073
21
3.9
21
73
18
59
69
6
0
23
1.12
29459120--29459152
15
2.1
16
88
11
50
69
0
0
30
0.88
29459346--29459420
16
4.7
16
70
20
59
45
0
5
49
1.25
29459362--29459424
31
2.0
32
85
11
87
49
0
4
46
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29459517--29459573
2
29.0
2
96
3
107
49
0
0
50
1.00
29460678--29460784
45
2.3
47
84
7
130
18
21
20
39
1.93
29467269--29467365
51
1.9
51
87
8
144
27
24
14
32
1.94
29467389--29467556
52
3.2
52
90
5
248
23
23
15
37
1.93
29467389--29467585
28
7.5
27
82
12
232
23
22
15
38
1.92
29467402--29467593
52
3.7
54
88
5
206
22
21
16
39
1.92
29467401--29467596
80
2.5
80
90
3
292
22
21
16
39
1.92
29476069--29476185
60
2.0
60
88
6
175
37
12
11
38
1.79
29476381--29476516
62
2.2
60
87
7
186
36
11
19
33
1.87
29488227--29488259
14
2.4
14
94
0
57
33
15
15
36
1.88
29493003--29493037
17
2.1
17
88
0
52
54
14
20
11
1.70
29495480--29495533
24
2.3
23
78
9
54
72
7
0
20
1.08
29495711--29495773
22
2.9
22
92
4
92
58
17
15
7
1.60
29495722--29495773
22
2.4
22
100
0
104
57
19
15
7
1.62
29495991--29496020
1
30.0
1
100
0
60
100
0
0
0
0.00
29499063--29499102
16
2.6
16
84
4
55
47
5
0
47
1.24
29502420--29502453
15
2.3
15
89
0
50
35
2
0
61
1.11
29509667--29509814
42
3.6
42
81
3
149
41
16
23
18
1.89
29509667--29509766
21
4.8
21
70
4
76
42
16
25
17
1.88
29512244--29512269
13
2.0
13
100
0
52
15
0
0
84
0.62
29517406--29517454
23
2.1
23
100
0
98
36
28
0
34
1.58
29522491--29522528
10
3.8
10
96
0
67
23
10
0
65
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29522483--29522531
20
2.7
17
77
17
53
22
10
2
65
1.34
29533487--29533740
3
85.3
3
70
13
105
57
2
8
31
1.42
29533442--29533502
22
2.8
22
80
2
61
68
6
6
18
1.33
29533740--29533771
16
2.0
16
93
0
55
50
6
21
21
1.71
29533875--29533917
16
2.8
15
86
6
59
62
0
6
30
1.21
29534012--29534041
3
10.0
3
100
0
60
66
0
0
33
0.92
29534135--29534172
3
12.7
3
100
0
76
65
0
0
34
0.93
29534647--29534703
25
2.2
25
90
3
87
49
21
5
24
1.70
29534652--29534711
25
2.6
23
84
7
68
40
23
3
33
1.71
29535260--29536049
205
3.9
205
94
1
1327
29
22
18
29
1.98
29544080--29544129
15
3.5
14
79
15
50
42
8
24
26
1.82
29547975--29548213
3
80.3
3
68
14
75
56
2
9
31
1.44
29547930--29547990
22
2.8
22
80
2
61
68
6
6
18
1.33
29548213--29548244
16
2.0
16
93
0
55
50
6
21
21
1.71
29548348--29548390
16
2.8
15
86
6
59
62
0
6
30
1.21
29548485--29548520
3
12.0
3
100
0
72
66
0
0
33
0.92
29548614--29548657
3
14.7
3
100
0
88
65
0
0
34
0.93
29549115--29549187
26
2.6
29
80
14
98
47
20
5
26
1.71
29550425--29550463
19
2.1
19
100
0
78
33
0
0
66
0.92
29550425--29550461
9
4.0
9
93
6
65
32
0
0
67
0.91
29551276--29551304
2
14.5
2
100
0
58
48
0
0
51
1.00
29560382--29560423
21
2.0
21
86
9
59
40
11
9
38
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29560776--29560831
29
1.9
29
82
7
69
33
10
17
37
1.85
29561798--29561955
83
1.9
81
85
2
217
36
21
8
34
1.83
29577378--29577412
2
17.5
2
93
0
61
45
2
0
51
1.16
29578992--29579377
193
2.0
193
98
0
754
34
13
23
28
1.92
29580010--29580037
2
14.0
2
100
0
56
50
0
50
0
1.00
29589179--29589240
31
2.0
31
96
0
115
32
37
14
16
1.89
29593899--29594038
44
3.3
42
80
7
122
24
19
25
31
1.98
29593945--29594039
42
2.2
42
81
1
109
27
16
24
31
1.97
29602369--29602422
28
1.9
28
85
7
74
66
0
5
27
1.13
29604440--29604485
24
2.0
21
84
12
56
63
2
0
34
1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345