genome.fa.s12.2.7.7.80.10.50.1000.199.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  199  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56887141--56887272	59	2.3	58	97	1	246	37	14	24	24	1.92
56887111--56887272	88	1.8	89	90	1	263	35	14	24	25	1.93
56887141--56887272	29	4.5	29	97	1	246	37	14	24	24	1.92
56892030--56892160	30	4.5	30	86	8	171	28	25	13	32	1.94
56892029--56892160	58	2.3	58	85	4	176	28	26	13	31	1.94
56899019--56899043	11	2.3	11	100	0	50	32	0	24	44	1.54
56902887--56902920	13	2.5	14	90	4	52	55	11	0	32	1.36
56906926--56907099	46	3.7	46	78	7	165	27	18	29	24	1.98
56911877--56912038	58	2.8	59	85	3	195	26	16	32	25	1.96
56911877--56911978	29	3.5	29	94	0	186	29	14	29	26	1.95
56919703--56919864	58	2.8	59	85	3	195	26	16	32	25	1.96
56919703--56919804	29	3.5	29	94	0	186	29	14	29	26	1.95
56919897--56919921	2	12.5	2	100	0	50	48	0	0	52	1.00
56924403--56924448	22	2.1	22	83	0	56	30	17	34	17	1.93
56935428--56935586	43	3.7	43	74	10	155	25	17	25	31	1.97
56937509--56937730	46	4.7	46	80	8	234	27	19	30	22	1.98
56937511--56937776	94	2.8	93	82	8	283	27	19	29	23	1.98
56937514--56937776	140	1.9	141	82	5	336	28	19	29	23	1.98
56938915--56938955	22	1.9	22	95	5	75	9	43	29	17	1.80
56945191--56945412	46	4.7	46	79	9	218	27	18	31	23	1.97
56945194--56945461	47	5.7	46	79	12	212	28	18	29	23	1.98
56946686--56946726	22	1.9	22	95	5	75	9	43	29	17	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56952468--56952519	26	2.0	27	92	3	88	40	7	3	48	1.50
56954608--56954908	49	6.3	49	91	3	470	29	30	7	32	1.86
56954608--56954908	96	3.1	96	94	1	498	29	30	7	32	1.86
56955745--56955790	22	2.1	22	100	0	92	23	21	17	36	1.94
56960613--56960847	125	1.9	122	83	7	305	28	18	17	34	1.94
56960924--56960961	12	3.2	12	85	3	51	60	2	0	36	1.11
56961656--56961841	52	3.5	53	75	17	174	58	2	1	37	1.22
56961800--56961870	31	2.3	31	77	18	76	56	0	1	42	1.08
56961817--56961856	18	2.2	18	86	8	55	52	0	0	47	1.00
56961825--56961870	24	2.0	23	91	4	74	54	0	2	43	1.12
56968833--56968891	29	2.0	29	100	0	118	45	16	13	23	1.83
56971590--56971651	31	2.0	31	96	0	115	19	17	22	40	1.91
56973691--56973857	46	3.6	46	75	10	160	21	18	27	32	1.97
56977332--56977366	18	1.9	18	94	0	61	42	2	0	54	1.15
56985431--56985475	15	3.0	15	87	12	74	22	6	26	44	1.77
56994264--56994335	12	6.0	12	72	22	53	51	1	2	44	1.24
56994954--56994986	11	2.8	12	86	4	50	51	12	3	33	1.54
56998868--56998919	27	1.9	27	92	0	86	19	15	28	36	1.92
57000686--57000791	37	2.9	37	92	0	176	26	31	17	24	1.97
57001009--57001194	47	4.0	47	92	0	300	26	28	11	33	1.91
57001047--57001165	23	5.1	22	62	28	59	24	30	13	31	1.93
57006279--57006441	39	4.2	39	91	0	263	23	33	20	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57012946--57013112	40	4.2	40	79	6	169	26	22	26	24	2.00
57016693--57016805	40	2.8	40	85	1	138	26	31	21	20	1.98
57018978--57019329	40	8.8	40	89	0	497	25	27	21	25	2.00
57020602--57020710	37	2.9	37	94	0	182	26	31	20	22	1.98
57020917--57021110	47	4.1	47	86	1	255	29	28	8	33	1.87
57021032--57021111	25	3.3	25	68	16	69	32	27	6	33	1.82
57024607--57024650	18	2.7	16	86	10	54	54	2	0	43	1.12
57024632--57024678	20	2.6	18	76	23	53	72	2	2	23	1.06
57024844--57024887	2	22.0	2	85	0	61	56	0	0	43	0.99
57025134--57025200	31	2.2	30	81	7	73	35	1	1	61	1.15
57025175--57025228	21	2.6	21	85	2	74	40	0	1	57	1.09
57029550--57029590	21	2.0	21	90	0	64	29	21	29	19	1.98
57032716--57032742	6	4.5	6	100	0	54	0	14	0	85	0.61
57033148--57033219	28	2.5	30	80	8	87	48	0	1	50	1.09
57036305--57036346	18	2.2	19	83	8	50	59	16	0	23	1.37
57037951--57038010	21	2.9	21	84	0	75	25	26	31	16	1.96
57039616--57039876	46	5.6	45	78	9	211	27	19	29	23	1.98
57039616--57039876	140	1.9	140	82	3	328	27	19	29	23	1.98
57041021--57041059	21	1.9	21	89	5	62	12	38	28	20	1.89
57042082--57042404	96	3.4	97	80	1	283	23	28	20	28	1.99
57042082--57042417	48	7.0	46	74	7	197	23	27	20	27	1.99
57044128--57044277	50	3.0	50	85	0	203	26	16	28	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57052740--57052807	35	1.9	35	100	0	136	23	5	20	50	1.70
57054373--57054519	50	3.0	50	81	1	170	25	15	27	31	1.96
57062484--57062529	21	2.2	21	88	0	65	26	19	34	19	1.96
57063233--57063265	17	1.9	17	93	0	57	75	18	0	6	1.00
57063227--57063273	14	3.1	14	77	16	58	72	19	0	8	1.10
57066702--57067320	48	12.9	48	79	6	630	23	29	19	26	1.98
57066702--57067320	144	4.3	144	89	1	893	23	29	19	26	1.98
57070659--57070698	21	1.9	21	85	10	55	45	0	17	37	1.49
57071214--57071299	24	3.5	24	79	4	75	13	17	22	46	1.83
57071235--57071313	24	3.3	25	79	10	67	16	17	21	44	1.87
57081677--57081720	22	2.0	22	95	0	79	34	9	6	50	1.61
57081680--57081720	12	3.6	12	77	12	50	34	9	4	51	1.56
57082622--57082659	19	2.0	20	84	5	51	36	18	0	44	1.50
57096174--57096315	40	3.5	40	83	1	124	27	23	26	22	1.99
57096213--57096341	40	3.2	39	84	6	152	24	22	27	25	2.00
57105521--57105662	40	3.5	40	83	1	124	27	23	26	22	1.99
57105560--57105688	40	3.2	39	84	6	152	24	22	27	25	2.00
57113524--57113690	40	4.2	40	79	6	169	26	22	26	24	2.00
57120197--57120258	30	2.1	30	96	0	115	35	24	16	24	1.95
57133382--57133564	79	2.3	79	82	3	233	24	29	21	25	1.99
57133382--57133575	40	4.9	39	83	1	226	24	29	20	24	1.99
57137517--57137578	30	2.1	30	100	0	124	35	22	16	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57155707--57155865	40	4.0	39	81	8	158	28	22	25	24	1.99
57155718--57155873	80	2.0	80	84	7	210	27	23	25	23	2.00
57155763--57155888	40	3.2	40	86	0	180	24	23	26	24	2.00
57161526--57161693	40	4.2	40	80	4	169	23	27	23	25	2.00
57169342--57169512	79	2.2	79	84	4	211	26	19	26	26	1.99
57169336--57169512	40	4.5	40	80	9	184	25	20	27	25	1.99
57170866--57171036	93	1.8	93	93	0	297	28	28	21	21	1.98
57170862--57171033	46	3.7	46	79	10	197	29	27	20	21	1.98
57179464--57179574	58	1.9	57	83	3	143	48	18	18	13	1.80
57180803--57181326	176	3.0	177	83	4	637	28	18	26	26	1.98
57182912--57182947	15	2.3	16	90	4	56	33	11	0	55	1.35
57185172--57185388	46	4.7	46	77	11	192	30	17	26	24	1.98
57191293--57191322	13	2.4	12	94	5	51	60	0	0	40	0.97
57191367--57191436	11	6.2	11	74	12	61	75	2	18	2	1.05
57192092--57192138	24	2.0	24	84	16	62	31	0	17	51	1.46
57192115--57192173	11	5.9	11	77	18	51	37	0	10	52	1.35
57195595--57195902	46	6.5	47	74	11	224	23	29	19	28	1.98
57195732--57195905	94	1.9	92	85	7	244	24	29	20	26	1.99
57195599--57195902	140	2.1	142	82	8	352	23	29	19	28	1.98
57198187--57198261	37	2.0	37	100	0	150	42	21	8	28	1.81
57206442--57206477	18	2.1	17	89	5	54	36	16	13	33	1.89
57208579--57208625	22	2.1	22	96	0	85	34	17	6	42	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57210539--57210853	48	6.6	47	75	6	193	28	20	28	22	1.98
57210625--57210856	96	2.4	96	86	0	302	29	21	28	21	1.98
57217460--57217670	49	4.3	49	92	1	327	31	7	31	29	1.85
57217489--57217571	27	3.3	27	60	16	68	31	4	30	33	1.79
57222071--57222157	43	2.0	43	100	0	174	41	13	20	24	1.89
57224159--57224235	9	8.6	9	72	5	57	45	15	9	29	1.77
57224158--57224235	27	2.9	27	80	0	93	46	15	8	29	1.76
57224166--57224227	18	3.4	18	80	4	63	43	16	9	30	1.80
57224514--57224561	18	2.7	18	93	0	78	27	18	16	37	1.92
57229468--57229511	19	2.4	19	85	7	56	50	0	9	40	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345