Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  135  of  345  ( 41379 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36604137--36604235
12
8.1
12
68
22
55
29
6
1
63
1.25
36604214--36604269
19
2.9
19
70
15
53
30
3
3
62
1.29
36611753--36611823
34
2.1
35
94
5
128
39
18
5
36
1.74
36616835--36617055
40
5.6
40
82
2
250
24
26
23
25
2.00
36619038--36619206
58
2.9
58
95
0
295
28
29
19
22
1.98
36619045--36619203
29
5.5
29
71
12
121
28
28
20
22
1.98
36619360--36619495
43
3.2
43
90
0
200
31
33
22
12
1.91
36620893--36620965
35
2.1
35
92
0
119
41
16
4
38
1.67
36622746--36622929
40
4.6
39
75
6
138
26
23
27
22
2.00
36622786--36622974
80
2.4
81
77
4
186
23
24
29
22
1.99
36627395--36627568
48
3.6
47
85
3
240
26
32
17
23
1.97
36627394--36627568
96
1.8
96
91
0
287
26
32
18
23
1.97
36633729--36633774
20
2.3
20
96
0
83
60
10
19
8
1.55
36634676--36634920
46
5.3
46
69
17
166
23
19
28
29
1.98
36634708--36634867
47
3.4
46
73
14
148
23
18
28
29
1.98
36634648--36634913
93
2.9
93
86
2
365
24
19
27
28
1.99
36638166--36638230
33
2.0
32
82
8
78
35
6
23
35
1.80
36640631--36640895
46
5.7
46
72
18
228
21
20
28
29
1.98
36640673--36640835
47
3.5
47
72
14
165
22
20
28
28
1.99
36640624--36640888
93
2.9
93
90
1
417
21
20
28
28
1.98
36641773--36641811
19
2.1
19
95
0
69
56
10
10
23
1.63
36643880--36643936
30
1.9
29
92
3
96
10
15
15
57
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36643877--36643937
15
4.1
15
75
10
63
9
14
14
60
1.58
36647035--36647303
46
5.8
46
73
14
221
22
17
28
31
1.96
36647094--36647249
47
3.3
47
75
12
185
22
16
30
31
1.95
36647031--36647296
93
2.9
93
91
0
442
22
17
28
31
1.97
36647388--36647546
46
3.4
47
75
11
175
21
18
29
30
1.97
36649087--36649264
39
4.6
39
77
8
157
24
26
24
24
2.00
36653241--36653448
40
5.2
39
84
1
218
25
25
22
25
2.00
36653241--36653446
80
2.6
81
84
3
247
25
26
22
25
2.00
36661235--36661357
40
3.1
40
87
0
183
24
28
23
23
2.00
36661381--36661456
40
1.9
40
86
0
107
27
23
19
28
1.98
36668321--36668500
40
4.6
40
74
5
125
22
26
24
26
2.00
36668356--36668500
40
3.6
40
79
6
159
22
25
24
27
2.00
36671984--36672116
55
2.5
53
74
8
126
36
18
23
21
1.95
36678555--36678738
40
4.6
40
82
4
174
28
22
26
23
1.99
36686661--36686844
40
4.6
40
82
4
174
28
22
26
23
1.99
36690850--36690924
11
6.8
11
82
0
78
4
10
32
53
1.54
36690850--36690907
22
2.6
22
88
0
89
1
10
37
50
1.47
36691645--36691815
53
3.2
53
75
2
135
36
17
23
22
1.95
36694687--36694806
41
2.8
42
76
15
131
32
26
16
24
1.96
36697916--36698074
43
3.7
44
77
4
171
27
15
25
32
1.95
36698943--36698990
24
2.0
24
100
0
96
33
25
4
37
1.75
36699469--36699555
44
2.0
44
93
0
147
33
19
16
31
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36708298--36708330
17
2.0
17
88
5
50
33
6
9
51
1.58
36710715--36710906
47
4.0
46
74
13
131
25
17
28
29
1.97
36714468--36714536
15
4.6
15
83
0
84
11
17
13
57
1.64
36714459--36714555
30
3.2
30
81
10
99
10
17
14
57
1.64
36717311--36717461
47
3.2
47
84
4
171
23
15
29
31
1.95
36719341--36719389
12
3.8
12
80
15
62
16
22
40
20
1.91
36722167--36722191
2
12.5
2
100
0
50
52
0
0
48
1.00
36723273--36723454
66
2.8
64
78
10
194
23
30
16
30
1.96
36744411--36744513
29
3.6
29
86
0
134
26
15
32
26
1.96
36755154--36755243
39
2.3
40
81
9
114
36
17
22
23
1.95
36757710--36757777
34
2.0
34
91
0
109
42
1
33
22
1.62
36761896--36762076
50
3.7
50
81
6
203
27
17
30
24
1.97
36762077--36762357
139
2.0
139
95
0
508
39
11
18
29
1.87
36767255--36767400
40
3.7
40
82
7
172
24
21
26
27
1.99
36767255--36767433
80
2.2
80
80
6
186
26
20
26
26
1.99
36775393--36775538
40
3.7
40
82
7
172
24
21
26
27
1.99
36775393--36775571
80
2.2
80
80
6
186
26
20
26
26
1.99
36777242--36777303
28
2.2
28
85
0
79
33
14
24
27
1.94
36790754--36790905
40
3.8
40
83
5
164
23
28
22
26
1.99
36796506--36796657
40
3.8
40
83
5
164
23
28
22
26
1.99
36800485--36800646
33
4.9
33
83
4
175
35
19
9
35
1.85
36800654--36800950
31
9.7
31
85
4
349
26
27
17
28
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36802323--36802368
22
2.0
23
84
12
60
26
21
2
50
1.60
36803527--36803568
15
2.8
15
88
0
66
52
14
16
16
1.75
36807021--36807182
33
4.9
33
84
4
175
33
20
10
34
1.87
36807093--36807182
32
2.8
33
86
1
119
37
21
10
31
1.86
36807177--36807363
31
6.2
29
81
8
153
26
26
14
32
1.95
36807248--36807487
31
7.7
31
85
0
318
27
25
17
30
1.97
36807219--36807487
62
4.4
62
84
3
341
27
25
17
30
1.97
36807219--36807487
93
2.9
93
82
2
328
27
25
17
30
1.97
36813411--36813441
14
2.2
14
94
0
53
77
6
3
12
1.08
36818091--36818134
22
2.0
22
90
0
70
56
4
0
38
1.20
36821640--36821705
25
2.6
25
95
0
114
30
22
15
31
1.95
36822838--36822960
65
1.9
65
91
0
201
29
30
17
23
1.97
36847403--36847461
30
2.0
30
90
6
93
54
11
0
33
1.37
36850858--36850882
2
12.5
2
100
0
50
48
0
0
52
1.00
36853858--36853912
23
2.4
23
93
0
92
45
21
5
27
1.74
36854046--36854139
30
3.2
30
69
19
97
43
25
8
22
1.81
36854448--36854478
2
15.0
2
93
6
53
48
3
0
48
1.17
36854695--36854789
42
2.3
42
78
10
97
30
23
18
27
1.98
36855873--36855907
18
1.9
18
88
11
54
37
11
8
42
1.72
36855921--36855945
13
1.9
13
100
0
50
40
24
4
32
1.73
36861921--36861954
12
2.8
12
90
0
50
17
23
32
26
1.97
36866188--36866246
30
2.0
30
86
0
82
38
3
25
32
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36870714--36870814
28
3.5
28
86
6
114
29
26
13
29
1.94
36882630--36882780
40
3.8
40
77
13
134
27
23
26
22
2.00
36882666--36882796
40
3.3
40
79
2
156
25
23
27
23
2.00
36890091--36890308
40
5.5
40
90
2
316
25
27
22
24
2.00
36894308--36894341
16
2.1
16
88
0
50
67
2
8
20
1.31
36896316--36896566
68
3.8
65
77
10
219
29
17
29
23
1.97
36901616--36901737
37
3.3
37
97
0
226
21
33
19
25
1.97
36901839--36902212
49
7.4
49
89
7
559
29
32
8
28
1.87
36901999--36902118
61
2.0
61
100
0
240
33
31
6
28
1.83
36901899--36902217
159
2.0
159
94
0
557
30
32
7
29
1.86
36901950--36902167
110
2.0
110
97
0
409
31
32
7
28
1.84
36905466--36905600
29
4.7
29
98
0
252
24
33
16
25
1.96
36905798--36905882
40
2.1
40
84
4
109
23
25
21
29
1.99
36907694--36907814
37
3.3
37
95
2
217
21
33
19
25
1.97
36907916--36908280
49
7.4
49
95
1
613
29
33
8
27
1.87
36907916--36908280
199
1.8
196
92
1
613
29
33
8
27
1.87
36917048--36917178
40
3.3
40
81
2
165
25
22
27
24
2.00
36923113--36923508
203
2.0
203
98
0
765
34
6
15
42
1.74
36930189--36930851
48
13.8
47
87
6
897
35
6
27
30
1.82
36930181--36930851
96
7.0
96
91
0
1045
35
6
27
30
1.82
36930181--36930851
144
4.7
144
92
0
1063
35
6
27
30
1.82
36930904--36931082
37
4.8
37
90
0
268
25
18
31
24
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36940852--36941037
92
2.0
92
97
0
354
30
22
16
31
1.96
36943329--36943408
40
2.0
40
100
0
160
45
17
5
32
1.70
36943716--36943768
11
5.1
10
76
17
54
13
9
1
75
1.12
36943772--36943810
20
2.1
18
85
9
51
35
2
0
61
1.10
36945139--36945191
26
2.0
27
88
3
81
30
20
16
32
1.95
36945401--36945443
23
1.9
23
90
4
70
20
4
51
23
1.66
36954852--36954905
24
2.2
24
84
12
67
29
37
16
16
1.91
36962643--36962696
24
2.2
24
84
12
67
29
37
16
16
1.91
36964519--36964564
23
2.0
23
84
12
60
45
10
6
36
1.65
36964526--36964570
23
2.0
23
82
8
56
40
13
8
37
1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345