genome.fa.s12.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  150  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41081222--41081415	107	1.8	107	80	2	237	32	22	7	37	1.81
41081491--41081738	27	9.3	27	87	3	340	35	19	20	24	1.96
41081491--41081738	53	4.6	54	86	4	331	35	19	20	24	1.96
41081491--41081738	80	3.1	79	87	1	343	35	19	20	24	1.96
41081491--41081738	107	2.3	107	86	2	356	35	19	20	24	1.96
41082139--41082209	31	2.3	31	92	0	124	19	15	15	49	1.80
41082174--41082237	25	2.6	25	87	0	83	18	20	15	45	1.86
41082139--41082242	6	16.8	6	70	16	61	19	19	14	47	1.83
41084215--41084351	56	2.4	57	88	2	222	32	18	18	29	1.95
41084215--41084370	56	2.8	57	82	7	210	32	19	17	30	1.95
41086155--41086218	31	2.1	31	87	0	92	25	23	15	35	1.94
41086459--41086503	23	2.0	23	95	0	81	31	22	22	24	1.99
41086557--41086614	20	2.9	20	100	0	116	31	20	13	34	1.92
41086555--41086621	20	3.3	20	91	0	98	31	22	13	32	1.92
41089110--41089153	19	2.4	18	85	7	54	40	9	0	50	1.34
41091142--41091205	31	2.1	31	87	0	92	23	21	17	37	1.94
41091399--41091515	23	5.0	24	88	7	161	29	22	19	28	1.98
41091565--41091629	20	3.2	20	93	0	112	32	21	12	33	1.90
41091565--41091618	11	5.3	11	70	17	53	31	20	12	35	1.90
41091665--41091712	25	2.0	24	83	4	60	29	16	20	33	1.95
41094022--41094118	48	2.0	47	82	11	117	53	8	2	36	1.43
41094116--41094159	19	2.4	18	85	7	54	40	9	0	50	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41099978--41100140	70	2.3	71	98	1	319	19	28	17	34	1.94
41099978--41100174	70	2.8	70	90	4	249	20	28	17	33	1.95
41110346--41110467	43	2.9	42	80	11	158	30	15	25	28	1.96
41112481--41112555	25	3.0	23	78	16	71	25	21	24	29	1.99
41112490--41112555	25	2.6	25	90	0	105	24	24	25	25	2.00
41112606--41112653	20	2.3	21	92	3	80	35	18	10	35	1.85
41116076--41116257	24	7.6	24	94	0	303	20	18	25	35	1.95
41116076--41116279	48	4.3	48	87	6	220	22	18	25	34	1.96
41116076--41116279	72	2.8	72	91	2	268	22	18	25	34	1.96
41123014--41123097	29	2.8	30	81	13	102	29	25	16	28	1.97
41123317--41123382	25	2.6	25	90	0	96	24	24	27	24	2.00
41123434--41123480	20	2.3	21	92	3	78	34	19	10	36	1.86
41136002--41136102	26	3.9	26	72	21	86	62	2	4	29	1.31
41136000--41136054	22	2.5	21	80	13	58	61	0	7	30	1.23
41136003--41136090	13	6.8	12	72	22	56	62	2	4	30	1.27
41135973--41136084	30	3.8	28	71	25	86	63	3	5	27	1.33
41135997--41136088	29	3.1	29	73	23	84	63	3	4	29	1.30
41136020--41136102	44	1.9	42	81	13	98	62	3	4	28	1.32
41136125--41136184	25	2.4	25	83	8	77	63	0	3	33	1.11
41136140--41136186	18	2.8	17	78	18	53	63	0	2	34	1.06
41137446--41137478	17	1.9	17	93	0	57	18	6	6	69	1.30
41137625--41137807	80	2.3	80	82	1	217	30	22	15	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41137769--41137940	44	3.9	45	81	3	188	26	26	16	30	1.97
41137772--41137952	89	2.1	85	81	6	202	24	28	17	29	1.97
41137885--41138093	73	2.7	77	87	8	291	26	27	16	29	1.97
41137954--41138181	44	5.2	45	78	12	210	27	26	16	28	1.97
41151167--41151390	40	5.6	40	83	6	283	25	26	23	24	2.00
41151167--41151390	83	2.8	80	87	5	301	25	26	23	24	2.00
41153449--41153554	32	3.3	33	80	9	112	63	4	4	27	1.35
41153477--41153586	38	2.9	38	74	17	97	61	3	3	30	1.30
41153477--41153573	12	7.8	12	68	23	51	62	3	3	30	1.25
41154947--41154979	17	1.9	17	93	0	57	18	6	6	69	1.30
41176653--41176761	42	2.6	42	78	5	114	29	22	20	27	1.98
41179984--41180149	49	3.6	48	73	13	166	22	21	19	36	1.95
41179955--41180144	90	2.1	90	94	0	326	23	20	20	36	1.95
41183662--41183699	19	2.0	19	100	0	76	57	10	5	26	1.53
41185128--41185228	32	2.9	35	81	17	129	20	28	25	24	1.99
41193060--41193113	26	2.1	26	89	6	83	20	33	22	24	1.97
41209533--41209557	13	1.9	13	100	0	50	32	16	16	36	1.90
41209908--41210152	43	5.7	43	92	0	364	25	20	28	24	1.99
41209908--41210151	87	2.8	87	90	1	375	25	20	29	25	1.99
41209908--41210152	130	1.9	129	91	0	400	25	20	28	24	1.99
41210535--41210580	21	2.2	21	84	0	56	2	50	19	28	1.60
41216271--41216487	9	23.4	9	79	5	175	38	1	13	46	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41216218--41216488	18	15.3	18	76	8	189	38	1	13	46	1.54
41216271--41216488	27	7.9	27	80	8	213	38	1	13	46	1.54
41216194--41216415	114	1.9	114	85	3	304	38	1	12	47	1.50
41216592--41216647	15	3.8	15	76	21	64	51	0	1	46	1.11
41217379--41217425	25	1.9	25	83	12	62	51	6	8	34	1.58
41221175--41221206	15	2.1	15	94	0	55	31	9	0	59	1.29
41222219--41222437	41	5.4	41	93	0	368	17	24	25	32	1.97
41225126--41225159	18	1.9	17	94	5	59	8	17	8	64	1.47
41226282--41226329	25	1.9	25	86	0	69	33	25	16	25	1.96
41226377--41226432	11	5.5	11	71	16	57	37	14	19	28	1.91
41226366--41226432	20	3.3	20	89	0	98	35	13	20	29	1.91
41226481--41226624	24	6.0	24	88	8	213	30	20	20	27	1.98
41229957--41230086	40	3.2	40	81	2	163	24	28	23	23	2.00
41229973--41230122	80	1.9	80	83	2	194	22	28	24	25	1.99
41237174--41237303	40	3.2	40	81	2	163	24	28	23	23	2.00
41237190--41237339	80	1.9	80	83	2	194	22	28	24	25	1.99
41238883--41239026	39	3.7	39	92	0	243	26	20	29	22	1.99
41238884--41239066	78	2.3	79	90	1	278	24	22	29	23	1.99
41246852--41246995	39	3.7	39	92	0	243	26	20	29	22	1.99
41246853--41247035	78	2.3	79	90	1	278	24	22	29	23	1.99
41250047--41250258	46	4.6	46	76	14	184	28	18	29	22	1.98
41250089--41250311	46	4.8	48	76	15	186	30	18	28	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41250052--41250258	93	2.2	92	80	11	219	28	18	29	22	1.98
41250055--41250311	139	1.8	139	82	8	326	29	18	28	23	1.98
41258121--41258407	49	5.8	49	77	3	313	31	25	18	25	1.98
41258121--41258414	100	2.9	100	90	1	446	30	25	19	24	1.98
41258134--41258407	149	1.8	149	81	3	345	31	25	18	24	1.97
41262935--41263013	26	3.0	26	96	0	149	26	26	20	26	1.99
41262944--41263026	26	3.2	24	81	13	94	26	27	19	26	1.99
41262901--41263127	49	4.5	50	76	10	203	29	25	18	25	1.98
41264521--41264686	40	4.2	40	82	3	176	24	27	22	26	2.00
41268377--41268504	51	2.6	48	81	11	152	29	17	29	22	1.97
41271238--41271446	68	3.1	67	76	11	207	32	17	27	22	1.96
41272532--41272558	2	13.5	2	100	0	54	48	0	0	51	1.00
41277908--41277948	19	2.2	19	86	4	57	70	4	2	21	1.18
41277875--41277947	30	2.4	31	76	15	73	65	4	2	27	1.24
41282673--41282730	21	2.8	21	97	0	107	34	48	0	17	1.47
41282672--41282736	7	9.3	7	84	0	76	36	46	0	16	1.48
41282734--41282779	21	2.2	21	84	0	56	43	34	0	21	1.53
41283303--41283528	41	5.5	41	90	0	337	21	21	22	34	1.97
41283303--41283562	123	2.1	123	84	2	344	20	21	22	35	1.96
41283303--41283593	41	7.1	40	85	1	150	20	20	22	35	1.96
41299033--41299071	20	1.9	20	84	5	51	38	0	17	43	1.50
41299400--41299510	41	2.7	39	83	8	125	25	18	27	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41300965--41301020	22	2.5	23	77	11	62	19	21	21	37	1.94
41302565--41302638	38	1.9	38	88	0	112	32	17	22	27	1.97
41302437--41302817	133	2.8	132	86	5	485	30	15	22	30	1.95
41302600--41302817	95	2.3	95	96	0	400	30	15	22	31	1.95
41302790--41302866	38	2.0	38	89	0	118	29	15	24	29	1.96
41306439--41306480	20	2.1	20	86	0	57	47	0	7	45	1.30
41309008--41309067	30	2.0	30	90	0	93	28	25	8	38	1.84
41313017--41313047	6	5.0	6	96	4	53	64	0	19	16	1.29
41317670--41318404	44	16.5	44	71	7	390	31	19	15	34	1.93
41317928--41318419	133	3.7	133	84	2	571	31	19	15	33	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345