genome.fa.s12.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  168  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47107298--47107505	40	5.2	40	82	2	229	24	25	23	25	2.00
47113173--47113382	40	5.2	40	87	2	305	25	24	28	21	1.99
47126593--47126759	40	4.2	40	82	2	185	25	27	21	25	1.99
47126593--47126759	80	2.1	79	83	7	205	25	27	21	25	1.99
47127585--47127630	17	2.5	19	74	22	53	34	23	17	23	1.96
47128549--47128601	26	2.0	26	85	7	72	20	16	22	39	1.92
47129847--47129941	12	7.9	12	65	9	50	21	35	6	36	1.79
47129848--47129948	24	4.2	24	89	3	159	19	36	4	38	1.74
47130391--47130482	42	2.2	42	90	0	139	28	14	21	35	1.92
47136590--47136705	46	2.5	47	85	5	155	22	31	18	28	1.97
47145912--47146075	46	3.5	46	76	14	183	29	28	20	21	1.98
47145918--47146089	93	1.8	93	89	0	272	27	27	22	22	1.99
47148483--47148571	30	3.0	30	80	8	101	57	15	16	10	1.65
47148483--47148562	15	5.4	15	80	7	92	58	13	17	10	1.62
47148494--47148571	15	5.2	15	78	9	79	56	15	16	11	1.67
47150853--47151290	47	9.3	47	92	0	696	27	29	9	33	1.89
47150903--47150981	25	3.3	25	67	16	76	30	29	6	34	1.82
47154623--47154939	40	7.9	40	80	6	254	24	28	23	23	1.99
47154639--47154939	80	3.8	78	81	6	311	24	28	23	23	2.00
47154714--47154778	23	3.1	23	62	25	61	20	29	26	24	1.99
47154637--47154935	119	2.5	119	82	7	327	23	29	23	23	1.99
47157177--47157613	47	9.3	47	92	0	696	27	29	9	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47157227--47157305	25	3.3	25	67	16	76	30	29	6	34	1.82
47160950--47161267	40	7.9	40	80	5	263	24	28	23	23	1.99
47160966--47161267	80	3.8	78	82	5	320	24	28	23	23	2.00
47161041--47161105	23	3.1	23	62	25	61	20	29	26	24	1.99
47160964--47161264	119	2.5	119	82	6	331	23	28	23	23	1.99
47163508--47163944	47	9.3	47	91	0	678	27	29	9	33	1.89
47163558--47163636	25	3.3	25	67	16	76	30	29	6	34	1.82
47169747--47169822	37	2.1	37	85	9	102	43	1	2	52	1.23
47172845--47172879	2	17.5	2	100	0	70	51	0	0	48	1.00
47174738--47174853	43	2.7	42	76	7	126	23	17	25	34	1.96
47177778--47177907	43	3.1	42	73	13	122	33	23	13	28	1.93
47178361--47178419	30	1.9	31	83	10	77	30	27	0	42	1.56
47180850--47180928	39	2.0	39	100	0	158	17	7	22	51	1.70
47182122--47182571	49	9.1	49	92	0	711	31	9	29	29	1.88
47182640--47182725	37	2.3	36	92	7	138	20	18	33	26	1.96
47184619--47184699	40	2.0	40	87	0	117	24	23	28	23	2.00
47184859--47184913	25	2.2	25	87	6	76	30	12	29	27	1.93
47184898--47184995	28	3.5	28	72	5	90	20	19	29	30	1.97
47184896--47185022	56	2.3	56	95	0	227	18	18	33	29	1.95
47184923--47185022	28	3.6	28	72	10	105	18	18	36	28	1.94
47185480--47185584	40	2.6	41	85	5	126	26	24	24	23	2.00
47188650--47189050	49	8.1	49	92	1	640	31	8	29	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47189119--47189205	37	2.3	36	94	5	147	20	19	33	26	1.97
47206442--47206616	46	3.8	44	76	13	174	21	19	29	30	1.97
47206439--47206609	93	1.8	93	89	0	270	21	19	29	29	1.98
47214008--47214182	46	3.8	44	74	13	156	22	20	28	29	1.98
47214005--47214175	93	1.8	93	87	0	252	22	20	28	29	1.98
47230017--47230119	29	3.6	28	81	5	116	21	16	33	29	1.95
47237818--47237920	29	3.6	28	81	5	116	21	16	33	29	1.95
47239512--47239612	28	3.5	30	82	6	118	29	14	26	28	1.95
47239541--47239616	29	2.7	28	76	13	75	30	14	26	28	1.95
47247377--47247477	28	3.5	30	82	6	118	29	14	26	28	1.95
47247406--47247481	29	2.7	28	76	13	75	30	14	26	28	1.95
47254708--47254846	40	3.5	38	80	10	145	24	27	21	26	1.99
47254708--47254897	79	2.4	79	83	7	215	24	27	21	26	1.99
47254743--47254846	39	2.6	40	87	1	147	25	25	21	27	1.99
47261297--47261480	50	3.7	50	75	8	178	27	18	25	28	1.98
47266664--47266908	49	4.9	49	77	2	247	26	17	25	30	1.97
47266720--47266907	99	1.9	101	82	2	236	26	18	25	29	1.98
47270898--47271086	50	3.8	49	85	1	234	25	17	25	30	1.98
47276003--47276185	40	4.6	39	84	7	185	26	27	20	25	1.99
47276900--47276927	2	14.0	2	100	0	56	50	0	0	50	1.00
47281163--47281265	29	3.6	28	81	5	116	21	16	33	29	1.95
47285160--47285286	46	2.8	45	87	3	191	20	18	29	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47299081--47299133	27	2.0	27	88	7	81	32	18	16	32	1.94
47306042--47306163	44	2.8	43	78	9	133	29	26	19	24	1.99
47310492--47310592	28	3.5	28	86	6	114	29	13	26	29	1.94
47318446--47318546	28	3.5	28	86	6	114	29	13	26	29	1.94
47320384--47320524	40	3.5	40	94	1	230	23	29	23	24	1.99
47328415--47328554	40	3.5	40	92	3	221	23	28	23	24	2.00
47337441--47337497	9	5.9	9	73	15	51	35	8	21	35	1.84
47337439--47337509	20	3.5	20	94	0	124	35	11	21	32	1.89
47337450--47337504	11	5.4	11	70	16	55	36	12	20	30	1.90
47337556--47337745	23	8.1	23	92	2	299	27	23	21	27	1.99
47337554--47337747	47	4.1	47	91	2	318	28	23	21	26	1.99
47337958--47338052	31	3.1	31	96	0	172	40	15	21	23	1.91
47339593--47339635	2	21.5	2	100	0	86	51	0	0	48	1.00
47340611--47340740	44	3.0	43	79	3	136	32	26	18	23	1.97
47342605--47342662	27	2.1	27	80	0	62	29	22	8	39	1.84
47342627--47342745	27	4.4	27	78	4	123	26	22	10	39	1.87
47342627--47342745	55	2.2	54	86	4	177	26	22	10	39	1.87
47349145--47349209	28	2.4	28	92	2	96	21	9	26	43	1.82
47349155--47349213	28	2.1	28	100	0	118	16	11	25	45	1.82
47349851--47350001	54	2.8	54	92	0	248	31	7	21	40	1.80
47349848--47350008	27	6.0	27	83	0	214	32	8	19	39	1.81
47349994--47350244	27	9.3	27	86	6	303	40	8	21	29	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47349859--47350028	81	2.1	81	78	0	187	34	7	19	38	1.80
47349994--47350244	54	4.6	54	90	0	376	40	8	21	29	1.83
47349996--47350244	81	3.1	81	83	6	342	40	8	21	28	1.83
47353453--47353517	28	2.4	28	92	2	96	21	9	26	43	1.82
47353463--47353521	28	2.1	28	100	0	118	16	11	25	45	1.82
47354156--47354316	27	6.0	27	83	0	214	32	8	19	39	1.81
47354159--47354309	54	2.8	54	92	0	248	31	7	21	40	1.80
47354167--47354350	81	2.3	81	77	2	190	34	8	20	36	1.82
47354302--47354552	27	9.3	27	86	6	321	39	8	22	29	1.83
47354302--47354552	54	4.6	54	92	0	394	39	8	22	29	1.83
47361422--47361450	15	1.9	15	100	0	58	58	13	0	27	1.36
47362632--47362714	34	2.4	34	81	0	94	24	25	24	26	2.00
47365064--47365124	29	2.1	29	100	0	122	19	21	6	52	1.68
47365911--47365972	32	1.9	32	83	3	79	50	3	1	45	1.27
47368204--47368259	17	3.3	17	76	0	58	16	3	12	67	1.35
47371397--47371458	23	2.9	21	78	7	63	22	20	12	43	1.86
47374496--47374667	93	1.8	93	92	2	292	22	21	28	27	1.99
47374504--47374675	46	3.7	46	77	15	192	22	20	27	29	1.98
47377625--47377818	47	4.1	47	90	0	280	33	10	29	26	1.90
47377701--47377774	23	3.1	25	62	25	59	29	13	33	22	1.93
47377789--47377972	98	1.9	96	89	4	289	36	7	26	29	1.84
47377788--47377972	48	3.8	48	88	5	282	36	7	25	30	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47378121--47378227	37	2.9	37	94	0	178	23	18	30	27	1.98
47386882--47387100	40	5.6	40	90	3	329	26	30	21	22	1.99
47398849--47398918	27	2.5	28	86	2	97	32	25	14	27	1.94
47398926--47399032	42	2.5	42	95	0	187	23	33	14	28	1.94
47402252--47402501	40	6.2	40	90	1	385	25	24	28	22	1.99
47410115--47410364	40	6.2	40	90	1	385	25	24	28	22	1.99
47419045--47419293	40	6.2	40	89	2	376	25	23	28	22	1.99
47419045--47419293	79	3.1	80	91	2	376	25	23	28	22	1.99
47419045--47419293	119	2.1	119	89	2	374	25	23	28	22	1.99
47434720--47434769	21	2.5	20	76	3	55	18	18	16	48	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345